Index: head/biology/unanimity/Makefile
===================================================================
--- head/biology/unanimity/Makefile	(revision 493768)
+++ head/biology/unanimity/Makefile	(revision 493769)
@@ -1,43 +1,43 @@
 # $FreeBSD$
 
 PORTNAME=		unanimity
 DISTVERSIONPREFIX=	v
-DISTVERSION=		3.4.0
+DISTVERSION=		3.4.1
 CATEGORIES=		biology
 
 MAINTAINER=	jwb@FreeBSD.org
 COMMENT=	Pacific Biosciences consensus library and applications
 
 LICENSE=	BSD3CLAUSE
 LICENSE_FILE=	${WRKSRC}/LICENSE
 
 BROKEN_aarch64=		fails to compile: mmintrin.h:47:5: use of undeclared identifier '__builtin_ia32_emms'; did you mean '__builtin_isless'?
 
 # Very sensitive to pbbam and pbcopper versions!
 # Fully test new combinations and upgrade them together.
 BUILD_DEPENDS=	seqan>=2.4.0:biology/seqan \
 		swig30>=3.0:devel/swig30 \
 		${PYNUMPY}
 LIB_DEPENDS=	libhts.so:biology/htslib \
 		libboost_regex.so:devel/boost-libs \
 		libpbbam.so.0.18.0:biology/pbbam \
 		libpbcopper.so.0.4.1:biology/pbcopper
 RUN_DEPENDS=	${PYNUMPY}
 
 # Meson needs BOOST_ROOT=${LOCALBASE}
 # https://github.com/mesonbuild/meson/issues/2239
 USES=		compiler:c++14-lang localbase meson pkgconfig python:2.7
 USE_LDCONFIG=	yes
 USE_GITHUB=	yes
 GH_ACCOUNT=	PacificBiosciences
 
 CFLAGS_i386=	-msse2 -Wno-c++11-narrowing
 LDFLAGS+=	-lexecinfo
 
 post-install:
 	${RLN} ${STAGEDIR}${PREFIX}/lib/libunanimity.so.3.0.0 \
 		${STAGEDIR}${PREFIX}/lib/libunanimity.so.3.0
 	${RLN} ${STAGEDIR}${PREFIX}/lib/libunanimity.so.3.0.0 \
 		${STAGEDIR}${PREFIX}/lib/libunanimity.so.3
 
