Index: head/audio/csound/Makefile =================================================================== --- head/audio/csound/Makefile (revision 489411) +++ head/audio/csound/Makefile (revision 489412) @@ -1,187 +1,187 @@ # Created by: trevor # $FreeBSD$ PORTNAME= csound DISTVERSION= 6.12.2-83 DISTVERSIONSUFFIX= -gdf2edd269 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= audio lang MAINTAINER= yuri@FreeBSD.org COMMENT= Sound synthesizer LICENSE= LGPL21+ LICENSE_FILE= ${WRKSRC}/COPYING BUILD_DEPENDS= boost-libs>0:devel/boost-libs \ swig3.0:devel/swig30 \ gmm++>0:math/gmm++ LIB_DEPENDS= libsamplerate.so:audio/libsamplerate \ libsndfile.so:audio/libsndfile USES= alias bison cmake compiler:c++11-lib eigen:3 localbase ncurses python:2.7 USE_GITHUB= yes USE_LDCONFIG= yes CMAKE_ARGS= -DBUILD_CSOUNDVST:BOOL=OFF \ -DBUILD_PD_CLASS:BOOL=OFF \ -DPYTHON_MODULE_INSTALL_DIR:PATH="${PYTHONPREFIX_SITELIBDIR}" \ -DOPSYS:STRING="${OPSYS}" CMAKE_OFF= USE_ALSA BUILD_JAVA_INTERFACE BUILD_TESTS SSP_UNSAFE= yes BINARY_ALIAS= swig=swig3.0 LDFLAGS+= -lexecinfo SUB_FILES= pkg-message OPTIONS_DEFINE= CURL FLTK HDF5 NLS OPENMP PORTAUDIO PULSEAUDIO OPTIONS_GROUP= PLUGINS OPTIONS_GROUP_PLUGINS= BUCHLA CHUA DSSI EXCITER FAUST FLUIDSYNTH IMAGE JACK LUA LINALG OSC P5GLOVE PADSYNTH PLATEREV PVSGENDY SCANSYN SELECT SERIAL STACK STK WIIMOTE # Opcodes/CMakeLists.txt, Opcodes/stk/CMakeLists.txt OPTIONS_DEFAULT= FLTK OPENMP OPTIONS_DEFAULT+= BUCHLA CHUA DSSI EXCITER FAUST IMAGE JACK LINALG OSC P5GLOVE PADSYNTH PLATEREV SCANSYN SELECT SERIAL STACK STK # for PLUGINS OPTIONS_SUB= yes BUCHLA_DESC= Build the Buchla filter opcode BUCHLA_CMAKE_BOOL= BUILD_BUCHLA_OPCODES CHUA_DESC= Build the chua opcodes CHUA_CMAKE_BOOL= BUILD_CHUA_OPCODES CURL_CMAKE_BOOL= USE_CURL # see https://github.com/csound/csound/issues/1067 CURL_LIB_DEPENDS= libcurl.so:ftp/curl DSSI_DESC= Build DSSI opcodes DSSI_BUILD_DEPENDS= dssi>0:audio/dssi DSSI_LIB_DEPENDS= libdssialsacompat.so:audio/libdssialsacompat DSSI_RUN_DEPENDS= dssi>0:audio/dssi DSSI_CMAKE_BOOL= BUILD_DSSI_OPCODES DSSI_CFLAGS= -isystem ${LOCALBASE}/include/dssi EXCITER_DESC= Build the exciter opcode EXCITER_CMAKE_BOOL= BUILD_EXCITER_OPCODES FLTK_DESC= Build FLTK plugin and GUI FLTK_USE= XORG=ice,sm,x11,xext FLTK_LIB_DEPENDS= libfltk.so:x11-toolkits/fltk FLTK_CMAKE_ON= -DBUILD_WINSOUND:BOOL=ON FLTK_CMAKE_OFF= -DBUILD_CSOUND_AC:BOOL=OFF \ -DBUILD_VIRTUAL_KEYBOARD:BOOL=OFF \ -DUSE_FLTK:BOOL=OFF FAUST_DESC= Build the Faust opcodes FAUST_USES= ssl FAUST_LLVM_VERSION= 60 FAUST_BUILD_DEPENDS= faust>0:audio/faust FAUST_RUN_DEPENDS= faust>0:audio/faust \ llvm${FAUST_LLVM_VERSION}>0:devel/llvm${FAUST_LLVM_VERSION} FAUST_CMAKE_BOOL= BUILD_FAUST_OPCODES FAUST_CMAKE_ON= -DFAUST_LLVM_VERSION:STRING=${FAUST_LLVM_VERSION} FLUIDSYNTH_DESC= Building FluidSynth opcodes FLUIDSYNTH_LIB_DEPENDS= libfluidsynth.so:audio/fluidsynth FLUIDSYNTH_CMAKE_BOOL= BUILD_FLUID_OPCODES FLUIDSYNTH_BROKEN= FluidSynth 2.x is broken upstream: https://github.com/csound/csound/issues/1078#issuecomment-441459803 HDF5_DESC= Build HDF5 read/write opcodes HDF5_LIB_DEPENDS= libhdf5.so:science/hdf5 \ libsz.so:science/szip HDF5_CMAKE_BOOL= BUILD_HDF5_OPCODES JACK_DESC= Build the JACK related opcodes JACK_LIB_DEPENDS= libjack.so:audio/jack JACK_CMAKE_BOOL= BUILD_JACK_OPCODES USE_JACK LINALG_DESC= Build the linear algebra opcodes LINALG_CMAKE_BOOL= BUILD_LINEAR_ALGEBRA_OPCODES LINALG_CXXFLAGS= -DGMM_VERSION=x # workaround based on https://github.com/csound/csound/issues/1069#issuecomment-439648756 LUA_DESC= Build Lua Interface and opcodes LUA_LIB_DEPENDS= libluajit-5.1.so:lang/luajit LUA_CMAKE_OFF= -DBUILD_CSOUND_AC_LUA_INTERFACE:BOOL=OFF \ -DBUILD_LUA_INTERFACE:BOOL=OFF \ -DBUILD_LUA_OPCODES:BOOL=OFF NLS_USES= gettext NLS_CMAKE_OFF= -DGETTEXT_MSGFMT_EXECUTABLE:FILEPATH="" \ -DGETTEXT_MSGMERGE_EXECUTABLE:FILEPATH="" \ -DLIBINTL_LIBRARY:FILEPATH="" \ -DUSE_GETTEXT:BOOL=OFF OPENMP_CMAKE_BOOL= USE_OPEN_MP OSC_DESC= Build OSC opcodes OSC_LIB_DEPENDS= liblo.so:audio/liblo OSC_CMAKE_BOOL= BUILD_OSC_OPCODES PADSYNTH_DESC= Build the Padsynth opcode PADSYNTH_CMAKE_BOOL= BUILD_PADSYNTH_OPCODES IMAGE_DESC= Build Image opcodes IMAGE_LIB_DEPENDS= libpng.so:graphics/png IMAGE_CMAKE_BOOL= BUILD_IMAGE_OPCODES P5GLOVE_DESC= Build PortAudio I/O module P5GLOVE_CMAKE_BOOL= BUILD_P5GLOVE_OPCODES PORTAUDIO_DESC= Build PortAudio I/O module PORTAUDIO_LIB_DEPENDS= libportaudio.so:audio/portaudio PORTAUDIO_CMAKE_BOOL= USE_PORTAUDIO PULSEAUDIO_DESC= Build PulseAudio I/O module PULSEAUDIO_LIB_DEPENDS= libpulse-simple.so:audio/pulseaudio PULSEAUDIO_CMAKE_BOOL= USE_PULSEAUDIO PLATEREV_DESC= Build the platerev opcode PLATEREV_CMAKE_BOOL= BUILD_PLATEREV_OPCODES PVSGENDY_DESC= Build the pvsgendy opcode PVSGENDY_CMAKE_BOOL= BUILD_PVSGENDY_OPCODE SCANSYN_DESC= Build the select opcodes SCANSYN_CMAKE_BOOL= BUILD_SCANSYN_OPCODES SELECT_DESC= Build the select opcode SELECT_CMAKE_BOOL= BUILD_SELECT_OPCODE SERIAL_DESC= Build the serial opcode SERIAL_CMAKE_BOOL= BUILD_SERIAL_OPCODES STACK_DESC= Build the stack opcodes STACK_CMAKE_BOOL= BUILD_STACK_OPCODES STK_DESC= Build the stk opcodes STK_CMAKE_BOOL= BUILD_STK_OPCODES STK_LIB_DEPENDS= libstk-4.6.0.so:audio/stk WIIMOTE_DESC= Build the Wiimote opcodes WIIMOTE_CMAKE_BOOL= BUILD_WIIMOTE_OPCODES WIIMOTE_BROKEN= Need to port wiiuse: https://github.com/rpavlik/wiiuse post-patch: @${REINPLACE_CMD} -e \ 's|/usr/local|${LOCALBASE}|' \ ${WRKSRC}/InOut/CMakeLists.txt @${REINPLACE_CMD} -e \ 's|/usr/include/Python2.7|${PYTHON_INCLUDEDIR}| ; \ s|/usr/local|${LOCALBASE}| ; \ /linuxjoystick/s|^|#| ; \ s| dl)|)|' \ ${WRKSRC}/Opcodes/CMakeLists.txt @${REINPLACE_CMD} -e \ '/CMAKE_SYSTEM_NAME/s|"Linux"|"${OPSYS}"|' \ ${WRKSRC}/Frontends/CMakeLists.txt @${REINPLACE_CMD} -e \ 's| mixer)| csmixer)|' \ ${WRKSRC}/util/CMakeLists.txt .for i in Engine/auxfd.c H/prototyp.h OOps/diskin2.c OOps/dumpf.c \ Opcodes/partials.c Top/csound.c @${REINPLACE_CMD} -e \ 's|\([[:blank:]]fd\)\(close\)|\1__\2|' ${WRKSRC}/${i} .endfor post-install: @${LN} -sf libcsnd6.so.6.0 ${STAGEDIR}${PREFIX}/lib/libcsnd6.so.6 @${LN} -sf libcsound64.so.6.0 ${STAGEDIR}${PREFIX}/lib/libcsound64.so.6 post-install-FLTK-on: @${LN} -sf libCsoundAC.so.6.0 ${STAGEDIR}${PREFIX}/lib/libCsoundAC.so.6 .include Index: head/biology/kallisto/Makefile =================================================================== --- head/biology/kallisto/Makefile (revision 489411) +++ head/biology/kallisto/Makefile (revision 489412) @@ -1,34 +1,34 @@ # $FreeBSD$ PORTNAME= kallisto DISTVERSIONPREFIX= v DISTVERSION= 0.43.1 -PORTREVISION= 3 +PORTREVISION= 4 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org COMMENT= Quantify abundances of transcripts from RNA-Seq data LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/license.txt LIB_DEPENDS= libhdf5.so:science/hdf5 \ libsz.so:science/szip USES= cmake compiler:c++11-lang USE_GITHUB= yes GH_ACCOUNT= pachterlab SUB_FILES= kallisto-test PORTEXAMPLES= * PLIST_FILES= bin/kallisto EXAMPLES_PLIST_FILES= bin/kallisto-test OPTIONS_DEFINE= EXAMPLES post-install-EXAMPLES-on: ${INSTALL_SCRIPT} ${WRKDIR}/kallisto-test ${STAGEDIR}${PREFIX}/bin cd ${WRKSRC}/test && ${COPYTREE_SHARE} . ${STAGEDIR}${EXAMPLESDIR} .include Index: head/cad/freecad/Makefile =================================================================== --- head/cad/freecad/Makefile (revision 489411) +++ head/cad/freecad/Makefile (revision 489412) @@ -1,87 +1,87 @@ # $FreeBSD$ PORTNAME= FreeCAD DISTVERSION= 0.17-13541 # git rev-list --count DISTVERSIONSUFFIX= -g9948ee4f1 -PORTREVISION= 3 +PORTREVISION= 4 CATEGORIES= cad MAINTAINER= ports@FreeBSD.org COMMENT= General purpose 3D CAD modeller LICENSE= LGPL20+ LICENSE_FILE= ${WRKSRC}/COPYING DEPRECATED= Qt4 has been EOL since december 2015 EXPIRATION_DATE= 2019-03-15 BUILD_DEPENDS= pyside-rcc:devel/pyside-tools \ swig3.0:devel/swig30 LIB_DEPENDS= libexpat.so:textproc/expat2 \ libfreetype.so:print/freetype2 \ ${PY_BOOST} \ libpyside-python2.7.so:devel/pyside@${PY_FLAVOR} \ libCoin.so:graphics/Coin \ libpng.so:graphics/png \ libtiff.so:graphics/tiff \ libvtkFiltersTexture-6.2.so:math/vtk6 \ libTKernel.so:cad/opencascade \ libSoQt.so:x11-toolkits/soqt \ libxerces-c.so:textproc/xerces-c3 \ libboost_thread.so:devel/boost-libs \ libarea.so:devel/libarea \ libmed.so:french/med \ libshiboken-${PYTHON_VERSION}.so:devel/shiboken \ libhdf5.so:science/hdf5 RUN_DEPENDS= pivy>0:graphics/py-pivy@${PY_FLAVOR} USES= dos2unix compiler:c++11-lib cmake eigen:3 fortran jpeg \ python:2.7 localbase qt:4 USE_GITHUB= yes USE_XORG= ice sm x11 xext xt USE_GL= gl glu USE_QT= qmake_build corelib gui moc_build network opengl rcc_build \ uic_build svg xml webkit USE_LDCONFIG= yes DOS2UNIX_GLOB= *.txt *.h *.cpp *.py *.qss *.csv *.pov *.stp *.ui *.wrl *.WRL CMAKE_ARGS= -DOCC_INCLUDE_DIR="${LOCALBASE}/include/OpenCASCADE" # To be removed when french/med will be built against science/hdf5 LIB_DEPENDS+= libhdf5-18.so:science/hdf5-18 CMAKE_ARGS+= -DHDF5_FOUND="TRUE" -DHDF5_VERSION="1.8.17" \ -DHDF5_INCLUDE_DIRS="${LOCALBASE}/include/hdf5-18" \ -DCMAKE_CXX_FLAGS="-I${LOCALBASE}/include/hdf5-18" \ -DCMAKE_C_FLAGS="-I${LOCALBASE}/include/hdf5-18" \ -DHDF5_LIBRARIES="-lhdf5-18" CFLAGS+= -I${LOCALBASE}/include/hdf5-18 CMAKE_INSTALL_PREFIX= ${PREFIX}/${PORTNAME} OPTIONS_DEFINE= COLLADA COLLADA_DESC= Install pycollada for Collada files import COLLADA_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pycollada>0:graphics/py-pycollada@${PY_FLAVOR} DESKTOP_ENTRIES=${PORTNAME} "" "${PREFIX}/FreeCAD/data/freecad.svg" \ ${PORTNAME} "Engineering;" false post-patch: @${REINPLACE_CMD} -e '/sed/s,-i,& \\"\\",' \ ${WRKSRC}/cMake/FindPySide*Tools.cmake @${REINPLACE_CMD} -e 's,%%LOCALBASE%%,${LOCALBASE},' \ ${WRKSRC}/src/Gui/CMakeLists.txt @${REINPLACE_CMD} -e '/self\.rev/s/Unknown/${DISTVERSION:C/.*-//}/' \ ${WRKSRC}/src/Tools/SubWCRev.py pre-configure: # To be removed when french/med will be built against science/hdf5 @${REINPLACE_CMD} -e 's|find_package(HDF5 REQUIRED)|#find_package(HDF5 REQUIRED)|' \ ${WRKSRC}/CMakeLists.txt @${REINPLACE_CMD} -e 's|||' \ ${WRKSRC}/src/3rdParty/salomesmesh/inc/MED_Common.hxx post-install: ${LN} -s ../${PORTNAME}/bin/FreeCAD ${STAGEDIR}${LOCALBASE}/bin/FreeCAD ${LN} -s ../${PORTNAME}/bin/FreeCADCmd ${STAGEDIR}${LOCALBASE}/bin/FreeCADCmd .include Index: head/cad/gmsh/Makefile =================================================================== --- head/cad/gmsh/Makefile (revision 489411) +++ head/cad/gmsh/Makefile (revision 489412) @@ -1,69 +1,70 @@ # Created by: Pedro Giffuni # $FreeBSD$ PORTNAME= gmsh DISTVERSION= 4.0.7 +PORTREVISION= 1 CATEGORIES= cad MASTER_SITES= http://gmsh.info/src/ DISTNAME= ${PORTNAME}-${PORTVERSION}-source DIST_SUBDIR= gmsh MAINTAINER= ports@FreeBSD.org COMMENT= Automatic 3D finite element mesh generator LICENSE= AGPLv3+ APACHE20 GPLv3+ GPLv2+ LGPL21 LICENSE_COMB= multi LIB_DEPENDS= libfltk.so:x11-toolkits/fltk \ libfontconfig.so:x11-fonts/fontconfig \ libgmp.so:math/gmp \ libhdf5.so:science/hdf5 \ libpng.so:graphics/png \ libsz.so:science/szip RUN_DEPENDS= getdp:science/getdp USES= blaslapack compiler:c++11-lang cmake fortran gl jpeg tar:tgz USE_GL= gl glu USE_XORG= x11 xcursor xext xinerama xfixes xft xrender CMAKE_ARGS= -DCMAKE_SKIP_RPATH:BOOL=YES OPTIONS_DEFINE= CGNS DOCS MED OCC SHARED STATIC OPTIONS_DEFAULT= CGNS MED OCC OPTIONS_SUB= yes CGNS_DESC= Enable CGNS mesh import MED_DESC= Enable MED mesh and post file formats OCC_DESC= Enable OpenCASCADE geometrical models SHARED_DESC= Build shared library and install header files STATIC_DESC= Build static library PLIST_SUB= VER=${PORTVERSION} VE=${PORTVERSION:R} # TODO # Dependencies against PythonLibs, swig and petsc are found and registered if # installed # => add knobs to handle them. CGNS_CMAKE_BOOL= ENABLE_CGNS CGNS_LIB_DEPENDS= libcgns.so:science/cgnslib DOCS_CMAKE_BOOL= INSTALL_DOCS MED_CMAKE_BOOL= ENABLE_MED MED_LIB_DEPENDS= libmed.so:french/med OCC_CMAKE_BOOL= ENABLE_OCC OCC_CMAKE_ON= -DOCC_INC=${LOCALBASE}/include/OpenCASCADE OCC_LIB_DEPENDS= libopenblas.so:math/openblas libTKernel.so:cad/opencascade OCC_USES= gnome OCC_USE= gnome=cairo SHARED_CMAKE_BOOL= ENABLE_BUILD_SHARED SHARED_USE= LDCONFIG=yes STATIC_CMAKE_BOOL= ENABLE_BUILD_LIB post-patch: @${REINPLACE_CMD} -e "s|share/doc/gmsh|${DOCSDIR_REL}|" \ -e 's|share/man/man1|man/man1|' ${WRKSRC}/CMakeLists.txt post-install-SHARED-on: ${RM} -r ${STAGEDIR}/wrkdirs .include Index: head/devel/py-tables/Makefile =================================================================== --- head/devel/py-tables/Makefile (revision 489411) +++ head/devel/py-tables/Makefile (revision 489412) @@ -1,44 +1,44 @@ # Created by: ijliao@FreeBSD.org # $FreeBSD$ PORTNAME= tables PORTVERSION= 3.4.4 -PORTREVISION= 3 +PORTREVISION= 4 CATEGORIES= devel python MASTER_SITES= CHEESESHOP PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= wen@FreeBSD.org COMMENT= Hierarchical database for Python LICENSE= BSD3CLAUSE BUILD_DEPENDS= ${PYNUMPY} \ ${PYTHON_PKGNAMEPREFIX}numexpr>=1.4.1:math/py-numexpr@${PY_FLAVOR} LIB_DEPENDS= libhdf5.so:science/hdf5 \ liblzo2.so:archivers/lzo2 \ libucl.so:archivers/ucl RUN_DEPENDS:= ${BUILD_DEPENDS} CONFLICTS_BUILD= zstd # conflicting version of zstd is bundled USES= fortran python USE_PYTHON= autoplist concurrent distutils cython PORTEXAMPLES= * OPTIONS_DEFINE= PYREX EXAMPLES PYREX_DESC= Use code generated by Pyrex to build PYREX_BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pyrex>0:devel/pyrex@${PY_FLAVOR} post-patch: @${REINPLACE_CMD} -e "s,%%LOCALBASE%%,${LOCALBASE}," ${WRKSRC}/setup.py post-install: ${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/tables/*.so post-install-EXAMPLES-on: @${MKDIR} ${STAGEDIR}${EXAMPLESDIR} ${INSTALL_DATA} ${WRKSRC}/examples/*.py ${STAGEDIR}${EXAMPLESDIR} .include Index: head/graphics/alembic/Makefile =================================================================== --- head/graphics/alembic/Makefile (revision 489411) +++ head/graphics/alembic/Makefile (revision 489412) @@ -1,34 +1,35 @@ # Created by: Alexey Dokuchaev # $FreeBSD$ PORTNAME= alembic PORTVERSION= 1.7.10 +PORTREVISION= 1 CATEGORIES= graphics MAINTAINER= danfe@FreeBSD.org COMMENT= Open framework for storing and sharing graphic scene data LICENSE= BSD3CLAUSE LIB_DEPENDS= libImath.so:graphics/ilmbase USES= cmake compiler:c++11-lang USE_CXXSTD= c++11 USE_GITHUB= yes USE_LDCONFIG= yes OPTIONS_DEFINE= HDF5 OPTIONS_DEFAULT= HDF5 OPTIONS_SUB= yes HDF5_LIB_DEPENDS= libhdf5.so:science/hdf5 HDF5_CMAKE_ON= -DUSE_HDF5:BOOL=ON PLIST_FILES= lib/libAlembic.so.${PORTVERSION} \ lib/libAlembic.so.${PORTVERSION:R} post-patch: @${REINPLACE_CMD} -e 's,H5Rdereference,&1,' \ ${WRKSRC}/lib/Alembic/AbcCoreHDF5/HDF5Util.cpp .include Index: head/graphics/blender/Makefile =================================================================== --- head/graphics/blender/Makefile (revision 489411) +++ head/graphics/blender/Makefile (revision 489412) @@ -1,162 +1,162 @@ # Created by: Jimmy Olgeni # $FreeBSD$ PORTNAME= blender PORTVERSION= 2.79b -PORTREVISION= 9 +PORTREVISION= 10 CATEGORIES= graphics games MASTER_SITES= http://download.blender.org/source/ \ http://mirror.cs.umn.edu/blender.org/source/ \ http://public.planetmirror.com/pub/blender/source/ MAINTAINER= FreeBSD@Shaneware.biz COMMENT= 3D modeling/rendering/animation/gaming package LICENSE= GPLv3+ LICENSE_FILE= ${WRKSRC}/doc/license/GPL3-license.txt LIB_DEPENDS= libpng.so:graphics/png \ libfreetype.so:print/freetype2 \ libboost_regex.so:devel/boost-libs RUN_DEPENDS= ${PYNUMPY} # libboost_regex.so just acts as a placeholder; several boost # libraries are used, if either of the most common options in blender # are set. We will pull boost in just to be on the safe side. # USES=compiler is needed to support gcc built archs USES= cmake compiler:c++14-lang desktop-file-utils \ jpeg python:3.5 shebangfix USE_XORG= x11 xext xfixes xmu xrender USE_GL= gl glu glew INSTALLS_ICONS= yes # always enable c++11, this needs to be enabled for several options CMAKE_ON= WITH_CXX11 CMAKE_OFF= WITH_PYTHON_INSTALL WITH_PYTHON_INSTALL_NUMPY \ WITH_INSTALL_PORTABLE WITH_CYCLES_LOGGING SHEBANG_FILES= release/bin/blender-thumbnailer.py \ release/scripts/modules/bl_i18n_utils/merge_po.py \ release/scripts/modules/bl_i18n_utils/utils_rtl.py \ release/scripts/modules/blend_render_info.py CFLAGS_i386= -march=i586 CXXFLAGS_i386= -march=i586 PLIST_SUB+= VER=2.79 OPTIONS_SUB= yes .include "${.CURDIR}/Makefile.options" ALEMBIC_CMAKE_BOOL= WITH_ALEMBIC ALEMBIC_LIB_DEPENDS= libAlembic.so:graphics/alembic # note that this needs to be set to match alembics hdf5 option ALEMBIC_HDF5_REQUIRES= ALEMBIC ALEMBIC_HDF5_CMAKE_BOOL= WITH_ALEMBIC_HDF5 ALEMBIC_HDF5_LIB_DEPENDS= libhdf5.so:science/hdf5 AVI_CMAKE_BOOL= WITH_CODEC_AVI BULLET_CMAKE_BOOL= WITH_BULLET CAMERATRACK_CMAKE_BOOL= WITH_LIBMV CAMERATRACK_LIB_DEPENDS= libunwind.so:devel/libunwind CINEON_CMAKE_BOOL= WITH_IMAGE_CINEON COLLADA_CMAKE_BOOL= WITH_OPENCOLLADA COLLADA_LIB_DEPENDS= libOpenCOLLADABaseUtils.so:graphics/opencollada \ libpcre.so:devel/pcre COLLADA_USE= GNOME=libxml2 COMPOSITOR_CMAKE_BOOL= WITH_COMPOSITOR CYCLES_IMPLIES= OPENIMAGEIO CYCLES_CMAKE_BOOL= WITH_CYCLES CYCLESOSL_IMPLIES= CYCLES CYCLESOSL_CMAKE_BOOL= WITH_CYCLES_OSL WITH_LLVM CYCLESOSL_CMAKE_ON= -DLLVM_STATIC:BOOL=OFF \ -DLLVM_CONFIG:STRING="${LOCALBASE}/bin/llvm-config60" CYCLESOSL_BUILD_DEPENDS= llvm-config60:devel/llvm60 CYCLESOSL_LIB_DEPENDS= liboslcomp.so:graphics/openshadinglanguage CYCLESOSL_RUN_DEPENDS= llvm-config60:devel/llvm60 DDS_CMAKE_BOOL= WITH_IMAGE_DDS FFMPEG_CMAKE_BOOL= WITH_CODEC_FFMPEG FFMPEG_LIB_DEPENDS= libavutil.so:multimedia/ffmpeg FFTW3_CMAKE_BOOL= WITH_FFTW3 FFTW3_LIB_DEPENDS= libfftw3.so:math/fftw3 FRAMESERVER_CMAKE_BOOL= WITH_IMAGE_FRAMESERVER FREESTYLE_CMAKE_BOOL= WITH_FREESTYLE GAMEENGINE_CMAKE_BOOL= WITH_GAMEENGINE HDR_CMAKE_BOOL= WITH_IMAGE_HDR HEADLESS_PREVENTS= MENU XINPUT XF86VMODE HEADLESS_PREVENTS_MSG= X11 options can't be used in headless mode HEADLESS_CMAKE_BOOL= WITH_HEADLESS INPUT_NDOF_CMAKE_BOOL= WITH_INPUT_NDOF JACK_CMAKE_BOOL= WITH_JACK JACK_LIB_DEPENDS= libjack.so:audio/jack LZO_CMAKE_BOOL= WITH_LZO LZMA_CMAKE_BOOL= WITH_LZMA MENU_USES= desktop-file-utils MOD_BOOLEAN_CMAKE_BOOL= WITH_MOD_BOOLEAN MOD_FLUID_CMAKE_BOOL= WITH_MOD_FLUID MOD_OCEANSIM_IMPLIES= FFTW3 MOD_OCEANSIM_CMAKE_BOOL= WITH_MOD_OCEANSIM MOD_REMESH_CMAKE_BOOL= WITH_MOD_REMESH MOD_SMOKE_CMAKE_BOOL= WITH_MOD_SMOKE NLS_CMAKE_BOOL= WITH_INTERNATIONAL # Use iconv:wchar_t to force the usage of iconv from ports. # libboost_locale.so uses libiconv_open, while we only provide # iconv_open in 10.x+ NLS_USES= gettext iconv:lib,wchar_t OPENAL_CMAKE_BOOL= WITH_OPENAL OPENAL_USES= openal:al,alut OPENCOLORIO_CMAKE_BOOL= WITH_OPENCOLORIO OPENCOLORIO_LIB_DEPENDS= libOpenColorIO.so:graphics/opencolorio \ libyaml-cpp03.so:devel/yaml-cpp03 \ libtinyxml.so:textproc/tinyxml OPENEXR_CMAKE_BOOL= WITH_IMAGE_OPENEXR OPENEXR_LIB_DEPENDS= libIlmImf.so:graphics/openexr \ libHalf.so:graphics/ilmbase OPENIMAGEIO_IMPLIES= OPENEXR TIFF OPENIMAGEIO_CMAKE_BOOL= WITH_OPENIMAGEIO OPENIMAGEIO_LIB_DEPENDS= libOpenImageIO.so:graphics/openimageio OPENJPEG_CMAKE_BOOL= WITH_SYSTEM_OPENJPEG WITH_IMAGE_OPENJPEG OPENJPEG_LIB_DEPENDS= libopenjpeg.so:graphics/openjpeg15 # openmp usually works on amd64 #OPENMP_CMAKE_ON= -DWITH_OPENMP:BOOL=ON \ # -DOpenMP_C_FLAGS:STRING=-fopenmp -lm \ # -DOpenMP_CXX_FLAGS:STRING=-fopenmp -lm #OPENMP_CMAKE_OFF= -DWITH_OPENMP:BOOL=OFF #OPENMP_LIB_DEPENDS= libomp.so.0:devel/openmp #OPENMP_LDFLAGS= -L${LOCALBASE}/lib OPENSUBDIV_CMAKE_BOOL= WITH_OPENSUBDIV OPENSUBDIV_LIB_DEPENDS= libosdCPU.so:graphics/opensubdiv PLAYER_IMPLIES= GAMEENGINE PLAYER_CMAKE_BOOL= WITH_PLAYER RAYOPTIMIZATION_CMAKE_BOOL= WITH_RAYOPTIMIZATION SDL_CMAKE_BOOL= WITH_SDL SDL_USE= SDL=sdl2 SNDFILE_CMAKE_BOOL= WITH_CODEC_SNDFILE SNDFILE_LIB_DEPENDS= libsndfile.so:audio/libsndfile TIFF_CMAKE_BOOL= WITH_IMAGE_TIFF TIFF_LIB_DEPENDS= libtiff.so:graphics/tiff XINPUT_CMAKE_BOOL= WITH_X11_XINPUT XINPUT_USE= XORG=xi XF86VMODE_CMAKE_BOOL= WITH_X11_XF86VMODE XF86VMODE_USE= XORG=xi,xxf86vm .if defined(WITH_DEBUG) CMAKE_ARGS+= -DWITH_GHOST_DEBUG:BOOL=ON .endif post-patch-OPENCOLORIO-on: @${REINPLACE_CMD} -e 's|yaml-cpp|&03|' \ ${PATCH_WRKSRC}/build_files/cmake/Modules/FindOpenColorIO.cmake post-build: @(cd ${WRKSRC}/doc/manpage && \ ${PYTHON_CMD} blender.1.py \ ${INSTALL_WRKSRC}/bin/blender \ ${INSTALL_WRKSRC}/bin/${PORTNAME}.1) post-install-MENU-on: @-update-desktop-database -q post-install: ${INSTALL_MAN} ${INSTALL_WRKSRC}/bin/${PORTNAME}.1 \ ${STAGEDIR}${MAN1PREFIX}/man/man1 .include Index: head/graphics/caffe/Makefile =================================================================== --- head/graphics/caffe/Makefile (revision 489411) +++ head/graphics/caffe/Makefile (revision 489412) @@ -1,78 +1,78 @@ # $FreeBSD$ PORTNAME= caffe PORTVERSION= 1.0 -PORTREVISION= 18 +PORTREVISION= 19 CATEGORIES= graphics MAINTAINER= eric@camachat.org COMMENT= Fast open framework for deep learning LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE CONFLICTS_INSTALL= caffe2-* BUILD_DEPENDS= ${PYNUMPY} \ ${LOCALBASE}/include/cblas.h:math/cblas \ bash:shells/bash LIB_DEPENDS= libsnappy.so:archivers/snappy \ libleveldb.so:databases/leveldb \ liblmdb.so:databases/lmdb \ libboost_system.so:devel/boost-libs \ ${PY_BOOST} \ libgflags.so:devel/gflags \ libglog.so:devel/glog \ libprotobuf.so:devel/protobuf \ libopencv_highgui.so:graphics/opencv \ libopencv_core.so:graphics/opencv-core \ libopenblas.so:math/openblas \ libhdf5.so:science/hdf5 RUN_DEPENDS= ${PYNUMPY} \ ${PYTHON_PKGNAMEPREFIX}protobuf>=2.5.0:devel/py-protobuf@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-image>=0.12:graphics/py-scikit-image@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pillow>=1.7:graphics/py-pillow@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}networkx>=1.8:math/py-networkx@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>=1.1:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}PyWavelets>=0.4:math/py-PyWavelets@${PY_FLAVOR} USES= compiler:c++11-lib fortran gmake pkgconfig python:2.7 USE_CXXSTD= c++11 USE_LDCONFIG= yes USE_PYTHON= flavors cython CXXFLAGS+= -DGTEST_USE_OWN_TR1_TUPLE=1 LDFLAGS+= -DGTEST_USE_OWN_TR1_TUPLE=1 LDFLAGS+= -lboost_thread MAKE_ENV+= PYTHON_LIBRARIES="${PY_BOOST_LIB} ${PYTHON_VERSION}" MAKE_ARGS+= DISTRIBUTE_DIR=${STAGEDIR}${PREFIX} ALL_TARGET= all py INSTALL_TARGET= dist TEST_TARGET= runtest PLIST_SUB= PYTHON_SITELIBDIR=${PYTHON_SITELIBDIR} DATADIR=${DATADIR} GH_ACCOUNT= BVLC USE_GITHUB= yes post-extract: @${CP} -v ${.CURDIR}/files/Makefile.config ${WRKSRC}/ post-patch: @${REINPLACE_CMD} \ -e "s|%%CXX%%|clang++|g" \ -e "s|%%LOCALBASE%%|${LOCALBASE}|g" \ -e "s|%%DATADIR%%|${DATADIR}|g" \ -e "s|%%PYTHON_INCLUDEDIR%%|${PYTHON_INCLUDEDIR}|g" \ -e "s|%%PYTHON_SITELIBDIR%%|${PYTHON_SITELIBDIR}|g" \ -e "s|%%STAGEDIR%%|${STAGEDIR}|g" \ ${WRKSRC}/Makefile.config ${WRKSRC}/Makefile pre-install: @${MKDIR} ${STAGEDIR}${DATADIR} @${MKDIR} ${STAGEDIR}${PYTHON_SITELIBDIR} post-install: @${STRIP_CMD} ${STAGEDIR}/${PREFIX}/bin/* ${STAGEDIR}/${PREFIX}/lib/*.so.* \ ${STAGEDIR}/${PYTHON_SITELIBDIR}/${PORTNAME}/*.so .include Index: head/graphics/gdal/Makefile =================================================================== --- head/graphics/gdal/Makefile (revision 489411) +++ head/graphics/gdal/Makefile (revision 489412) @@ -1,139 +1,139 @@ # Created by: Randall Hopper # $FreeBSD$ PORTNAME= gdal PORTVERSION= 2.2.4 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= graphics geography MASTER_SITES= https://download.osgeo.org/gdal/${PORTVERSION}/ \ ftp://ftp.remotesensing.org/pub/gdal/${PORTVERSION}/ \ LOCAL/sunpoet MAINTAINER= sunpoet@FreeBSD.org COMMENT= Translator library for raster geospatial data formats LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE.TXT LIB_DEPENDS= libgeotiff.so:graphics/libgeotiff \ libgif.so:graphics/giflib \ libjson-c.so:devel/json-c \ libpng.so:graphics/png \ libproj.so:graphics/proj \ libtiff.so:graphics/tiff OPTIONS_DEFINE= ARMADILLO CFITSIO CURL ECW EXPAT FREEXL GEOS GTA HDF5 JASPER \ KML LIBXML2 MYSQL NETCDF ODBC OPENJPEG PCRE PGSQL SFCGAL \ SPATIALITE SQLITE WEBP XERCES OPTIONS_DEFAULT=JASPER OPTIONS_RADIO= PDF OPTIONS_RADIO_PDF= PODOFO POPPLER OPTIONS_SUB= yes PCRE_DESC= Regular expression support for SQLite CFLAGS+= -fPIC CONFIGURE_ARGS= --datadir=${DATADIR} \ --enable-static=yes \ --with-geotiff=yes \ --with-gif=yes \ --with-gnm=yes \ --with-jpeg=yes \ --with-libjson-c=yes \ --with-liblzma=yes \ --with-libtiff=yes \ --with-libz=/usr \ --with-png=yes \ --with-static-proj4=no \ --with-threads=yes \ --without-libtool \ ${ICONV_CONFIGURE_ARG} GNU_CONFIGURE= yes LDFLAGS+= ${ICONV_LIB} MAKE_JOBS_UNSAFE= yes MAKEFILE= GNUmakefile USE_LDCONFIG= yes USES= gmake iconv jpeg localbase tar:xz PLIST_SUB= PORTVERSION=${PORTVERSION} SLAVEDIRS= graphics/p5-Geo-GDAL graphics/py-gdal ARMADILLO_CONFIGURE_WITH= armadillo ARMADILLO_LIB_DEPENDS= libarmadillo.so:math/armadillo CFITSIO_CONFIGURE_WITH= cfitsio CFITSIO_LIB_DEPENDS= libcfitsio.so:astro/cfitsio CURL_CONFIGURE_OFF= --with-curl=no CURL_CONFIGURE_ON= --with-curl=${LOCALBASE}/bin/curl-config CURL_LIB_DEPENDS= libcurl.so:ftp/curl ECW_CONFIGURE_WITH= ecw ECW_LIB_DEPENDS= libNCSEcw.so:graphics/libecwj2 EXPAT_CONFIGURE_WITH= expat EXPAT_LIB_DEPENDS= libexpat.so:textproc/expat2 FREEXL_CONFIGURE_WITH= freexl FREEXL_LIB_DEPENDS= libfreexl.so:textproc/freexl GEOS_CONFIGURE_OFF= --with-geos=no GEOS_CONFIGURE_ON= --with-geos=${LOCALBASE}/bin/geos-config GEOS_LIB_DEPENDS= libgeos.so:graphics/geos GTA_CONFIGURE_WITH= gta GTA_LIB_DEPENDS= libgta.so:devel/libgta HDF5_CONFIGURE_WITH= hdf5 HDF5_LIB_DEPENDS= libhdf5.so:science/hdf5 JASPER_CONFIGURE_WITH= jasper JASPER_LIB_DEPENDS= libjasper.so:graphics/jasper KML_CONFIGURE_WITH= libkml KML_LIB_DEPENDS= libkmlbase.so:science/libkml LIBXML2_CONFIGURE_OFF= --with-xml2=no LIBXML2_CONFIGURE_ON= --with-xml2=${LOCALBASE}/bin/xml2-config LIBXML2_LIB_DEPENDS= libxml2.so:textproc/libxml2 MYSQL_CONFIGURE_OFF= --with-mysql=no MYSQL_CONFIGURE_ON= --with-mysql=${LOCALBASE}/bin/mysql_config MYSQL_USES= mysql NETCDF_CONFIGURE_WITH= netcdf NETCDF_LIB_DEPENDS= libnetcdf.so:science/netcdf ODBC_CONFIGURE_WITH= odbc ODBC_LIB_DEPENDS= libodbc.so:databases/unixODBC OPENJPEG_CONFIGURE_WITH=openjpeg OPENJPEG_LIB_DEPENDS= libopenjp2.so:graphics/openjpeg PCRE_CONFIGURE_WITH= pcre PCRE_LIB_DEPENDS= libpcre.so:devel/pcre PGSQL_CONFIGURE_OFF= --with-pg=no PGSQL_CONFIGURE_ON= --with-pg=${LOCALBASE}/bin/pg_config PGSQL_USES= pgsql PODOFO_CONFIGURE_WITH= podofo PODOFO_LIB_DEPENDS= libpodofo.so:graphics/podofo POPPLER_CONFIGURE_WITH= poppler=${LOCALBASE} POPPLER_LIB_DEPENDS= libpoppler.so:graphics/poppler SFCGAL_CONFIGURE_OFF= --with-sfcgal=no SFCGAL_CONFIGURE_ON= --with-sfcgal=${LOCALBASE}/bin/sfcgal-config SFCGAL_LIB_DEPENDS= libSFCGAL.so:databases/sfcgal SPATIALITE_CONFIGURE_WITH= spatialite SPATIALITE_LIB_DEPENDS= libspatialite.so:databases/spatialite SQLITE_CONFIGURE_WITH= sqlite3 SQLITE_USES= sqlite WEBP_CONFIGURE_WITH= webp WEBP_LIB_DEPENDS= libwebp.so:graphics/webp XERCES_CONFIGURE_WITH= xerces XERCES_LIB_DEPENDS= libxerces-c.so:textproc/xerces-c3 post-patch: @${REINPLACE_CMD} -e '/^#GDAL_SLIB_SONAME/ s|^#||' ${WRKSRC}/GDALmake.opt.in @${REINPLACE_CMD} -e 's|$$(INST_LIB)/pkgconfig|${PREFIX}/libdata/pkgconfig|; s| LICENSE.TXT||' ${WRKSRC}/GNUmakefile @${REINPLACE_CMD} -e 's|-lminizip|-lkmlminizip|' ${WRKSRC}/configure # Clean up bundled libraries @${RM} -r ${WRKSRC}/frmts/gif/giflib/ @${RM} -r ${WRKSRC}/frmts/gtiff/libgeotiff/ @${RM} -r ${WRKSRC}/frmts/gtiff/libtiff/ @${RM} -r ${WRKSRC}/frmts/jpeg/libjpeg/ @${RM} -r ${WRKSRC}/frmts/jpeg/libjpeg12/ @${RM} -r ${WRKSRC}/frmts/png/libpng/ @${RM} -r ${WRKSRC}/frmts/zlib/ @${RM} -r ${WRKSRC}/ogr/ogrsf_frmts/geojson/libjson/ post-install: cd ${WRKSRC}/gnm/ && ${INSTALL_DATA} gnm.h gnm_api.h gnm_priv.h gnmgraph.h ${STAGEDIR}${PREFIX}/include/ ${INSTALL_DATA} ${WRKSRC}/libgdal.a ${STAGEDIR}${PREFIX}/lib/ ${TOUCH} ${STAGEDIR}${PREFIX}/lib/gdalplugins/.keepme ${INSTALL_DATA} ${WRKSRC}/GDALmake.opt ${STAGEDIR}${DATADIR}/ ${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/libgdal.so.${PORTVERSION} .include Index: head/graphics/opencv/Makefile =================================================================== --- head/graphics/opencv/Makefile (revision 489411) +++ head/graphics/opencv/Makefile (revision 489412) @@ -1,414 +1,414 @@ # Created by: Marc Abramowitz (http://marc.abramowitz.info) # $FreeBSD$ PORTNAME= opencv PORTVERSION= 3.4.1 -PORTREVISION= 12 +PORTREVISION= 13 CATEGORIES= graphics MAINTAINER= ports@FreeBSD.org COMMENT= Open Source Computer Vision library LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE NOT_FOR_ARCHS= sparc64 NOT_FOR_ARCHS_REASON_sparc64= does not compile on sparc64 .if defined(OCV_CORE) BUILD_DEPENDS= protoc:devel/protobuf .else LIB_DEPENDS= libprotobuf.so:devel/protobuf \ libtesseract.so:graphics/tesseract .endif USES= cmake compiler:c++14-lang localbase:ldflags pkgconfig USE_GITHUB= yes USE_LDCONFIG= yes USE_CXXSTD= c++11 DATADIR= ${PREFIX}/share/OpenCV PLIST_SUB+= SOVERSION=${DISTVERSION:R} VERSION=${DISTVERSION} # 3rd party libs CMAKE_ON= ENABLE_CXX11 CMAKE_OFF= BUILD_ZLIB BUILD_TIFF BUILD_JASPER BUILD_JPEG BUILD_PNG BUILD_OPENEXR BUILD_TBB BUILD_IPP_IW BUILD_ITT BUILD_PROTOBUF # Optional 3rd party components CMAKE_ARGS+= -DWITH_1394:BOOL=OFF \ -DWITH_CAROTENE:BOOL=OFF \ -DWITH_CPUFEATURES:BOOL=OFF \ -DWITH_VTK:BOOL=OFF \ -DWITH_CUDA:BOOL=OFF \ -DWITH_CUFFT:BOOL=OFF \ -DWITH_CUBLAS:BOOL=OFF \ -DWITH_NVCUVID:BOOL=OFF \ -DWITH_EIGEN:BOOL=OFF \ -DWITH_VFW:BOOL=OFF \ -DWITH_FFMPEG:BOOL=OFF \ -DWITH_GSTREAMER:BOOL=OFF \ -DWITH_GSTREAMER_0_10:BOOL=OFF \ -DWITH_GTK:BOOL=OFF \ -DWITH_GTK_2_X:BOOL=ON \ -DWITH_IPP:BOOL=OFF \ -DWITH_IPP_A:BOOL=OFF \ -DWITH_HALIDE:BOOL=OFF \ -DWITH_JASPER:BOOL=OFF \ -DWITH_JPEG:BOOL=OFF \ -DWITH_WEBP:BOOL=OFF \ -DWITH_OPENEXR:BOOL=OFF \ -DWITH_OPENGL:BOOL=OFF \ -DWITH_OPENVX:BOOL=OFF \ -DWITH_OPENNI:BOOL=OFF \ -DWITH_OPENNI2:BOOL=OFF \ -DWITH_PNG:BOOL=OFF \ -DWITH_GDCM:BOOL=OFF \ -DWITH_PVAPI:BOOL=OFF \ -DWITH_GIGEAPI:BOOL=OFF \ -DWITH_ARAVIS:BOOL=OFF \ -DWITH_QT:BOOL=OFF \ -DWITH_WIN32UI:BOOL=OFF \ -DWITH_TBB:BOOL=OFF \ -DWITH_OPENMP:BOOL=OFF \ -DWITH_CSTRIPES:BOOL=ON \ -DWITH_PTHREADS_PF:BOOL=OFF \ -DWITH_TIFF:BOOL=OFF \ -DWITH_UNICAP:BOOL=OFF \ -DWITH_V4L:BOOL=OFF \ -DWITH_LIBV4L:BOOL=OFF \ -DWITH_DSHOW:BOOL=OFF \ -DWITH_MSMF:BOOL=OFF \ -DWITH_XIMEA:BOOL=OFF \ -DWITH_XINE:BOOL=OFF \ -DWITH_CLP:BOOL=OFF \ -DWITH_OPENCL:BOOL=OFF \ -DWITH_OPENCL_SVM:BOOL=OFF \ -DWITH_OPENCLAMDFFT:BOOL=OFF \ -DWITH_OPENCLAMDBLAS:BOOL=OFF \ -DWITH_DIRECTX:BOOL=OFF \ -DWITH_INTELPERC:BOOL=OFF \ -DWITH_MATLAB:BOOL=OFF \ -DWITH_VA:BOOL=OFF \ -DWITH_VA_INTEL:BOOL=OFF \ -DWITH_MFX:BOOL=OFF \ -DWITH_GDAL:BOOL=OFF \ -DWITH_GPHOTO2:BOOL=OFF \ -DWITH_LAPACK:BOOL=OFF \ -DWITH_ITT:BOOL=OFF # OpenCV build components CMAKE_ARGS+= -DBUILD_SHARED_LIBS:BOOL=ON \ -DBUILD_opencv_apps:BOOL=ON \ -DBUILD_opencv_js:BOOL=OFF \ -DBUILD_ANDROID_EXAMPLES:BOOL=OFF \ -DBUILD_DOCS:BOOL=OFF \ -DBUILD_EXAMPLES:BOOL=OFF \ -DBUILD_PACKAGE:BOOL=OFF \ -DBUILD_PERF_TESTS:BOOL=OFF \ -DBUILD_TESTS:BOOL=OFF \ -DBUILD_WITH_DEBUG_INFO:BOOL=OFF \ -DBUILD_WITH_DYNAMIC_IPP:BOOL=OFF \ -DBUILD_FAT_JAVA_LIB:BOOL=OFF \ -DBUILD_CUDA_STUBS:BOOL=OFF \ -DBUILD_ANDROID_SERVICE:BOOL=OFF \ -DBUILD_opencv_ts:BOOL=OFF \ -DBUILD_opencv_cnn_3dobj_INIT:BOOL=OFF \ -DBUILD_opencv_world:BOOL=OFF # OpenCV installation options CMAKE_ARGS+= -DINSTALL_CREATE_DISTRIB:BOOL=OFF \ -DINSTALL_C_EXAMPLES:BOOL=OFF \ -DINSTALL_PYTHON_EXAMPLES:BOOL=OFF \ -DINSTALL_TO_MANGLED_PATHS:BOOL=OFF \ -DINSTALL_TESTS:BOOL=OFF # OpenCV build options CMAKE_ARGS+= -DENABLE_CCACHE:BOOL=OFF \ -DENABLE_PRECOMPILED_HEADERS:BOOL=OFF \ -DENABLE_SOLUTION_FOLDERS:BOOL=OFF \ -DENABLE_PROFILING:BOOL=OFF \ -DENABLE_COVERAGE:BOOL=OFF \ -DENABLE_OMIT_FRAME_POINTER:BOOL=ON \ -DENABLE_POWERPC:BOOL=OFF \ -DENABLE_VSX:BOOL=OFF \ -DENABLE_FAST_MATH:BOOL=OFF \ -DENABLE_NEON:BOOL=OFF \ -DENABLE_VFPV3:BOOL=OFF \ -DENABLE_NOISY_WARNINGS:BOOL=OFF \ -DOPENCV_WARNINGS_ARE_ERRORS:BOOL=OFF \ -DENABLE_IMPL_COLLECTION:BOOL=OFF \ -DENABLE_INSTRUMENTATION:BOOL=OFF \ -DENABLE_GNU_STL_DEBUG:BOOL=OFF \ -DENABLE_BUILD_HARDENING:BOOL=OFF \ -DENABLE_LTO:BOOL=OFF \ -DGENERATE_ABI_DESCRIPTOR:BOOL=OFF \ -DCV_ENABLE_INTRINSICS:BOOL=ON \ -DCV_DISABLE_OPTIMIZATION:BOOL=OFF \ -DCV_TRACE:BOOL=OFF \ -DENABLE_PYLINT:BOOL=OFF SUB_FILES= FindOpenCVCore.cmake