Index: head/science/Makefile =================================================================== --- head/science/Makefile (revision 500580) +++ head/science/Makefile (revision 500581) @@ -1,325 +1,326 @@ # $FreeBSD$ # COMMENT = Scientific ports SUBDIR += 2d-rewriter SUBDIR += ALPSCore SUBDIR += InsightToolkit SUBDIR += PETSc SUBDIR += R-cran-AMORE SUBDIR += R-cran-DCluster SUBDIR += R-cran-Epi SUBDIR += R-cran-bayesm SUBDIR += R-cran-cmprsk SUBDIR += R-cran-e1071 SUBDIR += R-cran-eco SUBDIR += R-cran-epicalc SUBDIR += R-cran-etm SUBDIR += R-cran-fastICA SUBDIR += R-cran-kernlab SUBDIR += R-cran-snow SUBDIR += R-cran-som SUBDIR += R-cran-udunits2 SUBDIR += abinit SUBDIR += afni SUBDIR += agrum SUBDIR += aircraft-datcom SUBDIR += antioch SUBDIR += atom SUBDIR += atompaw SUBDIR += avogadro2 SUBDIR += avogadrolibs SUBDIR += bagel SUBDIR += bddsolve SUBDIR += berkeleygw SUBDIR += bodr SUBDIR += brian SUBDIR += buddy SUBDIR += cdcl SUBDIR += cdf SUBDIR += cdo SUBDIR += cgnslib SUBDIR += cgribex SUBDIR += checkmol SUBDIR += chemical-mime-data SUBDIR += chemps2 SUBDIR += chemtool SUBDIR += chemtool-devel SUBDIR += chrono SUBDIR += clhep SUBDIR += clipper SUBDIR += code_saturne SUBDIR += colt SUBDIR += coordgenlibs SUBDIR += coot SUBDIR += cp2k SUBDIR += cp2k-data SUBDIR += crf++ SUBDIR += dalton SUBDIR += datawarrior SUBDIR += dcl SUBDIR += devisor SUBDIR += dftbplus SUBDIR += dkh SUBDIR += dlib-cpp SUBDIR += dlpoly-classic SUBDIR += drawxtl SUBDIR += dvc SUBDIR += eccodes SUBDIR += elk SUBDIR += epte SUBDIR += erd SUBDIR += erkale SUBDIR += erkale-pseudopotentials SUBDIR += esys-particle SUBDIR += fastcap SUBDIR += fasthenry SUBDIR += fisicalab SUBDIR += fleur SUBDIR += fsom SUBDIR += fvcom SUBDIR += fvcom-mpi SUBDIR += gabedit SUBDIR += gamess-us SUBDIR += gchemutils SUBDIR += gdma SUBDIR += getdp SUBDIR += ghemical SUBDIR += ghmm SUBDIR += gnudatalanguage SUBDIR += gpaw-setups SUBDIR += gramps SUBDIR += grib_api SUBDIR += gromacs SUBDIR += gsmc SUBDIR += gtamsanalyzer SUBDIR += gwyddion SUBDIR += h5utils SUBDIR += h5z-zfp SUBDIR += harminv SUBDIR += hdf SUBDIR += hdf5 SUBDIR += hdf5-18 SUBDIR += healpix SUBDIR += hypre SUBDIR += iboview SUBDIR += isaac-cfd SUBDIR += jdftx SUBDIR += jmol SUBDIR += jstrack SUBDIR += kalzium SUBDIR += kst2 SUBDIR += lammps SUBDIR += lamprop SUBDIR += latte SUBDIR += libaec SUBDIR += libccp4 SUBDIR += libcint SUBDIR += libctl SUBDIR += libefp SUBDIR += libgeodecomp SUBDIR += libghemical SUBDIR += libgridxc SUBDIR += libint SUBDIR += libint2 SUBDIR += libkml SUBDIR += liblinear SUBDIR += libmsym SUBDIR += liboglappth SUBDIR += libquantum SUBDIR += libssm SUBDIR += libsvm SUBDIR += libsvm-python SUBDIR += libxc SUBDIR += liggghts SUBDIR += lm SUBDIR += luscus SUBDIR += madness SUBDIR += maeparser SUBDIR += massxpert SUBDIR += mbdyn SUBDIR += mcstas SUBDIR += mcstas-comps SUBDIR += mcxtrace SUBDIR += mcxtrace-comps SUBDIR += mdynamix SUBDIR += medit SUBDIR += meep SUBDIR += metaf2xml SUBDIR += metaphysicl SUBDIR += minc2 SUBDIR += mmdb2 SUBDIR += mmtf-cpp SUBDIR += mol2ps SUBDIR += molgif SUBDIR += molscript SUBDIR += molsketch SUBDIR += mpb SUBDIR += mpqc SUBDIR += msms SUBDIR += multiwfn SUBDIR += namd SUBDIR += netcdf SUBDIR += netcdf-cxx SUBDIR += netcdf-fortran SUBDIR += nifticlib SUBDIR += nwchem SUBDIR += nwchem-data SUBDIR += octopus SUBDIR += openbabel SUBDIR += openkim SUBDIR += openmx SUBDIR += opensim-core SUBDIR += opsin SUBDIR += p5-Algorithm-SVMLight SUBDIR += p5-Chemistry-3DBuilder SUBDIR += p5-Chemistry-Bond-Find SUBDIR += p5-Chemistry-Canonicalize SUBDIR += p5-Chemistry-Elements SUBDIR += p5-Chemistry-File-MDLMol SUBDIR += p5-Chemistry-File-Mopac SUBDIR += p5-Chemistry-File-PDB SUBDIR += p5-Chemistry-File-SLN SUBDIR += p5-Chemistry-File-SMARTS SUBDIR += p5-Chemistry-File-SMILES SUBDIR += p5-Chemistry-File-VRML SUBDIR += p5-Chemistry-File-XYZ SUBDIR += p5-Chemistry-FormulaPattern SUBDIR += p5-Chemistry-InternalCoords SUBDIR += p5-Chemistry-Isotope SUBDIR += p5-Chemistry-MacroMol SUBDIR += p5-Chemistry-MidasPattern SUBDIR += p5-Chemistry-Mok SUBDIR += p5-Chemistry-Mol SUBDIR += p5-Chemistry-Pattern SUBDIR += p5-Chemistry-Reaction SUBDIR += p5-Chemistry-Ring SUBDIR += p5-Geo-BUFR SUBDIR += p5-Geo-Coordinates-Converter SUBDIR += p5-Geo-Coordinates-Converter-iArea SUBDIR += p5-Geo-ReadGRIB SUBDIR += p5-Geo-WebService-Elevation-USGS SUBDIR += p5-Mcstas-Tools SUBDIR += p5-PerlMol SUBDIR += p5-Physics-Unit + SUBDIR += pagmo2 SUBDIR += paje SUBDIR += paraview SUBDIR += pcmsolver SUBDIR += pnetcdf SUBDIR += psychopy SUBDIR += pulseview SUBDIR += py-DendroPy SUBDIR += py-GPy SUBDIR += py-GPyOpt SUBDIR += py-MDAnalysis SUBDIR += py-MDAnalysisTests SUBDIR += py-OpenFermion SUBDIR += py-PyFR SUBDIR += py-PyQuante SUBDIR += py-ScientificPython SUBDIR += py-SimpleSpectral SUBDIR += py-abipy SUBDIR += py-asdf SUBDIR += py-ase SUBDIR += py-avogadrolibs SUBDIR += py-cdo SUBDIR += py-chempy SUBDIR += py-coards SUBDIR += py-dlib SUBDIR += py-geometer SUBDIR += py-gpaw SUBDIR += py-gsd SUBDIR += py-h5py SUBDIR += py-hcluster SUBDIR += py-kinematics SUBDIR += py-lifelines SUBDIR += py-mdp SUBDIR += py-mlpy SUBDIR += py-mmtf-python SUBDIR += py-molmod SUBDIR += py-netCDF4 SUBDIR += py-obspy SUBDIR += py-oddt SUBDIR += py-openpiv SUBDIR += py-paida SUBDIR += py-paramz SUBDIR += py-phono3py SUBDIR += py-phonopy SUBDIR += py-pupynere SUBDIR += py-pyaixi SUBDIR += py-pydicom SUBDIR += py-pygeodesy SUBDIR += py-pymatgen SUBDIR += py-pymol SUBDIR += py-pyosf SUBDIR += py-pysal SUBDIR += py-pyteomics SUBDIR += py-pyteomics.biolccc SUBDIR += py-qcelemental SUBDIR += py-qcengine SUBDIR += py-qspin SUBDIR += py-quantities SUBDIR += py-rmf SUBDIR += py-rmsd SUBDIR += py-scikit-fuzzy SUBDIR += py-scikit-learn SUBDIR += py-scikit-sparse SUBDIR += py-scimath SUBDIR += py-scipy SUBDIR += py-scoria SUBDIR += py-spglib SUBDIR += py-veusz SUBDIR += py-ws2300 SUBDIR += pybrain SUBDIR += pycdf SUBDIR += pynn SUBDIR += qbox