 .include <bsd.port.mk>
Index: head/biology/unanimity/distinfo
===================================================================
--- head/biology/unanimity/distinfo	(revision 493768)
+++ head/biology/unanimity/distinfo	(revision 493769)
@@ -1,3 +1,3 @@
-TIMESTAMP = 1550617512
-SHA256 (PacificBiosciences-unanimity-v3.4.0_GH0.tar.gz) = cb2fd361b2cae1196e710e4d0b8af3b03a7f09145f96ce8aa7d2aef2401ca8e0
-SIZE (PacificBiosciences-unanimity-v3.4.0_GH0.tar.gz) = 6493566
+TIMESTAMP = 1551014614
+SHA256 (PacificBiosciences-unanimity-v3.4.1_GH0.tar.gz) = fccb2cf14cdc324592724df5699a113a04ce6d4f40f00c68ca3df541e17b4f35
+SIZE (PacificBiosciences-unanimity-v3.4.1_GH0.tar.gz) = 6493661
Index: head/biology/unanimity/pkg-plist
===================================================================
--- head/biology/unanimity/pkg-plist	(revision 493768)
+++ head/biology/unanimity/pkg-plist	(revision 493769)
@@ -1,82 +1,82 @@
 bin/ChimeraLabeler
 bin/arrow
 bin/ccs
 bin/ccs_sim
 bin/gcpp
 bin/genomic_sim
 bin/variantCaller
 include/pacbio/UnanimityConfig.h
 include/pacbio/UnanimityVersion.h
 include/pacbio/align/AffineAlignment.h
 include/pacbio/align/AlignConfig.h
 include/pacbio/align/BandedAligner.h
 include/pacbio/align/BandedChainAlignment.h
 include/pacbio/align/ChainScorer.h
 include/pacbio/align/ChainSeeds.h
 include/pacbio/align/ChainSeedsConfig.h
 include/pacbio/align/FilterSeeds.h
 include/pacbio/align/FindSeeds.h
 include/pacbio/align/FindSeedsConfig.h
 include/pacbio/align/HomopolymerHasher.h
 include/pacbio/align/LinearAlignment.h
 include/pacbio/align/LocalAlignment.h
 include/pacbio/align/PairwiseAlignment.h
 include/pacbio/align/SeedScorer.h
 include/pacbio/align/SparseAlignment.h
 include/pacbio/align/internal/BCAlignBlocks.h
 include/pacbio/align/internal/BCAlignImpl.h
 include/pacbio/ccs/Consensus.h
 include/pacbio/ccs/ConsensusSettings.h
 include/pacbio/ccs/SparseAlignment.h
 include/pacbio/ccs/Whitelist.h
 include/pacbio/chimera/ChimeraLabel.h
 include/pacbio/chimera/ChimeraLabeler.h
 include/pacbio/chimera/ChimeraResultWriter.h
 include/pacbio/consensus/AbstractMatrix.h
 include/pacbio/consensus/Coverage.h
 include/pacbio/consensus/EasyReadScorer.h
 include/pacbio/consensus/Evaluator.h
 include/pacbio/consensus/Integrator.h
 include/pacbio/consensus/IntervalMask.h
 include/pacbio/consensus/MatrixViewConvention.h
 include/pacbio/consensus/ModelConfig.h
 include/pacbio/consensus/ModelSelection.h
 include/pacbio/consensus/Mutation.h
 include/pacbio/consensus/Polish.h
 include/pacbio/consensus/PolishResult.h
 include/pacbio/consensus/Template.h
 include/pacbio/consensus/internal/ModelInternalInitializer.h
 include/pacbio/data/ChemistryMapping.h
 include/pacbio/data/ChemistryTriple.h
 include/pacbio/data/Interval.h
 include/pacbio/data/IntervalTree.h
 include/pacbio/data/PlainOption.h
 include/pacbio/data/Read.h
 include/pacbio/data/ReadId.h
 include/pacbio/data/Sequence.h
 include/pacbio/data/State.h
 include/pacbio/data/StrandType.h
 include/pacbio/data/SubreadResultCounter.h
 include/pacbio/data/internal/BaseEncoding.h
 include/pacbio/data/internal/ConversionFunctions.h
 include/pacbio/denovo/PoaConsensus.h
 include/pacbio/denovo/PoaGraph.h
 include/pacbio/denovo/RangeFinder.h
 include/pacbio/denovo/SparsePoa.h
 include/pacbio/exception/CCSExceptions.h
 include/pacbio/exception/InvalidEvaluatorException.h
 include/pacbio/exception/ModelError.h
 include/pacbio/exception/StateError.h
 include/pacbio/io/Utility.h
 include/pacbio/parallel/WorkQueue.h
 include/pacbio/util/ExecUtils.h
 include/pacbio/util/Timer.h
 lib/libunanimity.so
 lib/libunanimity.so.3
 lib/libunanimity.so.3.0
 lib/libunanimity.so.3.0.0
 %%PYTHON_SITELIBDIR%%/ConsensusCore2.py
 %%PYTHON_SITELIBDIR%%/ConsensusCore2.pyc
-%%PYTHON_SITELIBDIR%%/ConsensusCore2.pyo
+%%PYTHON_SITELIBDIR%%/ConsensusCore2.%%PYTHON_PYOEXTENSION%%
 %%PYTHON_SITELIBDIR%%/_ConsensusCore2.so
 libdata/pkgconfig/unanimity.pc