SUB_LIST= OCV_VERSION=${DISTVERSION} OCV_CORE_MODS= core imgproc OCV_MODS= apps calib3d contrib dnn features2d flann highgui \ imgcodecs ml objdetect photo shape stitching \ superres ts video videoio videostab OCV_JAVA_MODS= java OCV_PYTHON_MODS= python${PYTHON_MAJOR_VER} OPTIONS_DEFINE= EXAMPLES EXTRA_MODULES OPENGL OPTIONS_GROUP= PERFORMANCE IMAGE VIDEO OPTIONS_GROUP_PERFORMANCE= EIGEN3 OPENCL TBB OPTIONS_GROUP_IMAGE= GDAL GDCM JASPER JPEG OPENEXR PNG TIFF WEBP OPTIONS_GROUP_VIDEO= ARAVIS DC1394 FFMPEG GPHOTO2 GSTREAMER V4L XINE OPTIONS_RADIO= GUI OPTIONS_RADIO_GUI= GTK2 QT4 # EXTRA_MODULES required for libopencv_dnn which is required by py-opencv OPTIONS_DEFAULT= EIGEN3 EXTRA_MODULES FFMPEG JASPER JPEG PNG TIFF WEBP V4L \ ${MACHINE_CPU:tu} OPTIONS_SUB= yes .if defined(OCV_CORE) OPTIONS_EXCLUDE= ARAVIS DC1394 EXAMPLES EXTRA_MODULES FFMPEG \ GDAL GDCM GPHOTO2 GSTREAMER GTK2 JASPER JPEG \ OPENEXR OPENGL PNG QT4 TIFF WEBP V4L XINE .elif defined(OCV_SLAVE) OPTIONS_EXCLUDE= EXAMPLES .endif DC1394_DESC= IEEE 1394 camera support DC1394_LIB_DEPENDS= libdc1394.so:multimedia/libdc1394 DC1394_CMAKE_BOOL= WITH_1394 EXAMPLES_CMAKE_BOOL= INSTALL_C_EXAMPLES PERFORMANCE_DESC= Performance enhancing libraries EIGEN3_DESC= Eigen 3 support EIGEN3_BUILD_DEPENDS= ${LOCALBASE}/include/eigen3/Eigen/Eigen:math/eigen3 EIGEN3_CMAKE_BOOL= WITH_EIGEN OPENCL_DESC= OpenCL support OPENCL_BUILD_DEPENDS= opencl>=0:devel/opencl OPENCL_RUN_DEPENDS= opencl>=0:devel/opencl OPENCL_CMAKE_BOOL= WITH_OPENCL TBB_DESC= TBB support TBB_LIB_DEPENDS= libtbb.so:devel/tbb TBB_CMAKE_BOOL= WITH_TBB IMAGE_DESC= Image format support JASPER_LIB_DEPENDS= libjasper.so:graphics/jasper JASPER_CMAKE_BOOL= WITH_JASPER JPEG_USES= jpeg JPEG_CMAKE_BOOL= WITH_JPEG GDAL_DESC= Geospatial Data Abstraction Library GDAL_LIB_DEPENDS= libgdal.so:graphics/gdal GDAL_CMAKE_BOOL= WITH_GDAL GDCM_DESC= Open source DICOM library GDCM_LIB_DEPENDS= libgdcmMSFF.so:devel/gdcm GDCM_CMAKE_BOOL= WITH_GDCM OPENEXR_LIB_DEPENDS= libIlmImf.so:graphics/openexr OPENEXR_CMAKE_BOOL= WITH_OPENEXR PNG_LIB_DEPENDS= libpng.so:graphics/png PNG_CMAKE_BOOL= WITH_PNG TIFF_LIB_DEPENDS= libtiff.so:graphics/tiff TIFF_CMAKE_BOOL= WITH_TIFF WEBP_LIB_DEPENDS= libwebp.so:graphics/webp WEBP_CMAKE_BOOL= WITH_WEBP VIDEO_DESC= Video support ARAVIS_DESC= Aravis SDK ARAVIS_LIB_DEPENDS= libaravis-0.6.so:devel/libaravis ARAVIS_CMAKE_BOOL= WITH_ARAVIS FFMPEG_LIB_DEPENDS= libavcodec.so:multimedia/ffmpeg FFMPEG_CMAKE_BOOL= WITH_FFMPEG GPHOTO2_DESC= Gphoto2 camera support GPHOTO2_LIB_DEPENDS= libgphoto2.so:graphics/libgphoto2 GPHOTO2_CMAKE_BOOL= WITH_GPHOTO2 GSTREAMER_USE= GSTREAMER1=yes GSTREAMER_CMAKE_BOOL= WITH_GSTREAMER V4L_BUILD_DEPENDS= ${LOCALBASE}/include/linux/videodev2.h:multimedia/v4l_compat V4L_LIB_DEPENDS= libv4l2.so:multimedia/libv4l V4L_CMAKE_BOOL= WITH_V4L WITH_LIBV4L V4L_CMAKE_ON= CMAKE_REQUIRED_INCLUDES:STRING="${LOCALBASE}/include" XINE_LIB_DEPENDS= libxine.so:multimedia/libxine XINE_CMAKE_BOOL= WITH_XINE EXTRA_MODULES_DESC= Extra modules EXTRA_MODULES_GH_ACCOUNT= opencv:DEFAULT \ tiny-dnn:extra_mod_3rdparty_tiny_dnn EXTRA_MODULES_GH_PROJECT= opencv_contrib:extra_mod \ tiny-dnn:extra_mod_3rdparty_tiny_dnn \ opencv_3rdparty:extra_mod_3rdparty_face_landmark_model \ opencv_3rdparty:extra_mod_3rdparty_boost_descr \ opencv_3rdparty:extra_mod_3rdparty_vgg_descr EXTRA_MODULES_GH_TAGNAME= ${PORTVERSION}:extra_mod \ 2a2b50caa437a5964a61e45ffc83e70558e2bc68:extra_mod_3rdparty_tiny_dnn \ 8afa57abc8229d611c4937165d20e2a2d9fc5a12:extra_mod_3rdparty_face_landmark_model \ 34e4206aef44d50e6bbcd0ab06354b52e7466d26:extra_mod_3rdparty_boost_descr \ fccf7cd6a4b12079f73bbfb21745f9babcd4eb1d:extra_mod_3rdparty_vgg_descr EXTRA_MODULES_LIB_DEPENDS= libgflags.so:devel/gflags \ libglog.so:devel/glog \ libhdf5.so:science/hdf5 EXTRA_MODULES_EXTRA_PATCHES+= ${FILESDIR}/extra-patch-modules_dnn__modern_CMakeLists.txt \ ${FILESDIR}/extra-patch-modules_sfm_src__libmv__light_libmv_numeric_numeric.h \ ${FILESDIR}/extra-patch-modules_stereo_src_descriptor.cpp OPENGL_DESC= OpenGL (require QT or GTK2) OPENGL_CMAKE_BOOL= WITH_OPENGL OPENGL_LIB_DEPENDS= ${PORT_OPTIONS:MGTK2:C,.+,libgtkglext-x11-1.0.so:x11-toolkits/gtkglext,} OPENGL_USE= ${PORT_OPTIONS:MQT4:S,$,=opengl,} # GUI GTK2_USE= GNOME=cairo,gdkpixbuf2,gtk20 GTK2_CMAKE_BOOL= WITH_GTK GTK2_LIB_DEPENDS= libfreetype.so:print/freetype2 \ libharfbuzz.so:print/harfbuzz \ libsz.so:science/szip \ libfontconfig.so:x11-fonts/fontconfig \ liblept.so:graphics/leptonica QT4_USES= qt:4 QT4_USE= QT=corelib,gui,moc_build,qmake_build,rcc_build,uic_build,qtestlib QT4_CMAKE_ON= -DWITH_QT:STRING="4" QT4_CMAKE_OFF= -DWITH_QT:BOOL=OFF QT4_LIB_DEPENDS= libfreetype.so:print/freetype2 \ libharfbuzz.so:print/harfbuzz \ libsz.so:science/szip \ liblept.so:graphics/leptonica .if defined(OCV_CORE) . for module in ${OCV_MODS} ${OCV_JAVA_MODS} ${OCV_PYTHON_MODS} CMAKE_ARGS+= -DBUILD_opencv_${module}:BOOL=OFF . endfor .elif defined(OCV_PYTHON) LIB_DEPENDS+= libopencv_core.so:graphics/opencv-core \ libopencv_imgproc.so:graphics/opencv-core \ libopencv_ml.so:graphics/opencv BUILD_DEPENDS+= ${PYNUMPY} RUN_DEPENDS+= ${PYNUMPY} USES+= python:2.7 USE_PYTHON= flavors CMAKE_ARGS+= -DBUILD_opencv_python${PYTHON_MAJOR_VER}:BOOL=ON . for module in apps java stitching superres videostab CMAKE_ARGS+= -DBUILD_opencv_${module}:BOOL=OFF . endfor INSTALL_WRKSRC= ${WRKDIR}/.build/modules/python${PYTHON_MAJOR_VER} .elif defined(OCV_JAVA) BUILD_DEPENDS+= ant:devel/apache-ant LIB_DEPENDS+= libopencv_ml.so:graphics/opencv USES+= python:build USE_JAVA= yes CMAKE_ARGS+= -DBUILD_opencv_java:BOOL=ON . for module in apps python stitching superres videostab CMAKE_ARGS+= -DBUILD_opencv_${module}:BOOL=OFF . endfor CONFIGURE_ENV+= JAVA_HOME="${JAVA_HOME}" INSTALL_WRKSRC= ${WRKDIR}/.build/modules/java .else LIB_DEPENDS+= libopencv_core.so:graphics/opencv-core . for module in ${OCV_JAVA_MODS} ${OCV_PYTHON_MODS} CMAKE_ARGS+= -DBUILD_opencv_${module}:BOOL=OFF . endfor .endif .if !defined(OCV_JAVA) CMAKE_ARGS+= -DBUILD_JAVA:BOOL=OFF .endif .include .if ${PORT_OPTIONS:MQT4} DEPRECATED= Qt4 has been EOL since december 2015 EXPIRATION_DATE= 2019-03-15 .endif post-extract-EXTRA_MODULES-on: @${MV} ${WRKSRC_extra_mod}/doc/tutorials/* ${WRKSRC}/doc/tutorials/ @${MV} ${WRKSRC_extra_mod}/modules/* ${WRKSRC}/modules/ @${CP} -RpP ${WRKSRC_extra_mod}/samples/* ${WRKSRC}/samples/ @${MKDIR} ${CONFIGURE_WRKSRC}/3rdparty/tinydnn/tiny-dnn-1.0.0a3/ @${MV} ${WRKSRC_extra_mod_3rdparty_tiny_dnn}/* ${CONFIGURE_WRKSRC}/3rdparty/tinydnn/tiny-dnn-1.0.0a3/ @${MKDIR} ${CONFIGURE_WRKSRC}/share/OpenCV/testdata/cv/face/ @${MV} ${WRKSRC_extra_mod_3rdparty_face_landmark_model}/* ${CONFIGURE_WRKSRC}/share/OpenCV/testdata/cv/face/ @${MKDIR} ${CONFIGURE_WRKSRC}/downloads/xfeatures2d/ @${MV} ${WRKSRC_extra_mod_3rdparty_boost_descr}/* ${CONFIGURE_WRKSRC}/downloads/xfeatures2d/ @${MV} ${WRKSRC_extra_mod_3rdparty_vgg_descr}/* ${CONFIGURE_WRKSRC}/downloads/xfeatures2d/ post-patch: @${REINPLACE_CMD} -e '/pkgconfig/s|$${OPENCV_LIB_INSTALL_PATH}|libdata|' \ ${WRKSRC}/cmake/OpenCVGenPkgconfig.cmake @${REINPLACE_CMD} -e 's|$${OpenCV_SOURCE_DIR}/3rdparty/include/opencl/1.2|${LOCALBASE}/include/CL|g' \ ${WRKSRC}/cmake/OpenCVDetectOpenCL.cmake @${REINPLACE_CMD} -e 's|share/OpenCV/doc|${DOCSDIR_REL}|g' \ -e 's|share/OpenCV/samples|${EXAMPLESDIR_REL}|g' \ ${WRKSRC}/CMakeLists.txt @${REINPLACE_CMD} -e 's|||g' \ ${WRKSRC}/modules/dnn/src/torch/THGeneral.cpp .if defined(OCV_CORE) @${REINPLACE_CMD} -e 's|opencv.pc|opencv-core.pc|g' \ ${WRKSRC}/cmake/OpenCVGenPkgconfig.cmake @${REINPLACE_CMD} -e 's|Name:.