SUBDIR += qcl SUBDIR += qmcpack SUBDIR += quantum-espresso SUBDIR += quantum-espresso-pseudopotentials SUBDIR += qwalk SUBDIR += rdkit SUBDIR += rmf SUBDIR += rubygem-ai4r SUBDIR += rubygem-cdo SUBDIR += rubygem-rgeo SUBDIR += rubygem-rgeo-geojson SUBDIR += rubygem-rgeo-proj4 SUBDIR += rubygem-rgeo-shapefile SUBDIR += rubygem-ruby-dcl SUBDIR += rubygem-ruby-netcdf SUBDIR += scidavis SUBDIR += siesta SUBDIR += sigrok-cli SUBDIR += sigrok-firmware SUBDIR += sigrok-firmware-fx2lafw SUBDIR += sigrok-firmware-utils SUBDIR += silo SUBDIR += simbody SUBDIR += simint SUBDIR += simlib SUBDIR += simsmith SUBDIR += sparta SUBDIR += spglib SUBDIR += step SUBDIR += svmlight SUBDIR += szip SUBDIR += teem SUBDIR += tfel SUBDIR += tinker SUBDIR += udunits SUBDIR += v_sim SUBDIR += vipster SUBDIR += vmd SUBDIR += voro++ SUBDIR += wannier90 SUBDIR += wxmacmolplt SUBDIR += xcrysden SUBDIR += xdrawchem SUBDIR += xfce4-equake-plugin SUBDIR += xmakemol SUBDIR += yoda .include Index: head/science/pagmo2/Makefile =================================================================== --- head/science/pagmo2/Makefile (nonexistent) +++ head/science/pagmo2/Makefile (revision 500581) @@ -0,0 +1,39 @@ +# $FreeBSD$ + +PORTNAME= pagmo2 +DISTVERSIONPREFIX= v +DISTVERSION= 2.10-161 +DISTVERSIONSUFFIX= -g0a589425 +CATEGORIES= science + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Platform to perform parallel computations of optimization tasks + +LICENSE= GPLv3 LGPL3 +LICENSE_COMB= dual +LICENSE_FILE_GPLv3= ${WRKSRC}/COPYING.gpl3 +LICENSE_FILE_LGPL3= ${WRKSRC}/COPYING.lgpl3 + +BUILD_DEPENDS= boost-libs>0:devel/boost-libs \ + Ipopt>0:math/ipopt \ + nlopt>0:math/nlopt +RUN_DEPENDS= boost-libs>0:devel/boost-libs \ + Ipopt>0:math/ipopt \ + nlopt>0:math/nlopt + +USES= cmake eigen:3,build,run +USE_GITHUB= yes +GH_ACCOUNT= esa + +NO_BUILD= yes +NO_ARCH= yes + +CMAKE_ON= PAGMO_WITH_EIGEN3 PAGMO_WITH_NLOPT PAGMO_WITH_IPOPT + +do-test: # tests fail to build: https://github.com/esa/pagmo2/issues/273 + @cd ${BUILD_WRKSRC} && \ + ${SETENV} ${CONFIGURE_ENV} ${CMAKE_BIN} ${CMAKE_ARGS} -DPAGMO_BUILD_TESTS:BOOL=ON ${CMAKE_SOURCE_PATH} && \ + ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} ${ALL_TARGET} && \ + ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} test + +.include Property changes on: head/science/pagmo2/Makefile ___________________________________________________________________ Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:keywords ## -0,0 +1 ## +FreeBSD=%H \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/science/pagmo2/distinfo =================================================================== --- head/science/pagmo2/distinfo (nonexistent) +++ head/science/pagmo2/distinfo (revision 500581) @@ -0,0 +1,3 @@ +TIMESTAMP = 1556692823 +SHA256 (esa-pagmo2-v2.10-161-g0a589425_GH0.tar.gz) = 947f11d7b09fcf9b88be1e3913d727eefb2c2e7dcb1d81f3bfa45d61ca7c3bd6 +SIZE (esa-pagmo2-v2.10-161-g0a589425_GH0.tar.gz) = 17709599 Property