Index: head/science/code_saturne/Makefile =================================================================== --- head/science/code_saturne/Makefile (revision 502040) +++ head/science/code_saturne/Makefile (revision 502041) @@ -1,104 +1,103 @@ # Created by: thierry@pompo.net # $FreeBSD$ PORTNAME= code_saturne -PORTVERSION= 5.3.2 +PORTVERSION= 5.3.3 DISTVERSIONPREFIX= v -PORTREVISION= 3 CATEGORIES= science parallel MAINTAINER= thierry@FreeBSD.org COMMENT= EDF's general purpose Computational Fluid Dynamics (CFD) software LICENSE= GPLv2 LIB_DEPENDS= libsysinfo.so:devel/libsysinfo \ libcgns.so:science/cgnslib \ libhdf5.so:science/hdf5 \ libomp.so:devel/openmp \ libmedC.so:french/med RUN_DEPENDS= xmgrace:math/grace \ bash:shells/bash \ xterm:x11/xterm USE_GITHUB= yes GH_ACCOUNT= code-saturne USES= autoreconf bison fortran gettext gnome gmake iconv libtool \ - pyqt:5 python:2.7 shebangfix + pyqt:5 python:3.6 shebangfix USE_GNOME= libxml2 USE_PYQT= core gui sip widgets xml_build SHEBANG_FILES= install_saturne.py tests/unittests.py bin/*.py build-aux/*.py CPPFLAGS+= -I${LOCALBASE}/include -I${LOCALBASE}/include/libxml2 GNU_CONFIGURE= yes USE_LDCONFIG= yes BINARY_ALIAS= python=${PYTHON_CMD} \ pyrcc5=pyrcc5-${PYTHON_VER} \ pyuic5=pyuic5-${PYTHON_VER} OPTIONS_DEFINE= DOCS EXAMPLES ATLAS BATCH MPI OPTIONS_DEFAULT= BATCH MPI METIS OPTIONS_RADIO= METIS OPTIONS_RADIO_METIS= METIS PARMETIS ATLAS_USES= blaslapack:atlas ATLAS_CONFIGURE_ON= --with-blas=yes --with-blas-type=ATLAS BATCH_DESC= Use Torque to submit batches BATCH_RUN_DEPENDS= pbs-config:sysutils/torque MPI_LIB_DEPENDS= libmpi.so:net/mpich MPI_CONFIGURE_WITH= mpi METIS_LIB_DEPENDS= libmetis.so:math/metis METIS_CONFIGURE_ON= --with-metis-include="${LOCALBASE}/include" PARMETIS_LIB_DEPENDS= libparmetis.so:math/parmetis PARMETIS_CONFIGURE_ON= --with-metis-include="${LOCALBASE}/include/parmetis" \ --with-metis-lib="${LOCALBASE}/lib/parmetis" PARMETIS_CONFIGURE_ENV= LIBS=-lexecinfo TEST_TARGET= check .if defined(PACKAGE_BUILDING) TERM= vt100 # Force for pointyhat to override su .else TERM?= vt100 # Default value needed for tput in jail or tinderbox .endif .include .if ${ARCH} == "i386" # /wrkdirs/usr/ports/science/code_saturne/work/code_saturne-5.3.0/src/apps/.libs # /libsaturne.so: # undefined reference to `__atomic_compare_exchange' CONFIGURE_ARGS+= --disable-openmp .endif .if ${PORT_OPTIONS:MDOCS} USE_TEX= tex:build BUILD_DEPENDS+= fig2dev:print/transfig \ doxygen:devel/doxygen \ dot:graphics/graphviz \ sphinx-build-${PYTHON_VER}:textproc/py-sphinx@${PY_FLAVOR} BINARY_ALIAS+= sphinx-build=sphinx-build-${PYTHON_VER} ALL_TARGET= all pdf DOCS= AUTHORS ChangeLog README .endif pre-configure: (cd ${WRKSRC} && ${LS} preprocessor/*/*.c src/*/*.c* | \ ${GREP} -v user_examples > po/POTFILES.in) ${FLEX} -o ${WRKSRC}/src/mei/mei_scanner.c ${WRKSRC}/src/mei/mei_scanner.l ${LOCALBASE}/bin/bison --defines=${WRKSRC}/src/mei/mei_parser.h \ -o ${WRKSRC}/src/mei/mei_parser.c ${WRKSRC}/src/mei/mei_parser.y ${REINPLACE_CMD} -e 's|/usr/bin/env python|${PYTHON_CMD}|' \ ${WRKSRC}/Makefile.am post-install: .if ${PORT_OPTIONS:MDOCS} ${MKDIR} ${STAGEDIR}${DOCSDIR} ${INSTALL_DATA} ${DOCS:C|^|${WRKSRC}/|} ${STAGEDIR}${DOCSDIR} .endif .if ${PORT_OPTIONS:MEXAMPLES} ${MKDIR} ${STAGEDIR}${EXAMPLESDIR} cd ${WRKSRC}/examples && ${COPYTREE_SHARE} \* ${STAGEDIR}${EXAMPLESDIR} .endif .include Index: head/science/code_saturne/distinfo =================================================================== --- head/science/code_saturne/distinfo (revision 502040) +++ head/science/code_saturne/distinfo (revision 502041) @@ -1,3 +1,3 @@ -TIMESTAMP = 1551540679 -SHA256 (code-saturne-code_saturne-v5.3.2_GH0.tar.gz) = 67b1fb37a01cf3648b980975337bd91ebc8058455df8a8b0f2215f0e698cea4f -SIZE (code-saturne-code_saturne-v5.3.2_GH0.tar.gz) = 18875472 +TIMESTAMP = 1557393862 +SHA256 (code-saturne-code_saturne-v5.3.3_GH0.tar.gz) = cbac0ae64551178ce0b4ac6bcc5cc6c6be007d054540263bc4df4794c56ca878 +SIZE (code-saturne-code_saturne-v5.3.3_GH0.tar.gz) = 18878277 Index: head/science/code_saturne/pkg-plist =================================================================== --- head/science/code_saturne/pkg-plist (revision 502040) +++ head/science/code_saturne/pkg-plist (revision 502041) @@ -1,1405 +1,1405 @@ bin/code_saturne bin/ple-config etc/bash_completion.d/code_saturne %%ETCDIR%%.cfg.template include/code_saturne/alaste.mod include/code_saturne/albase.mod include/code_saturne/alstru.mod include/code_saturne/atchem.mod include/code_saturne/atimbr.mod include/code_saturne/atincl.mod include/code_saturne/atsoil.mod include/code_saturne/bft_backtrace.h include/code_saturne/bft_error.h -include/code_saturne/bft_mem_usage.h include/code_saturne/bft_mem.h +include/code_saturne/bft_mem_usage.h include/code_saturne/bft_printf.h include/code_saturne/cavitation.mod include/code_saturne/cdomod.mod include/code_saturne/cfpoin.mod include/code_saturne/coincl.mod include/code_saturne/cpincl.mod include/code_saturne/cplsat.mod -include/code_saturne/cs_1d_wall_thermal_check.h include/code_saturne/cs_1d_wall_thermal.h +include/code_saturne/cs_1d_wall_thermal_check.h include/code_saturne/cs_advection_field.h include/code_saturne/cs_ale.h include/code_saturne/cs_all_to_all.h include/code_saturne/cs_array_reduce.h include/code_saturne/cs_assert.h include/code_saturne/cs_ast_coupling.h include/code_saturne/cs_at_data_assim.h include/code_saturne/cs_at_opt_interp.h include/code_saturne/cs_at_plugin.h include/code_saturne/cs_bad_cells_regularisation.h -include/code_saturne/cs_balance_by_zone.h include/code_saturne/cs_balance.h -include/code_saturne/cs_base_fortran.h +include/code_saturne/cs_balance_by_zone.h include/code_saturne/cs_base.h +include/code_saturne/cs_base_fortran.h include/code_saturne/cs_basis_func.h include/code_saturne/cs_benchmark.h include/code_saturne/cs_blas.h include/code_saturne/cs_block_dist.h include/code_saturne/cs_block_to_part.h include/code_saturne/cs_boundary_conditions.h include/code_saturne/cs_boundary_zone.h include/code_saturne/cs_c_bindings.mod include/code_saturne/cs_calcium.h include/code_saturne/cs_cdo_advection.h include/code_saturne/cs_cdo_bc.h include/code_saturne/cs_cdo_connect.h include/code_saturne/cs_cdo_diffusion.h include/code_saturne/cs_cdo_local.h include/code_saturne/cs_cdo_main.h include/code_saturne/cs_cdo_quantities.h include/code_saturne/cs_cdo_time.h include/code_saturne/cs_cdofb_ac.h include/code_saturne/cs_cdofb_navsto.h include/code_saturne/cs_cdofb_priv.h include/code_saturne/cs_cdofb_scaleq.h include/code_saturne/cs_cdofb_uzawa.h include/code_saturne/cs_cdofb_vecteq.h include/code_saturne/cs_cdovb_priv.h include/code_saturne/cs_cdovb_scaleq.h include/code_saturne/cs_cdovb_vecteq.h include/code_saturne/cs_cdovcb_scaleq.h include/code_saturne/cs_cf_bindings.mod include/code_saturne/cs_cf_thermo.h include/code_saturne/cs_coal_incl.mod include/code_saturne/cs_combustion_model.h include/code_saturne/cs_config.h include/code_saturne/cs_control.h include/code_saturne/cs_convection_diffusion.h include/code_saturne/cs_coupling.h include/code_saturne/cs_crystal_router.h -include/code_saturne/cs_ctwr_air_props.h include/code_saturne/cs_ctwr.h +include/code_saturne/cs_ctwr_air_props.h include/code_saturne/cs_dbg.h include/code_saturne/cs_defs.h include/code_saturne/cs_divergence.h +include/code_saturne/cs_domain.h include/code_saturne/cs_domain_boundary.h include/code_saturne/cs_domain_op.h include/code_saturne/cs_domain_setup.h -include/code_saturne/cs_domain.h include/code_saturne/cs_elec_model.h +include/code_saturne/cs_equation.h include/code_saturne/cs_equation_bc.h include/code_saturne/cs_equation_common.h include/code_saturne/cs_equation_iterative_solve.h include/code_saturne/cs_equation_param.h include/code_saturne/cs_equation_priv.h -include/code_saturne/cs_equation.h include/code_saturne/cs_evaluate.h include/code_saturne/cs_ext_neighborhood.h include/code_saturne/cs_f_interfaces.mod include/code_saturne/cs_face_viscosity.h include/code_saturne/cs_fan.h +include/code_saturne/cs_field.h include/code_saturne/cs_field_default.h include/code_saturne/cs_field_operator.h include/code_saturne/cs_field_pointer.h -include/code_saturne/cs_field.h include/code_saturne/cs_file.h -include/code_saturne/cs_flag_check.h include/code_saturne/cs_flag.h +include/code_saturne/cs_flag_check.h include/code_saturne/cs_fp_exception.h include/code_saturne/cs_fuel_incl.mod include/code_saturne/cs_gas_mix.h include/code_saturne/cs_geom.h -include/code_saturne/cs_gradient_perio.h include/code_saturne/cs_gradient.h +include/code_saturne/cs_gradient_perio.h include/code_saturne/cs_grid.h +include/code_saturne/cs_gui.h include/code_saturne/cs_gui_boundary_conditions.h include/code_saturne/cs_gui_conjugate_heat_transfer.h include/code_saturne/cs_gui_mesh.h include/code_saturne/cs_gui_mobile_mesh.h include/code_saturne/cs_gui_output.h include/code_saturne/cs_gui_particles.h include/code_saturne/cs_gui_radiative_transfer.h include/code_saturne/cs_gui_specific_physics.h include/code_saturne/cs_gui_util.h include/code_saturne/cs_gui_variables.h -include/code_saturne/cs_gui.h +include/code_saturne/cs_gwf.h include/code_saturne/cs_gwf_parameters.h include/code_saturne/cs_gwf_physical_properties.h include/code_saturne/cs_gwf_soil.h include/code_saturne/cs_gwf_tracer.h -include/code_saturne/cs_gwf.h -include/code_saturne/cs_halo_perio.h include/code_saturne/cs_halo.h +include/code_saturne/cs_halo_perio.h include/code_saturne/cs_head_losses.h include/code_saturne/cs_hho_builder.h include/code_saturne/cs_hho_scaleq.h include/code_saturne/cs_hho_stokes.h include/code_saturne/cs_hho_vecteq.h include/code_saturne/cs_hodge.h include/code_saturne/cs_interface.h include/code_saturne/cs_internal_coupling.h include/code_saturne/cs_interpolate.h include/code_saturne/cs_io.h +include/code_saturne/cs_join.h include/code_saturne/cs_join_intersect.h include/code_saturne/cs_join_merge.h include/code_saturne/cs_join_mesh.h include/code_saturne/cs_join_perio.h include/code_saturne/cs_join_post.h include/code_saturne/cs_join_set.h include/code_saturne/cs_join_split.h include/code_saturne/cs_join_update.h include/code_saturne/cs_join_util.h -include/code_saturne/cs_join.h +include/code_saturne/cs_lagr.h include/code_saturne/cs_lagr_adh.h include/code_saturne/cs_lagr_car.h include/code_saturne/cs_lagr_clogging.h include/code_saturne/cs_lagr_coupling.h include/code_saturne/cs_lagr_deposition_model.h include/code_saturne/cs_lagr_dlvo.h include/code_saturne/cs_lagr_extract.h include/code_saturne/cs_lagr_geom.h include/code_saturne/cs_lagr_gradients.h include/code_saturne/cs_lagr_head_losses.h