Index: head/math/blaze/Makefile =================================================================== --- head/math/blaze/Makefile (revision 502829) +++ head/math/blaze/Makefile (revision 502830) @@ -1,28 +1,31 @@ # $FreeBSD$ PORTNAME= blaze DISTVERSION= 3.5 PORTREVISION= 1 CATEGORIES= math MASTER_SITES= https://bitbucket.org/${BB_ACCOUNT}/${BB_PROJECT}/downloads/ MAINTAINER= yuri@FreeBSD.org COMMENT= C++ math library for dense and sparse arithmetic LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE +DEPRECATED= Depends on expiring devel/openmp +EXPIRATION_DATE= 2019-12-31 + BUILD_DEPENDS= boost-libs>0:devel/boost-libs \ openblas>0:math/openblas \ openmp>0:devel/openmp RUN_DEPENDS= boost-libs>0:devel/boost-libs \ openblas>0:math/openblas \ openmp>0:devel/openmp USES= cmake compiler:c++14-lang fortran localbase:ldflags NO_ARCH= yes BB_ACCOUNT= ${PORTNAME}-lib BB_PROJECT= ${PORTNAME} .include Index: head/math/blazeiterative/Makefile =================================================================== --- head/math/blazeiterative/Makefile (revision 502829) +++ head/math/blazeiterative/Makefile (revision 502830) @@ -1,26 +1,29 @@ # $FreeBSD$ PORTNAME= blazeiterative PORTVERSION= g20180409 PORTREVISION= 5 CATEGORIES= math MAINTAINER= yuri@FreeBSD.org COMMENT= Set of iterative linear system solvers for use with the Blaze library #LICENSE= https://github.com/tjolsen/BlazeIterative/issues/9 +DEPRECATED= Depends on expiring devel/openmp +EXPIRATION_DATE= 2019-12-31 + BUILD_DEPENDS= blaze>0:math/blaze \ boost-libs>0:devel/boost-libs \ openblas>0:math/openblas \ openmp>0:devel/openmp RUN_DEPENDS= blaze>0:math/blaze USES= cmake compiler:c++14-lang fortran localbase:ldflags USE_GITHUB= yes GH_ACCOUNT= tjolsen GH_PROJECT= BlazeIterative GH_TAGNAME= e9f24b3 NO_ARCH= yes .include Index: head/science/openmx/Makefile =================================================================== --- head/science/openmx/Makefile (revision 502829) +++ head/science/openmx/Makefile (revision 502830) @@ -1,72 +1,74 @@ # $FreeBSD$ PORTNAME= openmx DISTVERSION= 3.8.5 # the 18June12 patch upgrades 3.8 -> 3.8.5 PORTREVISION= 4 CATEGORIES= science MASTER_SITES= http://www.openmx-square.org/ \ http://www.openmx-square.org/bugfixed/18June12/:patch DISTFILES= ${PORTNAME}${DISTVERSION:R}${EXTRACT_SUFX} \ patch${DISTVERSION}${EXTRACT_SUFX}:patch # this patch isn't a patch, but a set of file updates DIST_SUBDIR= ${PORTNAME} EXTRACT_ONLY= ${PORTNAME}${DISTVERSION:R}${EXTRACT_SUFX} MAINTAINER= yuri@FreeBSD.org COMMENT= Nanoscale material simulations using density functional theories (DFT) LICENSE= GPLv2 BROKEN_i386= undefined reference to `__atomic_load', see bug#229605 and https://reviews.llvm.org/D42154 +DEPRECATED= Depends on expiring devel/openmp +EXPIRATION_DATE= 2019-12-31 LIB_DEPENDS= libblas.so:math/blas \ libfftw3.so:math/fftw3 \ liblapack.so:math/lapack \ libmpich.so:net/mpich \ libiomp5.so:devel/openmp USES= dos2unix fortran gmake localbase:ldflags DOS2UNIX_FILES= openmx_common.h USE_CXXSTD= c++11 MAKEFILE= makefile WRKSRC= ${WRKDIR}/${PORTNAME}${DISTVERSION:R} CFLAGS+= -Dkcomp LDFLAGS+= ${LOCALBASE}/lib/gcc${GCC_DEFAULT}/libgcc_s.so ${LOCALBASE}/lib/libmpifort.so WRKSRC_SUBDIR= source MAKE_ENV= MPICH_CC=${CC} MAKE_ARGS+= CFLAGS="${CFLAGS}" FFLAGS="${FFLAGS}" LDFLAGS="${LDFLAGS}" GCC_LIB=${LOCALBASE}/lib/gcc${GCC_DEFAULT}/libgfortran.so BINARY_ALIAS= gcc=${CXX} gcc7=${CXX} UTIL_PROGS= DosMain jx analysis_example esp polB bandgnu13 bin2txt cube2xsf intensity_map md2axsf PLIST_FILES= bin/${PORTNAME} ${UTIL_PROGS:C/^/bin\//} OPTIONS_DEFINE_amd64= SIMD OPTIONS_DEFINE_i386= SIMD OPTIONS_DEFAULT_amd64= SIMD OPTIONS_DEFAULT_i386= SIMD SIMD_CFLAGS= -msse -msse2 -mfpmath=sse SIMD_CFLAGS_OFF= -Dnosse CFLAGS+= ${ARCH:S/amd64//:S/i386//:S/${ARCH}/-Dnosse/} pre-patch: # overlay files before patching @cd ${WRKSRC} && ${TAR} xzf ${DISTDIR}/${DIST_SUBDIR}/patch${DISTVERSION}${EXTRACT_SUFX} post-patch: @cd ${WRKSRC} && ${REINPLACE_CMD} 's|DFT_DATA_PATH|"${DATADIR}/DFT_DATA13"|' Input_std.c check_lead.c SetPara_DFT.c OutData.c OutData_Binary.c post-install: .for u in ${UTIL_PROGS} ${INSTALL_PROGRAM} ${WRKSRC}/${u} ${STAGEDIR}${PREFIX}/bin .endfor cd ${WRKSRC}/.. && ${COPYTREE_SHARE} DFT_DATA13 ${STAGEDIR}${DATADIR} # autoplist for potentials: about 500 files in DATADIR @cd ${STAGEDIR}${PREFIX} && \ ${FIND} ${DATADIR:S/^${PREFIX}\///} -type f >> ${TMPPLIST} .include Index: head/science/py-PyFR/Makefile =================================================================== --- head/science/py-PyFR/Makefile (revision 502829) +++ head/science/py-PyFR/Makefile (revision 502830) @@ -1,46 +1,49 @@ # $FreeBSD$ PORTNAME= PyFR DISTVERSION= 1.8.0 PORTREVISION= 3 CATEGORIES= science python MASTER_SITES= http://www.pyfr.org/download/ PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Framework for solving advection-diffusion type problems LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE +DEPRECATED= Depends on expiring devel/openmp +EXPIRATION_DATE= 2019-12-31 + RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}appdirs>=1.4.0:devel/py-appdirs@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}gimmik>=2.0:math/py-gimmik@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}h5py>=2.6:science/py-h5py@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}mako>=1.0.0:textproc/py-mako@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}mpi4py>=2.0:net/py-mpi4py@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytools>=2016.2.1:devel/py-pytools@${PY_FLAVOR} \ ${NUMPY} USES= python:3.3+ shebangfix zip SHEBANG_FILES= setup.py pyfr/__main__.py USE_PYTHON= distutils concurrent autoplist NO_ARCH= yes OPTIONS_MULTI= PARALLEL OPTIONS_MULTI_PARALLEL= OPENCL OPENMP # CUDA isn't supported on FreeBSD OPTIONS_DEFAULT= ${OPTIONS_MULTI_PARALLEL} PARALLEL_DESC= Parallelization backends to install OPENCL_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pyopencl>0:devel/py-pyopencl@${PY_FLAVOR} \ clblas>0:math/clblas OPENMP_RUN_DEPENDS= openmp>0:devel/openmp \ libxsmm>0:math/libxsmm pre-build: # patch in pre-build to make the patch less error-prone (it has %%LOCALBASE%%) @${REINPLACE_CMD} 's|%%LOCALBASE%%|${LOCALBASE}|' ${WRKSRC}/pyfr/backends/openmp/compiler.py post-install: # workaround: https://groups.google.com/forum/#!topic/pyfrmailinglist/RNi_LcizGBo @${RM} ${STAGEDIR}${PREFIX}/__main__.py @${REINPLACE_CMD} 's|^${PREFIX}/__main__\.py||' ${_PYTHONPKGLIST} .include Index: head/science/py-phono3py/Makefile =================================================================== --- head/science/py-phono3py/Makefile (revision 502829) +++ head/science/py-phono3py/Makefile (revision 502830) @@ -1,33 +1,36 @@ # $FreeBSD$ PORTNAME= phono3py DISTVERSION= 1.13.3.27 PORTREVISION= 2 CATEGORIES= science python MASTER_SITES= CHEESESHOP PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Software to calculate phonon-phonon interaction and related properties LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE +DEPRECATED= Depends on expiring devel/openmp +EXPIRATION_DATE= 2019-12-31 + BUILD_DEPENDS= ${PYNUMPY} \ ${PYTHON_PKGNAMEPREFIX}h5py>0:science/py-h5py@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}phonopy>=1.13.2:science/py-phonopy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}yaml>0:devel/py-yaml@${PY_FLAVOR} \ ${LOCALBASE}/include/lapacke.h:math/lapacke \ openmp>0:devel/openmp RUN_DEPENDS= ${PYNUMPY} \ ${PYTHON_PKGNAMEPREFIX}h5py>0:science/py-h5py@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}phonopy>=1.13.2:science/py-phonopy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}yaml>0:devel/py-yaml@${PY_FLAVOR} \ openmp>0:devel/openmp USES= blaslapack:openblas localbase python USE_PYTHON= distutils cython autoplist .include