*|Name: OpenCV-core|' \ ${WRKSRC}/cmake/templates/opencv-XXX.pc.in .endif .if defined(OCV_SLAVE) @${REINPLACE_CMD} -e 's|add_subdirectory(data)||g' \ ${WRKSRC}/CMakeLists.txt .endif @${FIND} ${WRKSRC} -name '*.bak' -exec ${RM} {} \; pre-build: protoc --proto_path=${WRKSRC}/modules/dnn/src/caffe/ --cpp_out=${WRKSRC}/modules/dnn/misc/caffe/ ${WRKSRC}/modules/dnn/src/caffe/*.proto protoc --proto_path=${WRKSRC}/modules/dnn/src/tensorflow/ --cpp_out=${WRKSRC}/modules/dnn/misc/tensorflow/ ${WRKSRC}/modules/dnn/src/tensorflow/*.proto post-install: .if !defined(OCV_SLAVE) (cd ${STAGEDIR}${PREFIX} && \ ${RM} -r include/opencv2/core include/opencv2/core.hpp include/opencv2/imgproc \ include/opencv2/imgproc.hpp \ include/opencv2/cvconfig.h lib/libopencv_core* lib/libopencv_imgproc*) .endif .if defined(OCV_CORE) ${RM} -r ${STAGEDIR}${PREFIX}/include/opencv ${RM} -r ${STAGEDIR}${DATADIR} ${MKDIR} ${STAGEDIR}${PREFIX}/share/cmake/Modules ${INSTALL_DATA} ${WRKDIR}/FindOpenCVCore.cmake ${STAGEDIR}${PREFIX}/share/cmake/Modules .endif .if defined(OCV_PYTHON) (cd ${STAGEDIR}${PREFIX} && \ ${PYTHON_CMD} ${PYTHON_LIBDIR}/compileall.py \ -d ${PYTHONPREFIX_SITELIBDIR} -f ${PYTHONPREFIX_SITELIBDIR:S|${PREFIX}/||} && \ ${PYTHON_CMD} -O ${PYTHON_LIBDIR}/compileall.py \ -d ${PYTHONPREFIX_SITELIBDIR} -f ${PYTHONPREFIX_SITELIBDIR:S|${PREFIX}/||}) ${MKDIR} ${STAGEDIR}${EXAMPLESDIR} cd ${WRKSRC}/samples/python && \ ${COPYTREE_SHARE} . ${STAGEDIR}${EXAMPLESDIR}/python .endif .if defined(OCV_JAVA) ${MKDIR} ${STAGEDIR}${EXAMPLESDIR} cd ${WRKSRC}/samples/java && \ ${COPYTREE_SHARE} . ${STAGEDIR}${EXAMPLESDIR}/java .endif .include .if !defined(OCV_CORE) .if (${OPSYS} == FreeBSD && ${OSVERSION} < 1200000) EXTRA_PATCHES+= ${FILESDIR}/extra-patch-modules_sfm_src_libmv__light_libmv_numeric_numeric.cc .endif .endif .include Index: head/graphics/openimageio/Makefile =================================================================== --- head/graphics/openimageio/Makefile (revision 489411) +++ head/graphics/openimageio/Makefile (revision 489412) @@ -1,108 +1,108 @@ # Created by: Shane Ambler # $FreeBSD$ PORTNAME= openimageio PORTVERSION= 1.8.17 DISTVERSIONPREFIX= Release- -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES?= graphics multimedia MAINTAINER?= FreeBSD@Shaneware.biz COMMENT?= OpenImageIO graphics library LICENSE= BSD3CLAUSE LIB_DEPENDS= libboost_thread.so:devel/boost-libs \ libImath.so:graphics/ilmbase \ libIlmImf.so:graphics/openexr \ libpng.so:graphics/png \ libtiff.so:graphics/tiff \ libwebp.so:graphics/webp \ libhdf5.so:science/hdf5 USES= cmake jpeg compiler:c++11-lib USE_GITHUB= yes GH_ACCOUNT= OpenImageIO GH_PROJECT= oiio # fbm also installs bin/idiff CONFLICTS= fbm-[0-9]* CMAKE_ARGS= USE_CPP:STRING=11 CMAKE_OFF= BUILDSTATIC LINKSTATIC NOTHREADS STOP_ON_WARNING USE_OPENSSL OPTIONS_DEFINE= DOCS FFMPEG FREETYPE GIF IMAGEVIEWER OCIO OPENCV \ OPENJPEG RAW TEST OPTIONS_DEFAULT= FREETYPE GIF OCIO OPENJPEG OPTIONS_SUB= yes DOCS_CMAKE_BOOL= INSTALL_DOCS DOCS_CMAKE_ON= -DCMAKE_INSTALL_DOCDIR:STRING=${DOCSDIR} FFMPEG_DESC= Use FFmpeg to support extra file types FFMPEG_CMAKE_BOOL= USE_FFMPEG FFMPEG_LIB_DEPENDS= libavutil.so:multimedia/ffmpeg FREETYPE_CMAKE_BOOL= USE_FREETYPE FREETYPE_CMAKE_ON= -DFONTS_INSTALL_DIR:STRING=share/fonts/oiio_dev FREETYPE_LIB_DEPENDS= libfreetype.so:print/freetype2 GIF_CMAKE_BOOL= USE_GIF GIF_LIB_DEPENDS= libgif.so:graphics/giflib IMAGEVIEWER_DESC= Build image viewer (requires Qt) IMAGEVIEWER_USES= qt:5 IMAGEVIEWER_CMAKE_BOOL= USE_QT USE_OPENGL IMAGEVIEWER_USE= GL=gl,glu,glew \ QT=buildtools,core,gui,opengl,qmake_build,widgets OCIO_DESC= Color management support OCIO_CMAKE_BOOL= USE_OCIO OCIO_LIB_DEPENDS= libOpenColorIO.so:graphics/opencolorio OPENCV_CMAKE_BOOL= USE_OPENCV OPENCV_LIB_DEPENDS= libopencv_highgui.so:graphics/opencv \ libopencv_core.so:graphics/opencv-core \ libopenjpeg.so:graphics/openjpeg15 OPENJPEG_CMAKE_BOOL= USE_OPENJPEG OPENJPEG_LIB_DEPENDS= libopenjp2.so:graphics/openjpeg RAW_CMAKE_BOOL= USE_LIBRAW RAW_LIB_DEPENDS= libraw_r.so:graphics/libraw TEST_CMAKE_BOOL= OIIO_BUILD_TESTS PLIST_SUB+= LIBVERS=${PORTVERSION} .include .if ${SLAVE_PORT} == yes LIB_DEPENDS+= libOpenImageIO.so:graphics/openimageio \ ${PY_BOOST} PLIST= ${PKGDIR}/pkg-plist-pybind USES+= python USE_PYTHON= flavors CMAKE_ON+= USE_PYTHON CMAKE_OFF+= OIIO_BUILD_TOOLS USE_FFMPEG CMAKE_ARGS+= -DPYTHON_VERSION:STRING=${PYTHON_VER} do-install: ${MKDIR} ${STAGEDIR}${PYTHON_SITELIBDIR} ${INSTALL_LIB} ${BUILD_WRKSRC}/src/python/OpenImageIO.so ${STAGEDIR}${PYTHON_SITELIBDIR} .else # SLAVE_PORT == no USE_LDCONFIG= yes CMAKE_ON+= DOIIO_BUILD_TOOLS CMAKE_OFF+= USE_PYTHON post-install: ${LN} -sf libOpenImageIO.so.1.8 \ ${STAGEDIR}${PREFIX}/lib/libOpenImageIO.so.1 ${LN} -sf libOpenImageIO_Util.so.1.8 \ ${STAGEDIR}${PREFIX}/lib/libOpenImageIO_Util.so.1 do-test-TEST-on: @cd ${BUILD_WRKSRC} && ${MAKE_CMD} ARGS=-V test .endif .include Index: head/graphics/vigra/Makefile =================================================================== --- head/graphics/vigra/Makefile (revision 489411) +++ head/graphics/vigra/Makefile (revision 489412) @@ -1,75 +1,76 @@ # Created by: cartola (Carlos E. G. Carvalho) # $FreeBSD$ PORTNAME= vigra DISTVERSIONPREFIX=v DISTVERSION= 1.11.1 +PORTREVISION= 1 CATEGORIES= graphics MAINTAINER= ports@FreeBSD.org COMMENT= VIGRA stands for "Vision with Generic Algorithms" LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE.txt LIB_DEPENDS= libHalf.so:graphics/ilmbase \ libsz.so:science/szip USES= cmake compiler:c++14-lang python:2.7,run shebangfix USE_GITHUB= yes GH_ACCOUNT= ukoethe GH_TAGNAME= 8acd73a USE_LDCONFIG= yes CMAKE_ARGS= -DDEPENDENCY_SEARCH_PREFIX:PATH=${LOCALBASE} \ -DDOCINSTALL:PATH=${DOCSDIR_REL} SHEBANG_FILES= config/vigra-config.in OPTIONS_DEFINE= HDF5 OPENEXR NUMPY DOCS FFTW OPTIONS_DEFAULT= HDF5 OPENEXR FFTW ${OPTIONS_GROUP_IMAGEFORMATS} OPTIONS_GROUP= IMAGEFORMATS OPTIONS_GROUP_IMAGEFORMATS= PNG JPEG TIFF OPTIONS_SUB= yes HDF5_CMAKE_BOOL= WITH_HDF5 HDF5_LIB_DEPENDS= libhdf5.so:science/hdf5 OPENEXR_CMAKE_BOOL= WITH_OPENEXR OPENEXR_LIB_DEPENDS= libIlmImf.so:graphics/openexr NUMPY_DESC= NumPy mathematical computing (USE Fortran/GCC47+) NUMPY_CMAKE_BOOL= WITH_VIGRANUMPY NUMPY_USES= compiler:gcc-c++11-lib python:2.7,build NUMPY_BUILD_DEPENDS= nosetests:devel/py-nose \ f2py:math/py-numpy NUMPY_RUN_DEPENDS= nosetests:devel/py-nose \ f2py:math/py-numpy NUMPY_LIB_DEPENDS= ${PY_BOOST} # On FreeBSD < 11 libc++ lacks support for sized delete operators. # GCC dropped the builtin version of these operators in 6+ by # defaulting to gnu++14. Force c++11 instead. # For a more detailed discussion see: # https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=219484 NUMPY_CXXFLAGS= -std=gnu++11 PNG_CMAKE_BOOL= WITH_PNG PNG_LIB_DPEENDS= libpng.so:graphics/png JPEG_CMAKE_BOOL= WITH_JPEG JPEG_USES= jpeg TIFF_CMAKE_BOOL= WITH_TIFF TIFF_LIB_DEPENDS= libtiff.so:graphics/tiff FFTW_CMAKE_BOOL= WITH_FFTW FFTW_LIB_DEPENDS= libfftw3.so:math/fftw3 \ libfftw3f.so:math/fftw3-float post-package-NUMPY-on: @${ECHO} "" @${ECHO} "* BEWARE!" @${ECHO} "* Using py-NumPY implies Fortran and GCC 4.7+ as hard dependencies" @${ECHO} "* and require all ports, depending on vigra, to set USE_GCC=yes" @${ECHO} "" .include Index: head/graphics/vips/Makefile =================================================================== --- head/graphics/vips/Makefile (revision 489411) +++ head/graphics/vips/Makefile (revision 489412) @@ -1,65 +1,65 @@ # Created by: Lev Serebryakov # $FreeBSD$ PORTNAME= vips PORTVERSION= 8.7.1 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= graphics MASTER_SITES= https://github.com/libvips/libvips/releases/download/v${PORTVERSION}/ MAINTAINER= danilo@FreeBSD.org COMMENT= Free image processing system LICENSE= LGPL21 LICENSE_FILE= ${WRKSRC}/COPYING RUN_DEPENDS= bash:shells/bash LIB_DEPENDS= libcfitsio.so:astro/cfitsio \ liborc-0.4.so:devel/orc \ libGraphicsMagick.so:graphics/GraphicsMagick \ libIlmImf.so:graphics/openexr \ liblcms2.so:graphics/lcms2 \ libexif.so:graphics/libexif \ libpng.so:graphics/png \ libtiff.so:graphics/tiff \ libwebp.so:graphics/webp \ libfftw3.so:math/fftw3 \ libmatio.so:math/matio \ libgirepository-1.0.so:devel/gobject-introspection \ libfontconfig.so:x11-fonts/fontconfig \ libfreetype.so:print/freetype2 \ libgif.so:graphics/giflib \ libpoppler-glib.so:graphics/poppler-glib \ libImath.so:graphics/ilmbase \ libhdf5.so:science/hdf5 \ libexpat.so:textproc/expat2 \ libcurl.so:ftp/curl USES= compiler:c++11-lang cpe gettext gmake gnome jpeg libtool \ pathfix pkgconfig python:2.7 shebangfix SHEBANG_FILES= tools/vips-${PORTVERSION:R} tools/vipsprofile USE_GNOME= cairo gdkpixbuf2 glib20 