Index: head/biology/vsearch/Makefile
===================================================================
--- head/biology/vsearch/Makefile	(revision 501258)
+++ head/biology/vsearch/Makefile	(revision 501259)
@@ -1,32 +1,32 @@
 # $FreeBSD$
 
 PORTNAME=		vsearch
 DISTVERSIONPREFIX=	v
-DISTVERSION=		2.13.3
+DISTVERSION=		2.13.4
 CATEGORIES=		biology
 
 MAINTAINER=	jwb@FreeBSD.org
 COMMENT=	Versatile open-source tool for metagenomics
 
 LICENSE=	GPLv3
 LICENSE_FILE=	${WRKSRC}/LICENSE.txt
 
 # Note: For PPC need power8 or later, little endian
 ONLY_FOR_ARCHS=		aarch64 amd64
 ONLY_FOR_ARCHS_REASON=	Explicitly enumerated by upstream developers
 
 LIB_DEPENDS=	libsysinfo.so:devel/libsysinfo
 
 USES=		autoreconf gmake localbase
 USE_GITHUB=	yes
 
 GH_ACCOUNT=	torognes
 GNU_CONFIGURE=	yes
 
 PLIST_FILES=	bin/vsearch man/man1/vsearch.1.gz
 PORTDOCS=	*
 
 OPTIONS_DEFINE=	DOCS
 OPTIONS_SUB=	yes
 
 .include <bsd.port.mk>
Index: head/biology/vsearch/distinfo
===================================================================
--- head/biology/vsearch/distinfo	(revision 501258)
+++ head/biology/vsearch/distinfo	(revision 501259)
@@ -1,3 +1,3 @@
-TIMESTAMP = 1557339663
-SHA256 (torognes-vsearch-v2.13.3_GH0.tar.gz) = e5f34ece28b76403d3ba4a673eca41178fe399c35a1023dbc87d0c0da5efaa52
-SIZE (torognes-vsearch-v2.13.3_GH0.tar.gz) = 233846
+TIMESTAMP = 1557579514
+SHA256 (torognes-vsearch-v2.13.4_GH0.tar.gz) = 35269cbb10d1d2c33fdddd47ff4a5434eda1d4445fcc816bf4c57d7fe4740709
+SIZE (torognes-vsearch-v2.13.4_GH0.tar.gz) = 234364
Index: head/biology/vsearch/files/patch-src_vsearch.h
===================================================================
--- head/biology/vsearch/files/patch-src_vsearch.h	(revision 501258)
+++ head/biology/vsearch/files/patch-src_vsearch.h	(nonexistent)
@@ -1,67 +0,0 @@
-$NetBSD$
-
-# Add FreeBSD and NetBSD support
-
---- src/vsearch.h.orig	2019-04-30 11:57:32 UTC
-+++ src/vsearch.h
-@@ -138,30 +138,50 @@
- #define bswap_32(x) _byteswap_ulong(x)
- #define bswap_64(x) _byteswap_uint64(x)
- 
--#else
-+#elif defined(__APPLE__)
- 
--#ifdef __APPLE__
--
- #define PROG_OS "macos"
- #include <sys/sysctl.h>
- #include <libkern/OSByteOrder.h>
-+#include <sys/resource.h>
- #define bswap_16(x) OSSwapInt16(x)
- #define bswap_32(x) OSSwapInt32(x)
- #define bswap_64(x) OSSwapInt64(x)
- 
--#else
-+#elif defined(__linux__)
- 
--#ifdef __linux__
- #define PROG_OS "linux"
--#else
--#define PROG_OS "unknown"
--#endif
--
- #include <sys/sysinfo.h>
- #include <byteswap.h>
-+#include <sys/resource.h>
- 
--#endif
-+#elif defined(__FreeBSD__)
- 
-+#define PROG_OS "freebsd"
-+#include <sys/sysinfo.h>
-+#include <sys/resource.h>
-+#include <sys/endian.h>
-+#define bswap_16(x) bswap16(x)
-+#define bswap_32(x) bswap32(x)
-+#define bswap_64(x) bswap64(x)
-+
-+#elif defined(__NetBSD__)
-+
-+#define PROG_OS "netbsd"
-+#include <sys/resource.h>
-+#include <sys/types.h>
-+#include <sys/bswap.h>
-+#define bswap_16(x) bswap16(x)
-+#define bswap_32(x) bswap32(x)
-+#define bswap_64(x) bswap64(x)
-+// Alters behavior, but NetBSD 7 does not have getopt_long_only()
-+#define getopt_long_only getopt_long
-+
-+#else	// Other Unix
-+
-+#define PROG_OS "unknown"
-+#include <sys/sysinfo.h>
-+#include <byteswap.h>
- #include <sys/resource.h>
- 
- #endif

Property changes on: head/biology/vsearch/files/patch-src_vsearch.h
___________________________________________________________________
Deleted: fbsd:nokeywords
## -1 +0,0 ##
-yes
\ No newline at end of property
Deleted: svn:eol-style
## -1 +0,0 ##
-native
\ No newline at end of property
Deleted: svn:mime-type
## -1 +0,0 ##
-text/plain
\ No newline at end of property
Index: head/biology/vsearch/files/patch-src_city.cc
===================================================================
--- head/biology/vsearch/files/patch-src_city.cc	(revision 501258)
+++ head/biology/vsearch/files/patch-src_city.cc	(nonexistent)
@@ -1,20 +0,0 @@
-$NetBSD$
-
-# Portability
-
---- src/city.cc.orig	2019-04-30 11:57:32 UTC
-+++ src/city.cc
-@@ -60,6 +60,13 @@ static uint32 UNALIGNED_LOAD32(const char *p) {
- #define bswap_32(x) OSSwapInt32(x)
- #define bswap_64(x) OSSwapInt64(x)
- 
-+#elif defined(__FreeBSD__)
-+
-+#include <sys/endian.h>
-+
-+#define bswap_32(x) bswap32(x)
-+#define bswap_64(x) bswap64(x)
-+
- #elif defined(__NetBSD__)
- 
- #include <sys/types.h>

Property changes on: head/biology/vsearch/files/patch-src_city.cc
___________________________________________________________________
Deleted: fbsd:nokeywords
## -1 +0,0 ##
-yes
\ No newline at end of property
Deleted: svn:eol-style
## -1 +0,0 ##
-native
\ No newline at end of property
Deleted: svn:mime-type
## -1 +0,0 ##
-text/plain
\ No newline at end of property