Index: head/biology/viennarna/Makefile
===================================================================
--- head/biology/viennarna/Makefile	(revision 505048)
+++ head/biology/viennarna/Makefile	(revision 505049)
@@ -1,41 +1,41 @@
 # $FreeBSD$
 
 PORTNAME=	viennarna
 DISTVERSION=	2.4.13
 CATEGORIES=	biology
 MASTER_SITES=	https://www.tbi.univie.ac.at/RNA/download/sourcecode/2_4_x/
 DISTNAME=	ViennaRNA-${DISTVERSION}
 
 MAINTAINER=	yuri@FreeBSD.org
 COMMENT=	Alignment tools for the structural analysis of RNA
 
 LICENSE=	ViennaRNALicense
 LICENSE_NAME=	Vienna RNA License
 LICENSE_FILE=	${WRKSRC}/COPYING
 LICENSE_PERMS=	auto-accept dist-mirror pkg-mirror
 
 BUILD_DEPENDS=	bash:shells/bash \
 		libgd>0:graphics/gd # for the static lib
 LIB_DEPENDS=	libgmp.so:math/gmp \
 		libgsl.so:math/gsl \
 		libmpfr.so:math/mpfr
 
-USES=		compiler:c++11-lang gmake libtool localbase perl5
+USES=		autoreconf compiler:c++11-lang gmake libtool localbase perl5 pkgconfig # w/out autoreconf -lstdc++ is present in configure and Makefiles and this causes link failure
 USE_XORG=	x11 xext # only for build
 
 GNU_CONFIGURE=	yes
 CONFIGURE_SHELL=	${PREFIX}/bin/bash
 CONFIGURE_ARGS=	--enable-shared --disable-static --with-gsl --with-cluster --with-kinwalker --enable-mpfr --without-python --without-python3 --without-perl
 
 INFO=		RNAlib
 
 DATASDIR=	${PREFIX}/share/ViennaRNA
 DOCSDIR=	${PREFIX}/share/doc/ViennaRNA
 EXAMPLESDIR=	${PREFIX}/share/examples/ViennaRNA
 
 OPTIONS_DEFINE=	DOCS EXAMPLES
 
 PORTDOCS=	*
 PORTEXAMPLES=	*
 
 .include <bsd.port.mk>
Index: head/biology/viennarna/files/patch-configure
===================================================================
--- head/biology/viennarna/files/patch-configure	(revision 505048)
+++ head/biology/viennarna/files/patch-configure	(nonexistent)
@@ -1,11 +0,0 @@
---- configure.orig	2019-05-31 13:31:21 UTC
-+++ configure
-@@ -22325,7 +22325,7 @@ fi
- if test "x$enable_static_executables" = "xyes"; then
- 
-     SAVED_LDFLAGS=$LDFLAGS
--    LDFLAGS="$LDFLAGS -static -lstdc++"
-+    LDFLAGS="$LDFLAGS -static -lc++"
- 
-     { $as_echo "$as_me:${as_lineno-$LINENO}: Checking possiblity to build statically linked executables using C++ compiler" >&5
- $as_echo "$as_me: Checking possiblity to build statically linked executables using C++ compiler" >&6;}

Property changes on: head/biology/viennarna/files/patch-configure
___________________________________________________________________
Deleted: fbsd:nokeywords
## -1 +0,0 ##
-yes
\ No newline at end of property
Deleted: svn:eol-style
## -1 +0,0 ##
-native
\ No newline at end of property
Deleted: svn:mime-type
## -1 +0,0 ##
-text/plain
\ No newline at end of property
Index: head/biology/viennarna/files/patch-examples_Makefile.in
===================================================================
--- head/biology/viennarna/files/patch-examples_Makefile.in	(revision 505048)
+++ head/biology/viennarna/files/patch-examples_Makefile.in	(nonexistent)
@@ -1,11 +0,0 @@
---- examples/Makefile.in.orig	2019-06-24 07:09:07 UTC
-+++ examples/Makefile.in
-@@ -441,7 +441,7 @@ target_alias = @target_alias@
- top_build_prefix = @top_build_prefix@
- top_builddir = @top_builddir@
- top_srcdir = @top_srcdir@
--pkgexampledir = $(pkgdatadir)/examples
-+pkgexampledir = $(prefix)/share/examples/ViennaRNA
- pkgexampledatadir = $(pkgexampledir)/data
- pkgperlexampledir = $(pkgexampledir)/perl5
- pkgpythonexampledir = $(pkgexampledir)/python

