Index: head/biology/bedtools/Makefile =================================================================== --- head/biology/bedtools/Makefile (revision 494553) +++ head/biology/bedtools/Makefile (revision 494554) @@ -1,31 +1,36 @@ # $FreeBSD$ PORTNAME= bedtools DISTVERSIONPREFIX= v DISTVERSION= 2.27.1 PORTREVISION= 2 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org COMMENT= Toolset for genome set arithmetic such as intersect, union LICENSE= GPLv2 LICENSE_FILE= ${WRKSRC}/LICENSE USES= compiler:c++11-lang gmake python USE_GITHUB= yes GH_ACCOUNT= arq5x GH_PROJECT= bedtools2 +post-extract: +# Avoid conflict with C++20 by adding .txt suffix + @${MV} ${WRKSRC}/src/utils/gzstream/version \ + ${WRKSRC}/src/utils/gzstream/version.txt + pre-build: @${REINPLACE_CMD} -e 's|python|${PYTHON_CMD}|g' ${WRKSRC}/Makefile @${REINPLACE_CMD} -e 's|@\$$(CXX)|$$(CXX)|g' \ ${WRKSRC}/*/Makefile \ ${WRKSRC}/*/*/Makefile \ ${WRKSRC}/*/*/*/Makefile \ ${WRKSRC}/*/*/*/*/Makefile post-install: ${STRIP_CMD} ${STAGEDIR}${PREFIX}/bin/bedtools .include