libgsf librsvg2 libxml2 pango GNU_CONFIGURE= yes CONFIGURE_ARGS+= --without-x \ --without-openslide \ --with-magickpackage=GraphicsMagick INSTALL_TARGET= install-strip USE_LDCONFIG= yes CPPFLAGS+= -I${LOCALBASE}/include LDFLAGS+= -L${LOCALBASE}/lib PLIST_SUB= VERSION="${PORTVERSION:R}" OPTIONS_DEFINE= DOCS PYTHON OPTIONS_DEFAULT= PYTHON OPTIONS_SUB= yes DOCS_CONFIGURE_ENABLE= gtk-doc gtk-doc-html DOCS_BUILD_DEPENDS= gtkdocize:textproc/gtk-doc PYTHON_CONFIGURE_ENABLE= pyvips8 PYTHON_USE= GNOME=pygobject3 .include Index: head/graphics/vv/Makefile =================================================================== --- head/graphics/vv/Makefile (revision 489411) +++ head/graphics/vv/Makefile (revision 489412) @@ -1,38 +1,38 @@ # $FreeBSD$ PORTNAME= vv DISTVERSIONPREFIX= v DISTVERSION= 1.4.0-271 DISTVERSIONSUFFIX= -g24b75af3 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= graphics MAINTAINER= yuri@FreeBSD.org COMMENT= Fast and simple 4D image viewer LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE.txt LIB_DEPENDS= libexpat.so:textproc/expat2 \ libfreetype.so:print/freetype2 \ libgdcmCommon.so:devel/gdcm \ libhdf5_cpp.so:science/hdf5 \ libITKLabelMap-4.13.so:science/InsightToolkit \ libpng16.so:graphics/png \ libsz.so:science/szip \ libtiff.so:graphics/tiff \ libvtkIOSQL-8.1.so:math/vtk8 USES= cmake compiler:c++11-lang jpeg qt:5 USE_GITHUB= yes GH_ACCOUNT= open-vv USE_QT= core designer gui network sql widgets xml buildtools_build qmake_build USE_XORG= ice sm x11 xext xt USE_CXXSTD= c++11 PLIST_FILES= bin/vv post-configure: # need to investigate where these strings come from @${REINPLACE_CMD} 's| -lGTest::GTest -lGTest::Main | |' ${BUILD_WRKSRC}/build.ninja .include Index: head/math/ambit/Makefile =================================================================== --- head/math/ambit/Makefile (revision 489411) +++ head/math/ambit/Makefile (revision 489412) @@ -1,30 +1,30 @@ # $FreeBSD$ PORTNAME= ambit DISTVERSIONPREFIX= v DISTVERSION= 0.2-37 DISTVERSIONSUFFIX= -g9c7049a -PORTREVISION= 5 +PORTREVISION= 6 CATEGORIES= math PKGNAMESUFFIX= -tensor # avoid clash with shells/ambit MAINTAINER= yuri@FreeBSD.org COMMENT= C++ library for tensor product calculations LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/COPYING LIB_DEPENDS= libhdf5.so:science/hdf5 \ libsz.so:science/szip USES= cmake compiler:c++11-lang USE_GCC= yes USE_GITHUB= yes GH_ACCOUNT= jturney # some declared cmake options do nothing: see https://github.com/jturney/ambit/issues/25 and the patch CMAKE_ARGS+= -DSHARED_ONLY:BOOL=ON CMAKE_ARGS+= -DENABLE_OPENMP:BOOL=ON # bug#223678: find_package(OpenMP) doesn't find the openmp package CMAKE_ARGS+= -DENABLE_TESTS:BOOL=OFF # https://github.com/jturney/ambit/issues/24 .include Index: head/math/armadillo/Makefile =================================================================== --- head/math/armadillo/Makefile (revision 489411) +++ head/math/armadillo/Makefile (revision 489412) @@ -1,28 +1,29 @@ # $FreeBSD$ PORTNAME= armadillo PORTVERSION= 9.200.6 +PORTREVISION= 1 CATEGORIES= math MASTER_SITES= SF/arma MAINTAINER= danilo@FreeBSD.org COMMENT= C++ linear algebra library LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE.txt BROKEN_powerpc64= Does not build LIB_DEPENDS= libboost_date_time.so:devel/boost-libs \ libopenblasp.so:math/openblas \ libarpack.so:math/arpack-ng \ libhdf5.so:science/hdf5 \ libsuperlu.so:math/superlu \ libsz.so:science/szip USES= blaslapack cmake compiler:c++11-lang pkgconfig tar:xz USE_LDCONFIG= yes CMAKE_ARGS+= -DPKG_CONFIG_DIR=${LOCALBASE}/libdata/pkgconfig/ .include Index: head/math/deal.ii/Makefile =================================================================== --- head/math/deal.ii/Makefile (revision 489411) +++ head/math/deal.ii/Makefile (revision 489412) @@ -1,92 +1,92 @@ # $FreeBSD$ PORTNAME= deal.II DISTVERSIONPREFIX= v DISTVERSION= 9.0.1 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= math MAINTAINER= yuri@FreeBSD.org COMMENT= Finite element Differential Equations Analysis Library (DEAL) LICENSE= GPLv2 LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${LOCALBASE}/include/boost/config.hpp:devel/boost-libs LIB_DEPENDS= libgoto2.so:math/gotoblas \ libhdf5.so:science/hdf5 \ libmetis.so:math/metis \ libtbb.so:devel/tbb USES= cmake compiler:c++17-lang localbase:ldflags USE_GITHUB= yes GH_ACCOUNT= ${PORTNAME:tl:S/.//} GH_PROJECT= ${PORTNAME:tl:S/.//} USE_LDCONFIG= yes CMAKE_OFF= DEAL_II_ALLOW_BUNDLED DEAL_II_COMPONENT_EXAMPLES \ DEAL_II_WITH_P4EST DEAL_II_WITH_TRILINOS DEAL_II_WITH_UMFPACK \ DEAL_II_WITH_NANOFLANN DEAL_II_WITH_MUPARSER DEAL_II_WITH_ASSIMP \ DEAL_II_WITH_HDF5 OPTIONS_DEFINE= ADOLC ARPACK GSL LAPACK MPI NETCDF OPENCASCADE PETSC SCALAPACK SLEPC SUNDIALS OPTIONS_DEFAULT= GSL LAPACK SUNDIALS ADOLC_DESC= Compile with ADOL-C ADOLC_CMAKE_BOOL= DEAL_II_WITH_ADOLC ADOLC_LIB_DEPENDS= libadolc.so:math/adol-c ADOLC_BROKEN= requires the development version: see https://github.com/dealii/dealii/issues/7293 ARPACK_DESC= Compile with Arpack and PArpack (only with MPI, LAPACK) ARPACK_CMAKE_BOOL= DEAL_II_WITH_ARPACK ARPACK_CMAKE_ON= -DARPACK_LINKER_FLAGS:STRING="${LDFLAGS}" ARPACK_BUILD_DEPENDS= arpack-ng>0:math/arpack-ng ARPACK_RUN_DEPENDS= arpack-ng>0:math/arpack-ng # itself doesn't link to arpack, but makes depending project link to it ARPACK_IMPLIES= LAPACK GSL_DESC= Compile with gsl GSL_CMAKE_BOOL= DEAL_II_WITH_GSL GSL_LIB_DEPENDS= libgsl.so:math/gsl LAPACK_DESC= Compile with LAPACK for matrix operations LAPACK_USES= fortran LAPACK_CMAKE_BOOL= DEAL_II_WITH_LAPACK LAPACK_CMAKE_ON= -DLAPACK_LINKER_FLAGS:STRING="${LDFLAGS}" LAPACK_LIB_DEPENDS= libopenblas.so:math/openblas MPI_USES= fortran MPI_CMAKE_BOOL= DEAL_II_WITH_MPI MPI_CMAKE_ON= -DMPI_LINKER_FLAGS:STRING="${LDFLAGS}" MPI_LIB_DEPENDS= libboost_iostreams.so:devel/boost-libs \ libmpi.so:net/openmpi MPI_BROKEN= Could not find any suitable mpi library! (need to investigate) NETCDF_DESC= Compile with Netcdf (only with MPI) NETCDF_CMAKE_BOOL= DEAL_II_WITH_NETCDF NETCDF_CMAKE_ON= -DNETCDF_INCLUDE_DIR:STRING=${LOCALBASE}/include -DNETCDF_CPLUSPLUS_LIBRARY:STRING=${LOCALBASE}/lib/libnetcdf_c++4.so NETCDF_BROKEN= see https://github.com/dealii/dealii/issues/7263 OPENCASCADE_DESC= Compile with OpenCascade OPENCASCADE_CMAKE_BOOL= DEAL_II_WITH_OPENCASCADE OPENCASCADE_CMAKE_ON= -DOPENCASCADE_INCLUDE_DIR:STRING=${LOCALBASE}/include/OpenCASCADE OPENCASCADE_LIB_DEPENDS= libTKernel.so:cad/opencascade PETSC_DESC= Compile with Petsc (only with MPI) PETSC_CMAKE_BOOL= DEAL_II_WITH_PETSC PETSC_LIB_DEPENDS= libpetsc.so:science/PETSc PETSC_BROKEN= see https://github.com/dealii/dealii/issues/7260 SCALAPACK_DESC= Compile with ScaLAPACK (only with MPI) SCALAPACK_CMAKE_BOOL= DEAL_II_WITH_SCALAPACK SCALAPACK_IMPLIES= MPI LAPACK SLEPC_DESC= Compile with SLEPC (only with PETSC) SLEPC_CMAKE_BOOL= DEAL_II_WITH_SLEPC SLEPC_LIB_DEPENDS= libslepc.so:math/slepc SLEPC_IMPLIES= PETSC SUNDIALS_DESC= Compile with SUNDIALS SUNDIALS_CMAKE_BOOL= DEAL_II_WITH_SUNDIALS SUNDIALS_LIB_DEPENDS= libsundials_arkode.so:math/sundials .include Index: head/math/dynare/Makefile =================================================================== --- head/math/dynare/Makefile (revision 489411) +++ head/math/dynare/Makefile (revision 489412) @@ -1,57 +1,57 @@ # $FreeBSD$ PORTNAME= dynare DISTVERSION= 4.5.6 -PORTREVISION= 4 +PORTREVISION= 5 CATEGORIES= math MASTER_SITES= http://www.dynare.org/release/source/ MAINTAINER= fernape@FreeBSD.org COMMENT= Software platform for handling a wide class of economic models LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/COPYING ONLY_FOR_ARCHS= amd64 i386 ARCH_amd64= 64 ARCH_i386= 32 PLIST_SUB= ARCH=${ARCH_${ARCH}} BUILD_DEPENDS= ${LOCALBASE}/include/boost/unordered_set.hpp:devel/boost-libs \ ctangle:devel/cweb LIB_DEPENDS= libumfpack.so:math/suitesparse \ libmatio.so:math/matio \ libhdf5.so:science/hdf5 \ libopenblas.so:math/openblas \ libfftw3_threads.so:math/fftw3 \ libfftw3f_threads.so:math/fftw3-float USES= fortran gmake localbase pkgconfig shebangfix tar:xz GNU_CONFIGURE= yes SHEBANG_FILES= matlab/modules/reporting/success.sh