Property changes on: head/biology/viennarna/files/patch-examples_Makefile.in
___________________________________________________________________
Deleted: fbsd:nokeywords
## -1 +0,0 ##
-yes
\ No newline at end of property
Deleted: svn:eol-style
## -1 +0,0 ##
-native
\ No newline at end of property
Deleted: svn:mime-type
## -1 +0,0 ##
-text/plain
\ No newline at end of property
Index: head/biology/viennarna/files/patch-RNA-Tutorial_Makefile.in
===================================================================
--- head/biology/viennarna/files/patch-RNA-Tutorial_Makefile.in	(revision 505048)
+++ head/biology/viennarna/files/patch-RNA-Tutorial_Makefile.in	(nonexistent)
@@ -1,11 +0,0 @@
---- RNA-Tutorial/Makefile.in.orig	2019-06-24 07:18:45 UTC
-+++ RNA-Tutorial/Makefile.in
-@@ -459,7 +459,7 @@ clean_tutorial_html = rm -f *.html *.css *.4ct *.4tc *
- @WITH_TUTORIAL_BUILD_TRUE@@WITH_TUTORIAL_PDFLATEX_FALSE@@WITH_TUTORIAL_PDF_TRUE@@WITH_TUTORIAL_TRUE@CONVERT_TUT_TO_PDF = $(TUTORIAL_CMD_DVIPDF) tutorial.dvi;
- html_DATA = $(TUTORIAL_FILES_HTML)
- pdf_DATA = $(TUTORIAL_FILES_PDF)
--@WITH_TUTORIAL_PDF_TRUE@tut_datadir = $(pkgdatadir)/tutorial
-+@WITH_TUTORIAL_PDF_TRUE@tut_datadir = $(prefix)/share/doc/ViennaRNA/tutorial
- @WITH_TUTORIAL_PDF_TRUE@tut_programsdir = $(tut_datadir)/programs
- @WITH_TUTORIAL_PDF_TRUE@tut_alifoldzdir = $(tut_datadir)/alifoldz
- @WITH_TUTORIAL_PDF_TRUE@tut_qrnadir = $(tut_datadir)/qrna

Property changes on: head/biology/viennarna/files/patch-RNA-Tutorial_Makefile.in
___________________________________________________________________
Deleted: fbsd:nokeywords
## -1 +0,0 ##
-yes
\ No newline at end of property
Deleted: svn:eol-style
## -1 +0,0 ##
-native
\ No newline at end of property
Deleted: svn:mime-type
## -1 +0,0 ##
-text/plain
\ No newline at end of property
Index: head/biology/viennarna/files/patch-RNA-Tutorial_Makefile.am
===================================================================
--- head/biology/viennarna/files/patch-RNA-Tutorial_Makefile.am	(nonexistent)
+++ head/biology/viennarna/files/patch-RNA-Tutorial_Makefile.am	(revision 505049)
@@ -0,0 +1,11 @@
+--- RNA-Tutorial/Makefile.am.orig	2019-06-24 18:48:09 UTC
++++ RNA-Tutorial/Makefile.am
+@@ -95,7 +95,7 @@ vrna_htmltutorial_uninst:
+ 
+ if WITH_TUTORIAL_PDF
+ 
+-tut_datadir         = $(pkgdatadir)/tutorial
++tut_datadir         = $(prefix)/share/doc/ViennaRNA/tutorial
+ tut_programsdir     = $(tut_datadir)/programs
+ tut_alifoldzdir     = $(tut_datadir)/alifoldz
+ tut_qrnadir         = $(tut_datadir)/qrna

Property changes on: head/biology/viennarna/files/patch-RNA-Tutorial_Makefile.am
___________________________________________________________________
Added: fbsd:nokeywords
## -0,0 +1 ##
+yes
\ No newline at end of property
Added: svn:eol-style
## -0,0 +1 ##
+native
\ No newline at end of property
Added: svn:mime-type
## -0,0 +1 ##
+text/plain
\ No newline at end of property
Index: head/biology/viennarna/files/patch-examples_Makefile.am
===================================================================
--- head/biology/viennarna/files/patch-examples_Makefile.am	(nonexistent)
+++ head/biology/viennarna/files/patch-examples_Makefile.am	(revision 505049)
@@ -0,0 +1,8 @@
+--- examples/Makefile.am.orig	2019-06-24 18:49:57 UTC
++++ examples/Makefile.am
+@@ -1,4 +1,4 @@
+-pkgexampledir = $(pkgdatadir)/examples
++pkgexampledir = $(prefix)/share/examples/ViennaRNA
+ pkgexampledatadir = $(pkgexampledir)/data
+ pkgperlexampledir = $(pkgexampledir)/perl5
+ pkgpythonexampledir = $(pkgexampledir)/python

Property changes on: head/biology/viennarna/files/patch-examples_Makefile.am
___________________________________________________________________
Added: fbsd:nokeywords
## -0,0 +1 ##
+yes
\ No newline at end of property
Added: svn:eol-style
## -0,0 +1 ##
+native
\ No newline at end of property
Added: svn:mime-type
## -0,0 +1 ##
+text/plain
\ No newline at end of property