Index: head/science/rdkit/Makefile
===================================================================
--- head/science/rdkit/Makefile	(revision 497374)
+++ head/science/rdkit/Makefile	(revision 497375)
@@ -1,56 +1,56 @@
 # $FreeBSD$
 
 PORTNAME=	rdkit
 DISTVERSIONPREFIX=	Release_
-DISTVERSION=	2018_09_2
+DISTVERSION=	2018_09_3
 CATEGORIES=	science
 
 MAINTAINER=	yuri@FreeBSD.org
 COMMENT=	Collection of cheminformatics and machine-learning software
 
 LICENSE=	BSD3CLAUSE
 LICENSE_FILE=	${WRKSRC}/license.txt
 
 BUILD_DEPENDS=	catch>0:devel/catch \
 		flex:textproc/flex \
 		rapidjson>=0:devel/rapidjson
 LIB_DEPENDS=	libboost_system.so:devel/boost-libs
 
 USES=		bison:build cmake eigen:3 python
 USE_GITHUB=	yes
 GH_TUPLE=	schrodinger:maeparser:1.0.0:maeparser/External/CoordGen/maeparser \
 		schrodinger:coordgenlibs:ede3191:coordgenlibs/External/CoordGen/coordgenlibs
 USE_LDCONFIG=	yes
 
 CMAKE_OFF=	RDK_INSTALL_INTREE RDK_USE_FLEXBISON \
 		RDK_INSTALL_STATIC_LIBS RDK_SWIG_STATIC RDK_PGSQL_STATIC
 CMAKE_ARGS=	-DFREEBSD_DOCSDIR:PATH=${DOCSDIR} -DCATCH_DIR=${LOCALBASE}
 
 DATADIR=	${PREFIX}/share/RDKit
 DOCSDIR=	${PREFIX}/share/doc/RDKit
 
 PLIST_SUB=	SHLIB_VER=${PORTVERSION}
 
 OPTIONS_DEFINE=		PYTHON DOCS
 OPTIONS_DEFAULT=	PYTHON
 OPTIONS_SUB=		yes
 
 PYTHON_CMAKE_BOOL=	RDK_BUILD_PYTHON_WRAPPERS
 PYTHON_BUILD_DEPENDS=	${PYNUMPY}
 PYTHON_LIB_DEPENDS=	${PY_BOOST}
 PYTHON_RUN_DEPENDS=	${PYNUMPY} \
 			${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \
 			${PYTHON_PKGNAMEPREFIX}pillow>0:graphics/py-pillow@${PY_FLAVOR} \
 			${PYTHON_PKGNAMEPREFIX}reportlab>0:print/py-reportlab@${PY_FLAVOR}
 
 PORTDOCS=	*
 
 post-extract:
 	@${MKDIR} ${WRKSRC}/External/rapidjson-1.1.0
 	@cd ${WRKSRC}/External/rapidjson-1.1.0 && ${LN} -s ${LOCALBASE}/include/rapidjson include
 
 post-stage: # https://github.com/rdkit/rdkit/issues/2094
 	#@${MKDIR} ${STAGEDIR}${PREFIX}/lib/cmake
 	#@${MV} ${STAGEDIR}${PREFIX}/lib/*.cmake ${STAGEDIR}${PREFIX}/lib/cmake
 
 .include <bsd.port.mk>
Index: head/science/rdkit/distinfo
===================================================================
--- head/science/rdkit/distinfo	(revision 497374)
+++ head/science/rdkit/distinfo	(revision 497375)
@@ -1,7 +1,7 @@
-TIMESTAMP = 1550904051
-SHA256 (rdkit-rdkit-Release_2018_09_2_GH0.tar.gz) = 02d805c579797cdbe127fdcf659fb82e7ad4d3b29ecd421b995d2f87b69962d3
-SIZE (rdkit-rdkit-Release_2018_09_2_GH0.tar.gz) = 54644792
+TIMESTAMP = 1553998061
+SHA256 (rdkit-rdkit-Release_2018_09_3_GH0.tar.gz) = 3be20bade43657c0d74617ab99ca30f872eaaedc314a87f690ac38e5ef590224
+SIZE (rdkit-rdkit-Release_2018_09_3_GH0.tar.gz) = 54644917
 SHA256 (schrodinger-maeparser-1.0.0_GH0.tar.gz) = f21e49d25fda5fb2ba4d698f104aa3fbfdd131d92f0807f3e617c15ebfc314aa
 SIZE (schrodinger-maeparser-1.0.0_GH0.tar.gz) = 26292
 SHA256 (schrodinger-coordgenlibs-ede3191_GH0.tar.gz) = 85b1ab66647a523a87bee584533fa81315ea82fde42542aa59e1e08bdf734471
 SIZE (schrodinger-coordgenlibs-ede3191_GH0.tar.gz) = 3721485