Index: head/biology/checkm/Makefile
===================================================================
--- head/biology/checkm/Makefile	(revision 508420)
+++ head/biology/checkm/Makefile	(revision 508421)
@@ -1,28 +1,27 @@
 # $FreeBSD$
 
 PORTNAME=	CheckM
 DISTVERSIONPREFIX=	v
-DISTVERSION=	1.0.13
-PORTREVISION=	2
+DISTVERSION=	1.0.16
 CATEGORIES=	biology python
 
 MAINTAINER=	yuri@FreeBSD.org
 COMMENT=	Quality assessment tool for the microbial genomes
 
 LICENSE=	GPLv3
 LICENSE_FILE=	${WRKSRC}/LICENSE
 
 RUN_DEPENDS=	${PYNUMPY} \
 		${PYTHON_PKGNAMEPREFIX}DendroPy>=4.0.0:science/py-DendroPy@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}matplotlib>=1.3.1:math/py-matplotlib@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}pysam>=0.8.3:biology/py-pysam@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}scipy>=0.9.0:science/py-scipy@${PY_FLAVOR}
 
 USES=		python
 USE_GITHUB=	yes
 GH_ACCOUNT=	Ecogenomics
 USE_PYTHON=	distutils noflavors autoplist
 
 NO_ARCH=	yes
 
 .include <bsd.port.mk>
Index: head/biology/checkm/distinfo
===================================================================
--- head/biology/checkm/distinfo	(revision 508420)
+++ head/biology/checkm/distinfo	(revision 508421)
@@ -1,3 +1,3 @@
-TIMESTAMP = 1549752955
-SHA256 (Ecogenomics-CheckM-v1.0.13_GH0.tar.gz) = 7fe2e86892bcead16f1dda4201ccd8f6371f491be8ecf9ba31bde24157d5fa36
-SIZE (Ecogenomics-CheckM-v1.0.13_GH0.tar.gz) = 211472
+TIMESTAMP = 1565335007
+SHA256 (Ecogenomics-CheckM-v1.0.16_GH0.tar.gz) = f884e105b145030bbaf15406c528f1bd1464fb4c303a82e327c4b42b21790ce8
+SIZE (Ecogenomics-CheckM-v1.0.16_GH0.tar.gz) = 211994