include/code_saturne/cs_lagr_injection.h include/code_saturne/cs_lagr_lec.h include/code_saturne/cs_lagr_log.h include/code_saturne/cs_lagr_new.h include/code_saturne/cs_lagr_options.h include/code_saturne/cs_lagr_particle.h include/code_saturne/cs_lagr_poisson.h include/code_saturne/cs_lagr_post.h include/code_saturne/cs_lagr_precipitation_model.h include/code_saturne/cs_lagr_print.h include/code_saturne/cs_lagr_prototypes.h include/code_saturne/cs_lagr_query.h include/code_saturne/cs_lagr_restart.h include/code_saturne/cs_lagr_resuspension.h include/code_saturne/cs_lagr_roughness.h -include/code_saturne/cs_lagr_sde_model.h include/code_saturne/cs_lagr_sde.h +include/code_saturne/cs_lagr_sde_model.h include/code_saturne/cs_lagr_stat.h include/code_saturne/cs_lagr_tracking.h -include/code_saturne/cs_lagr.h include/code_saturne/cs_les_filter.h include/code_saturne/cs_les_inflow.h +include/code_saturne/cs_log.h include/code_saturne/cs_log_iteration.h include/code_saturne/cs_log_setup.h -include/code_saturne/cs_log.h include/code_saturne/cs_map.h include/code_saturne/cs_math.h +include/code_saturne/cs_matrix.h include/code_saturne/cs_matrix_assembler.h include/code_saturne/cs_matrix_building.h include/code_saturne/cs_matrix_default.h include/code_saturne/cs_matrix_priv.h include/code_saturne/cs_matrix_tuning.h include/code_saturne/cs_matrix_util.h -include/code_saturne/cs_matrix.h include/code_saturne/cs_measures_util.h +include/code_saturne/cs_mesh.h include/code_saturne/cs_mesh_adjacencies.h include/code_saturne/cs_mesh_bad_cells.h -include/code_saturne/cs_mesh_boundary_layer.h include/code_saturne/cs_mesh_boundary.h +include/code_saturne/cs_mesh_boundary_layer.h include/code_saturne/cs_mesh_builder.h include/code_saturne/cs_mesh_coherency.h include/code_saturne/cs_mesh_connect.h include/code_saturne/cs_mesh_deform.h include/code_saturne/cs_mesh_extrude.h include/code_saturne/cs_mesh_from_builder.h include/code_saturne/cs_mesh_group.h include/code_saturne/cs_mesh_halo.h include/code_saturne/cs_mesh_location.h include/code_saturne/cs_mesh_quality.h include/code_saturne/cs_mesh_quantities.h include/code_saturne/cs_mesh_refine.h include/code_saturne/cs_mesh_save.h include/code_saturne/cs_mesh_smoother.h include/code_saturne/cs_mesh_thinwall.h include/code_saturne/cs_mesh_to_builder.h include/code_saturne/cs_mesh_warping.h -include/code_saturne/cs_mesh.h include/code_saturne/cs_multigrid.h include/code_saturne/cs_navsto_coupling.h include/code_saturne/cs_navsto_param.h include/code_saturne/cs_navsto_system.h include/code_saturne/cs_numbering.h include/code_saturne/cs_nz_condensation.mod include/code_saturne/cs_nz_tagmr.mod include/code_saturne/cs_opts.h include/code_saturne/cs_order.h include/code_saturne/cs_parall.h -include/code_saturne/cs_param_cdo.h include/code_saturne/cs_param.h -include/code_saturne/cs_parameters_check.h +include/code_saturne/cs_param_cdo.h include/code_saturne/cs_parameters.h +include/code_saturne/cs_parameters_check.h include/code_saturne/cs_part_to_block.h include/code_saturne/cs_partition.h include/code_saturne/cs_physical_constants.h include/code_saturne/cs_physical_model.h include/code_saturne/cs_physical_properties.h +include/code_saturne/cs_post.h include/code_saturne/cs_post_default.h include/code_saturne/cs_post_util.h -include/code_saturne/cs_post.h include/code_saturne/cs_preprocess.h include/code_saturne/cs_preprocessor_data.h include/code_saturne/cs_probe.h include/code_saturne/cs_property.h include/code_saturne/cs_prototypes.h include/code_saturne/cs_quadrature.h +include/code_saturne/cs_rad_transfer.h include/code_saturne/cs_rad_transfer_absorption.h include/code_saturne/cs_rad_transfer_adf_models.h include/code_saturne/cs_rad_transfer_bcs.h include/code_saturne/cs_rad_transfer_dir.h include/code_saturne/cs_rad_transfer_fsck.h include/code_saturne/cs_rad_transfer_modak.h include/code_saturne/cs_rad_transfer_options.h include/code_saturne/cs_rad_transfer_property_fields.h include/code_saturne/cs_rad_transfer_pun.h include/code_saturne/cs_rad_transfer_restart.h include/code_saturne/cs_rad_transfer_solve.h include/code_saturne/cs_rad_transfer_source_terms.h include/code_saturne/cs_rad_transfer_wall_flux.h -include/code_saturne/cs_rad_transfer.h include/code_saturne/cs_random.h include/code_saturne/cs_range_set.h include/code_saturne/cs_rank_neighbors.h include/code_saturne/cs_reco.h include/code_saturne/cs_renumber.h include/code_saturne/cs_resource.h -include/code_saturne/cs_restart_default.h include/code_saturne/cs_restart.h +include/code_saturne/cs_restart_default.h include/code_saturne/cs_rotation.h include/code_saturne/cs_sat_coupling.h include/code_saturne/cs_scheme_geometry.h include/code_saturne/cs_sdm.h include/code_saturne/cs_search.h include/code_saturne/cs_selector.h include/code_saturne/cs_sla.h +include/code_saturne/cs_sles.h include/code_saturne/cs_sles_default.h include/code_saturne/cs_sles_it.h include/code_saturne/cs_sles_pc.h -include/code_saturne/cs_sles.h -include/code_saturne/cs_sort_partition.h include/code_saturne/cs_sort.h +include/code_saturne/cs_sort_partition.h include/code_saturne/cs_source_term.h include/code_saturne/cs_static_condensation.h include/code_saturne/cs_stokes_model.h -include/code_saturne/cs_syr_coupling.h include/code_saturne/cs_syr4_coupling.h +include/code_saturne/cs_syr_coupling.h include/code_saturne/cs_system_info.h include/code_saturne/cs_tagmr.mod include/code_saturne/cs_tagms.mod include/code_saturne/cs_thermal_model.h include/code_saturne/cs_time_moment.h include/code_saturne/cs_time_plot.h include/code_saturne/cs_time_step.h -include/code_saturne/cs_timer_stats.h include/code_saturne/cs_timer.h -include/code_saturne/cs_tree_xml.h +include/code_saturne/cs_timer_stats.h include/code_saturne/cs_tree.h +include/code_saturne/cs_tree_xml.h include/code_saturne/cs_turbomachinery.h include/code_saturne/cs_turbulence_bc.h include/code_saturne/cs_turbulence_model.h include/code_saturne/cs_volume_zone.h include/code_saturne/cs_wall_functions.h include/code_saturne/cs_walldistance.h +include/code_saturne/cs_xdef.h include/code_saturne/cs_xdef_cw_eval.h include/code_saturne/cs_xdef_eval.h -include/code_saturne/cs_xdef.h include/code_saturne/cs_zone.h include/code_saturne/cstnum.mod include/code_saturne/cstphy.mod include/code_saturne/ctincl.mod include/code_saturne/darcy_module.mod include/code_saturne/dimens.mod include/code_saturne/entsor.mod -include/code_saturne/field_operator.mod include/code_saturne/field.mod +include/code_saturne/field_operator.mod include/code_saturne/fvm_defs.h include/code_saturne/fvm_group.h include/code_saturne/fvm_io_num.h include/code_saturne/fvm_neighborhood.h +include/code_saturne/fvm_nodal.h include/code_saturne/fvm_nodal_append.h include/code_saturne/fvm_nodal_extract.h include/code_saturne/fvm_nodal_extrude.h include/code_saturne/fvm_nodal_from_desc.h include/code_saturne/fvm_nodal_order.h include/code_saturne/fvm_nodal_project.h include/code_saturne/fvm_nodal_triangulate.h -include/code_saturne/fvm_nodal.h 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