Index: head/biology/fastqc/Makefile =================================================================== --- head/biology/fastqc/Makefile (revision 512460) +++ head/biology/fastqc/Makefile (revision 512461) @@ -1,43 +1,41 @@ # $FreeBSD$ PORTNAME= fastqc -DISTVERSIONPREFIX= v -DISTVERSION= 0.11.5 +DISTVERSION= 0.11.8 CATEGORIES= biology java perl5 MASTER_SITES= https://www.bioinformatics.babraham.ac.uk/projects/fastqc/ -DISTNAME= ${PORTNAME}_${DISTVERSIONPREFIX}${DISTVERSION} +DISTNAME= ${PORTNAME}_v${DISTVERSIONPREFIX}${DISTVERSION} MAINTAINER= jwb@FreeBSD.org COMMENT= Quality control tool for high throughput sequence data LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/LICENSE.txt -NO_ARCH= yes -NO_BUILD= yes - USES= zip perl5 shebangfix -SHEBANG_FILES= fastqc USE_JAVA= yes USE_PERL5= run +SHEBANG_FILES= fastqc + +NO_ARCH= yes +NO_BUILD= yes WRKSRC= ${WRKDIR}/FastQC post-patch: ${REINPLACE_CMD} \ -e 's|$$RealBin$$delimiter|${DATADIR}$$delimiter${JAVAJARDIR}/fastqc$$delimiter|g' \ -e 's|$$RealBin/|${JAVAJARDIR}/fastqc/|g' \ ${WRKSRC}/fastqc # Help files are not optional docs, but required for Help menu functionality do-install: - ${MKDIR} ${STAGEDIR}${JAVAJARDIR}/fastqc + @${MKDIR} ${STAGEDIR}${JAVAJARDIR}/fastqc ${INSTALL_DATA} ${WRKSRC}/*.jar ${STAGEDIR}${JAVAJARDIR}/fastqc - ${INSTALL_SCRIPT} ${WRKSRC}/fastqc \ - ${STAGEDIR}${PREFIX}/bin + ${INSTALL_SCRIPT} ${WRKSRC}/fastqc ${STAGEDIR}${PREFIX}/bin cd ${WRKSRC} && ${COPYTREE_SHARE} "Configuration Help Templates" \ ${STAGEDIR}${DATADIR} cd ${WRKSRC} && ${COPYTREE_SHARE} "net org uk" \ ${STAGEDIR}${JAVAJARDIR}/fastqc .include Index: head/biology/fastqc/distinfo =================================================================== --- head/biology/fastqc/distinfo (revision 512460) +++ head/biology/fastqc/distinfo (revision 512461) @@ -1,3 +1,3 @@ -TIMESTAMP = 1509737655 -SHA256 (fastqc_v0.11.5.zip) = dd7a5ad80ceed2588cf6d6ffe35e0f161c0d9977ed08355f5e4d9473282cbd66 -SIZE (fastqc_v0.11.5.zip) = 10026429 +TIMESTAMP = 1538750959 +SHA256 (fastqc_v0.11.8.zip) = ca87fe77807e4ac796b6cad949858921fd20652c4038f586f05ece94b5022129 +SIZE (fastqc_v0.11.8.zip) = 10255059 Property changes on: head/biology/fastqc/distinfo ___________________________________________________________________ Modified: fbsd:nokeywords ## -1 +1 ## -on \ No newline at end of property +yes \ No newline at end of property Index: head/biology/fastqc/pkg-descr =================================================================== --- head/biology/fastqc/pkg-descr (revision 512460) +++ head/biology/fastqc/pkg-descr (revision 512461) @@ -1,7 +1,7 @@ FastQC aims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelines. It provides a modular set of analyses which you can use to give a quick impression of whether your data has any problems of which you should be aware before doing any -further analysis. +further analysis. WWW: http://www.bioinformatics.babraham.ac.uk/projects/fastqc/ Property changes on: head/biology/fastqc/pkg-descr ___________________________________________________________________ Modified: fbsd:nokeywords ## -1 +1 ## -on \ No newline at end of property +yes \ No newline at end of property