changes on: head/science/pagmo2/distinfo ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/science/pagmo2/pkg-descr =================================================================== --- head/science/pagmo2/pkg-descr (nonexistent) +++ head/science/pagmo2/pkg-descr (revision 500581) @@ -0,0 +1,6 @@ +pagmo (C++) is a scientific library for massively parallel optimization. It is +built around the idea of providing a unified interface to optimization +algorithms and to optimization problems and to make their deployment in +massively parallel environments easy. + +WWW: https://github.com/esa/pagmo2 Property changes on: head/science/pagmo2/pkg-descr ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/science/pagmo2/pkg-plist =================================================================== --- head/science/pagmo2/pkg-plist (nonexistent) +++ head/science/pagmo2/pkg-plist (revision 500581) @@ -0,0 +1,167 @@ +include/pagmo/algorithm.hpp +include/pagmo/algorithms/bee_colony.hpp +include/pagmo/algorithms/cmaes.hpp +include/pagmo/algorithms/compass_search.hpp +include/pagmo/algorithms/cstrs_self_adaptive.hpp +include/pagmo/algorithms/de.hpp +include/pagmo/algorithms/de1220.hpp +include/pagmo/algorithms/gaco.hpp +include/pagmo/algorithms/gwo.hpp +include/pagmo/algorithms/ihs.hpp +include/pagmo/algorithms/ipopt.hpp +include/pagmo/algorithms/mbh.hpp +include/pagmo/algorithms/moead.hpp +include/pagmo/algorithms/nlopt.hpp +include/pagmo/algorithms/not_population_based.hpp +include/pagmo/algorithms/nsga2.hpp +include/pagmo/algorithms/pso.hpp +include/pagmo/algorithms/pso_gen.hpp +include/pagmo/algorithms/sade.hpp +include/pagmo/algorithms/sea.hpp +include/pagmo/algorithms/sga.hpp +include/pagmo/algorithms/simulated_annealing.hpp +include/pagmo/algorithms/xnes.hpp +include/pagmo/archipelago.hpp +include/pagmo/config.hpp +include/pagmo/detail/cec2013_data.hpp +include/pagmo/detail/cec2014_data.hpp +include/pagmo/detail/constants.hpp +include/pagmo/detail/custom_comparisons.hpp +include/pagmo/detail/eigen.hpp +include/pagmo/detail/make_unique.hpp +include/pagmo/detail/prime_numbers.hpp +include/pagmo/detail/task_queue.hpp +include/pagmo/exceptions.hpp +include/pagmo/external/cereal/access.hpp +include/pagmo/external/cereal/archives/adapters.hpp +include/pagmo/external/cereal/archives/binary.hpp +include/pagmo/external/cereal/archives/json.hpp +include/pagmo/external/cereal/archives/portable_binary.hpp +include/pagmo/external/cereal/archives/xml.hpp +include/pagmo/external/cereal/cereal.hpp +include/pagmo/external/cereal/details/helpers.hpp +include/pagmo/external/cereal/details/polymorphic_impl.hpp +include/pagmo/external/cereal/details/polymorphic_impl_fwd.hpp +include/pagmo/external/cereal/details/static_object.hpp +include/pagmo/external/cereal/details/traits.hpp +include/pagmo/external/cereal/details/util.hpp +include/pagmo/external/cereal/external/base64.hpp +include/pagmo/external/cereal/external/rapidjson/allocators.h +include/pagmo/external/cereal/external/rapidjson/document.h +include/pagmo/external/cereal/external/rapidjson/encodedstream.h +include/pagmo/external/cereal/external/rapidjson/encodings.h +include/pagmo/external/cereal/external/rapidjson/error/en.h +include/pagmo/external/cereal/external/rapidjson/error/error.h +include/pagmo/external/cereal/external/rapidjson/filereadstream.h +include/pagmo/external/cereal/external/rapidjson/filewritestream.h +include/pagmo/external/cereal/external/rapidjson/fwd.h +include/pagmo/external/cereal/external/rapidjson/internal/biginteger.h +include/pagmo/external/cereal/external/rapidjson/internal/diyfp.h +include/pagmo/external/cereal/external/rapidjson/internal/dtoa.h +include/pagmo/external/cereal/external/rapidjson/internal/ieee754.h +include/pagmo/external/cereal/external/rapidjson/internal/itoa.h +include/pagmo/external/cereal/external/rapidjson/internal/meta.h +include/pagmo/external/cereal/external/rapidjson/internal/pow10.h +include/pagmo/external/cereal/external/rapidjson/internal/regex.h +include/pagmo/external/cereal/external/rapidjson/internal/stack.h +include/pagmo/external/cereal/external/rapidjson/internal/strfunc.h +include/pagmo/external/cereal/external/rapidjson/internal/strtod.h +include/pagmo/external/cereal/external/rapidjson/internal/swap.h +include/pagmo/external/cereal/external/rapidjson/istreamwrapper.h +include/pagmo/external/cereal/external/rapidjson/memorybuffer.h +include/pagmo/external/cereal/external/rapidjson/memorystream.h +include/pagmo/external/cereal/external/rapidjson/msinttypes/inttypes.h +include/pagmo/external/cereal/external/rapidjson/msinttypes/stdint.h +include/pagmo/external/cereal/external/rapidjson/ostreamwrapper.h +include/pagmo/external/cereal/external/rapidjson/pointer.h +include/pagmo/external/cereal/external/rapidjson/prettywriter.h +include/pagmo/external/cereal/external/rapidjson/rapidjson.h +include/pagmo/external/cereal/external/rapidjson/reader.h +include/pagmo/external/cereal/external/rapidjson/schema.h +include/pagmo/external/cereal/external/rapidjson/stream.h +include/pagmo/external/cereal/external/rapidjson/stringbuffer.h +include/pagmo/external/cereal/external/rapidjson/writer.h +include/pagmo/external/cereal/external/rapidxml/license.txt +include/pagmo/external/cereal/external/rapidxml/manual.html +include/pagmo/external/cereal/external/rapidxml/rapidxml.hpp +include/pagmo/external/cereal/external/rapidxml/rapidxml_iterators.hpp +include/pagmo/external/cereal/external/rapidxml/rapidxml_print.hpp +include/pagmo/external/cereal/external/rapidxml/rapidxml_utils.hpp +include/pagmo/external/cereal/macros.hpp +include/pagmo/external/cereal/types/array.hpp +include/pagmo/external/cereal/types/base_class.hpp +include/pagmo/external/cereal/types/bitset.hpp +include/pagmo/external/cereal/types/boost_variant.hpp +include/pagmo/external/cereal/types/chrono.hpp +include/pagmo/external/cereal/types/common.hpp +include/pagmo/external/cereal/types/complex.hpp +include/pagmo/external/cereal/types/concepts/pair_associative_container.hpp +include/pagmo/external/cereal/types/deque.hpp +include/pagmo/external/cereal/types/forward_list.hpp +include/pagmo/external/cereal/types/functional.hpp +include/pagmo/external/cereal/types/list.hpp +include/pagmo/external/cereal/types/map.hpp +include/pagmo/external/cereal/types/memory.hpp +include/pagmo/external/cereal/types/polymorphic.hpp +include/pagmo/external/cereal/types/queue.hpp +include/pagmo/external/cereal/types/set.hpp +include/pagmo/external/cereal/types/stack.hpp +include/pagmo/external/cereal/types/string.hpp +include/pagmo/external/cereal/types/tuple.hpp +include/pagmo/external/cereal/types/unordered_map.hpp +include/pagmo/external/cereal/types/unordered_set.hpp +include/pagmo/external/cereal/types/utility.hpp +include/pagmo/external/cereal/types/valarray.hpp +include/pagmo/external/cereal/types/vector.hpp +include/pagmo/external/fix_includes.txt +include/pagmo/io.hpp +include/pagmo/island.hpp +include/pagmo/islands/fork_island.hpp +include/pagmo/islands/thread_island.hpp +include/pagmo/pagmo.hpp +include/pagmo/population.hpp +include/pagmo/problem.hpp +include/pagmo/problems/ackley.hpp +include/pagmo/problems/cec2006.hpp +include/pagmo/problems/cec2009.hpp +include/pagmo/problems/cec2013.hpp +include/pagmo/problems/cec2014.hpp +include/pagmo/problems/decompose.hpp +include/pagmo/problems/dtlz.hpp +include/pagmo/problems/golomb_ruler.hpp +include/pagmo/problems/griewank.hpp +include/pagmo/problems/hock_schittkowsky_71.hpp +include/pagmo/problems/inventory.hpp +include/pagmo/problems/lennard_jones.hpp +include/pagmo/problems/luksan_vlcek1.hpp +include/pagmo/problems/minlp_rastrigin.hpp +include/pagmo/problems/rastrigin.hpp +include/pagmo/problems/rosenbrock.hpp +include/pagmo/problems/schwefel.hpp +include/pagmo/problems/translate.hpp +include/pagmo/problems/unconstrain.hpp +include/pagmo/problems/zdt.hpp +include/pagmo/rng.hpp +include/pagmo/serialization.hpp +include/pagmo/threading.hpp +include/pagmo/type_traits.hpp +include/pagmo/types.hpp +include/pagmo/utils/constrained.hpp +include/pagmo/utils/discrepancy.hpp +include/pagmo/utils/generic.hpp +include/pagmo/utils/gradients_and_hessians.hpp +include/pagmo/utils/hv_algos/hv_algorithm.hpp +include/pagmo/utils/hv_algos/hv_bf_approx.hpp +include/pagmo/utils/hv_algos/hv_bf_fpras.hpp +include/pagmo/utils/hv_algos/hv_hv2d.hpp +include/pagmo/utils/hv_algos/hv_hv3d.hpp +include/pagmo/utils/hv_algos/hv_hvwfg.hpp +include/pagmo/utils/hypervolume.hpp +include/pagmo/utils/multi_objective.hpp +lib/cmake/pagmo/FindEigen3.cmake +lib/cmake/pagmo/FindIPOPT.cmake +lib/cmake/pagmo/FindNLOPT.cmake +lib/cmake/pagmo/PagmoFindBoost.cmake +lib/cmake/pagmo/pagmo-config-version.cmake +lib/cmake/pagmo/pagmo-config.cmake +lib/cmake/pagmo/pagmo_export.cmake Property changes on: head/science/pagmo2/pkg-plist ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property