Index: head/biology/p5-TrimGalore/Makefile =================================================================== --- head/biology/p5-TrimGalore/Makefile (revision 496775) +++ head/biology/p5-TrimGalore/Makefile (revision 496776) @@ -1,31 +1,31 @@ # $FreeBSD$ PORTNAME= TrimGalore DISTVERSION= 0.4.5 CATEGORIES= biology perl5 PKGNAMEPREFIX= p5- MAINTAINER= jwb@FreeBSD.org COMMENT= Wrapper around Cutadapt and FastQC for adapter and quality trimming LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/LICENSE RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}cutadapt>0:biology/py-cutadapt@${PY_FLAVOR} \ fastqc>0:biology/fastqc NO_ARCH= yes NO_BUILD= yes -USES= perl5 python:env shebangfix +USES= perl5 python:3.4+,env shebangfix SHEBANG_FILES= trim_galore USE_PERL5= run USE_GITHUB= yes GH_ACCOUNT= FelixKrueger do-install: ${INSTALL_SCRIPT} ${WRKSRC}/trim_galore ${STAGEDIR}${PREFIX}/bin cd ${WRKSRC} && ${COPYTREE_SHARE} test_files ${STAGEDIR}${DATADIR} .include Index: head/biology/py-cutadapt/Makefile =================================================================== --- head/biology/py-cutadapt/Makefile (revision 496775) +++ head/biology/py-cutadapt/Makefile (revision 496776) @@ -1,24 +1,24 @@ # $FreeBSD$ PORTNAME= cutadapt PORTVERSION= 1.18 CATEGORIES= biology python MASTER_SITES= CHEESESHOP PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= jwb@FreeBSD.org COMMENT= Trim adapters from high-throughput sequencing reads LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}xopen>=0.3.2:archivers/py-xopen@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}bz2file>=0.98:archivers/py-bz2file@${PY_FLAVOR} -USES= python +USES= python:3.4+ USE_PYTHON= autoplist concurrent distutils post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/cutadapt/*.so .include