Index: head/biology/gemma/Makefile =================================================================== --- head/biology/gemma/Makefile (revision 501989) +++ head/biology/gemma/Makefile (revision 501990) @@ -1,44 +1,38 @@ # $FreeBSD$ -PORTNAME= GEMMA +PORTNAME= gemma DISTVERSION= 0.98.1 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org COMMENT= Genome-wide Efficient Mixed Model Association LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/LICENSE LIB_DEPENDS= libcblas.so:math/cblas \ libgsl.so:math/gsl USES= blaslapack:openblas compiler:c++11-lang eigen:3 gmake \ localbase:ldflags USE_GITHUB= yes GH_ACCOUNT= genetics-statistics +GH_PROJECT= GEMMA MAKEFILE= ${FILESDIR}/Makefile CXXFLAGS+= -I${LOCALBASE}/include/eigen3 -DOPENBLAS -DOPENBLAS_LEGACY LDFLAGS+= -lopenblas OPTIONS_DEFINE= EXAMPLES -.include - -# Force newer GCC on platforms using GCC 4.2 as base -.if ${CHOSEN_COMPILER_TYPE} == gcc -USE_GCC= yes -.endif - pre-configure: @${REINPLACE_CMD} -e 's|../bin/gemma|../gemma|' ${WRKSRC}/test/*.sh do-install-EXAMPLES-on: @${MKDIR} ${STAGEDIR}${EXAMPLESDIR} (cd ${WRKSRC}/example && ${COPYTREE_SHARE} . ${STAGEDIR}${EXAMPLESDIR}) do-test: (cd ${WRKSRC}/test && ${SH} test_suite.sh) -.include +.include