INFO= dynare OPTIONS_DEFINE= OCTAVE MATLAB OCTAVE_DESC= Enable compilation of MEX files for Octave MATLAB_DESC= Enable compilation of MEX files for MATLAB OPTIONS_DEFAULT= OCTAVE OPTIONS_SUB= yes MATLAB_CONFIGURE_ENABLE= matlab OCTAVE_CONFIGURE_ENABLE= octave OCTAVE_LIB_DEPENDS= liboctave.so:math/octave OCTAVE_USES= compiler:c++14-lang OCTAVE_VARS= CXXFLAGS=--std=c++14 # https://github.com/DynareTeam/dynare/issues/1599 post-configure: @${ECHO_MSG} "" @${ECHO_MSG} "" @${ECHO_MSG} "*******************************************************************************" @${ECHO_MSG} "Follow instructions at http://www.freebsd.org/doc/handbook/linuxemu-matlab.html" @${ECHO_MSG} "on how to install MATLAB on FreeBSD" @${ECHO_MSG} "*******************************************************************************" @${ECHO_MSG} "" @${ECHO_MSG} "" .include Index: head/math/flann/Makefile =================================================================== --- head/math/flann/Makefile (revision 489411) +++ head/math/flann/Makefile (revision 489412) @@ -1,30 +1,30 @@ # $FreeBSD$ PORTNAME= flann DISTVERSION= 1.9.1-19 DISTVERSIONSUFFIX= -gf3a17cd -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= math MAINTAINER= yuri@FreeBSD.org COMMENT= Library for fast nearest neighbor searches in high dimensional spaces LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/COPYING LIB_DEPENDS= libhdf5.so:science/hdf5 \ libsz.so:science/szip USES= cmake USE_GITHUB= yes GH_ACCOUNT= mariusmuja USE_LDCONFIG= yes PLIST_SUB= SHL3=${DISTVERSION:C/-.*//} SHL2=${DISTVERSION:R} CFLAGS_powerpc64= -mminimal-toc CMAKE_OFF= BUILD_PYTHON_BINDINGS BUILD_MATLAB_BINDINGS BUILD_EXAMPLES BUILD_TESTS BUILD_DOC \ USE_OPENMP # OpenMP search is broken in cmake: https://gitlab.kitware.com/cmake/cmake/issues/17474 .include Index: head/math/labplot/Makefile =================================================================== --- head/math/labplot/Makefile (revision 489411) +++ head/math/labplot/Makefile (revision 489412) @@ -1,54 +1,54 @@ # Created by: Kay Lehmann # $FreeBSD$ PORTNAME= labplot PORTVERSION= 2.5.0 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= math kde MASTER_SITES= KDE/stable/${PORTNAME}/${PORTVERSION} MAINTAINER= kde@FreeBSD.org COMMENT= Data plotting and function analysis tool for KDE LICENSE= GPLv2+ LICENSE_FILE= ${WRKSRC}/COPYING LIB_DEPENDS= libgsl.so:math/gsl USES= bison cmake desktop-file-utils kde:5 qt:5 shared-mime-info tar:xz USE_KDE= archive auth bookmarks codecs completion config configwidgets \ coreaddons crash ecm_build guiaddons i18n iconthemes itemviews \ jobwidgets kdelibs4support kio newstuff notifications parts \ service solid sonnet syntaxhighlighting textwidgets unitconversion \ widgetsaddons windowsystem xmlgui USE_QT= concurrent core dbus gui network printsupport serialport \ sql svg widgets xml \ buildtools_build qmake_build CMAKE_OFF= ENABLE_LIBCERF DATADIR= ${PREFIX}/share/labplot2 OPTIONS_DEFINE= CANTOR FITS FFTW3 HDF5 NETCDF OPTIONS_DEFAULT= ${OPTIONS_DEFINE} CANTOR_DESC= Build with Cantor support CANTOR_CMAKE_BOOL= ENABLE_CANTOR CANTOR_LIB_DEPENDS= libcantorlibs.so:math/cantor FITS_DESC= Flexible Image Transport System Data Format (FITS) Library FITS_CMAKE_BOOL= ENABLE_FITS FITS_LIB_DEPENDS= libcfitsio.so:astro/cfitsio FFTW3_DESC= Build with FFTW support FFTW3_CMAKE_BOOL= ENABLE_FFTW FFTW3_LIB_DEPENDS= libfftw3.so:math/fftw3 HDF5_DESC= Build with HDF5 support HDF5_CMAKE_BOOL= ENABLE_HDF5 HDF5_LIB_DEPENDS= libhdf5.so:science/hdf5 NETCDF_DESC= Build with NetCDF support NETCDF_CMAKE_BOOL= ENABLE_NETCDF NETCDF_LIB_DEPENDS= libnetcdf.so:science/netcdf post-patch: ${REINPLACE_CMD} -e 's|/usr/local|${LOCALBASE}|g' ${WRKSRC}/CMakeLists.txt .include Index: head/math/libmesh/Makefile =================================================================== --- head/math/libmesh/Makefile (revision 489411) +++ head/math/libmesh/Makefile (revision 489412) @@ -1,85 +1,85 @@ # Created by: Yuri Victorovich # $FreeBSD$ PORTNAME= libmesh DISTVERSIONPREFIX= v DISTVERSION= 1.3.1 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= math MAINTAINER= yuri@FreeBSD.org COMMENT= Numerical simulation of partial differential equations LICENSE= LGPL21 LICENSE_FILE= ${WRKSRC}/COPYING BROKEN_powerpc64= fails to link: libcontrib_opt.a: relocation truncated to fit: R_PPC64_GOT_TLSLD16 against .LANCHOR1 LIB_DEPENDS= libboost_system.so:devel/boost-libs USES= autoreconf eigen:3 gmake libtool GNU_CONFIGURE= yes USE_GITHUB= yes GH_ACCOUNT= libMesh CONFIGURE_ARGS= --disable-static \ --with-methods=opt \ --with-thread-model=pthread \ --datarootdir=${DATADIR} \ --enable-amr \ --disable-strict-lgpl \ --enable-tetgen \ --enable-triagle \ --with-boost=${LOCALBASE} \ --with-eigen-include=${LOCALBASE}/include/eigen3 \ --disable-netcdf --disable-netcdf-4 # https://github.com/libMesh/libmesh/issues/1542 MAKE_ARGS= LDFLAGS="-pthread -lexecinfo" USE_LDCONFIG= yes OPTIONS_DEFINE= GLPK HDF5 MPI EXAMPLES OPTIONS_DEFAULT= MPI GLPK_DESC= Glpk linear programming solver library GLPK_CONFIGURE_ENABLE= glpk GLPK_LIB_DEPENDS= libglpk.so:math/glpk HDF5_CONFIGURE_ENABLE= hdf5 HDF5_LIB_DEPENDS= libhdf5.so:science/hdf5 MPI_CONFIGURE_ENABLE= mpi FSCURVES_CONFIGURE_ENABLE= sfc EXAMPLES_CONFIGURE_ENABLE= examples EXAMPLES_VARS= PKGMESSAGE=pkg-message-examples SUB_FILES= pkg-message-examples PORTEXAMPLES= * post-extract: @${FIND} ${WRKSRC} -name "*.orig" -delete post-install: @${MKDIR} ${STAGEDIR}${DATADIR} @${MV} ${STAGEDIR}${PREFIX}/etc/libmesh/Make.common ${STAGEDIR}${DATADIR} @cd ${STAGEDIR}${PREFIX} && ${RM} -r \ etc/libmesh \ Make.common \ contrib \ libdata/pkgconfig/Make.common # https://github.com/libMesh/libmesh/issues/1539 @${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/libmesh_opt.so.0.0.0 @${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/libmetaphysicl.so.0.0.0 post-install-EXAMPLES-on: # https://github.com/libMesh/libmesh/issues/1541 @${MV} ${STAGEDIR}${PREFIX}/examples ${STAGEDIR}${EXAMPLESDIR} @${FIND} ${STAGEDIR}${EXAMPLESDIR} -name Makefile | ${XARGS} ${REINPLACE_CMD} -i '' -e ' \ s|LIBMESH_DIR ?= .*|LIBMESH_DIR ?= ${PREFIX}| ; \ s|$$(LIBMESH_DIR)/Make.common|${DATADIR}/Make.common| ; \ s|LIBMESH_DIR/examples|LIBMESH_DIR/share/examples/${PORTNAME}| ; \ s|$$(libmesh_LDFLAGS)|$$(libmesh_LDFLAGS) -pthread|' @${FIND} ${STAGEDIR}${EXAMPLESDIR} -name run.sh | ${XARGS} ${CHMOD} +x @${FIND} ${STAGEDIR}${EXAMPLESDIR} -name run.sh | ${XARGS} ${REINPLACE_CMD} -i '' -e ' \ s|#set -x|export LIBMESH_DIR=${PREFIX}| ; \ s|#!/bin/bash|#!${LOCALBASE}/bin/bash| ; \ s|LIBMESH_DIR/examples|LIBMESH_DIR/share/examples/${PORTNAME}| ; \ s|reference_elements|share/${PORTNAME}/reference_elements|' @${REINPLACE_CMD} -i '' -e 's|libmesh_LIBTOOL ?= /usr/local/contrib/bin/libtool|libmesh_LIBTOOL ?= libtool|' \ ${STAGEDIR}${DATADIR}/Make.common .include Index: head/math/mathgl/Makefile =================================================================== --- head/math/mathgl/Makefile (revision 489411) +++ head/math/mathgl/Makefile (revision 489412) @@ -1,74 +1,74 @@ # $FreeBSD$ PORTNAME= mathgl DISTVERSION= 2.4.2.1 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= math graphics MASTER_SITES= SF/${PORTNAME}/${PORTNAME}/${PORTNAME}%20${PORTVERSION:R} MAINTAINER= yuri@FreeBSD.org COMMENT= Library for high-quality scientific data visualization LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/COPYING LIB_DEPENDS= libgif.so:graphics/giflib \ libgsl.so:math/gsl \ libhdf5.so:science/hdf5 \ libhpdf.so:print/libharu \ libltdl.so:devel/libltdl \ libpng.so:graphics/png \ libsz.so:science/szip USES= cmake jpeg gettext-runtime python:2.7 USE_GL= gl glu glut USE_XORG= xi xmu USE_LDCONFIG= yes .for v in double gif glut gsl hdf5 jpeg ltdl mgl2 opengl pdf png zlib CMAKE_ARGS+= -Denable-${v}=ON .endfor .for v in doc-info doc-html lgpl mgltex CMAKE_ARGS+= -Denable-${v}=OFF .endfor OPTIONS_DEFINE= PYTHON MPI OPTIONS_GROUP= GRAPHICS OPTIONS_GROUP_GRAPHICS= QT5 FLTK WXGTK OPTIONS_RADIO= THREADS OPTIONS_RADIO_THREADS= PTHREADS OPENMP OPTIONS_DEFAULT= QT5 OPTIONS_SUB= yes GRAPHICS_DESC= Graphics support PTHREADS_DESC= Enable POSIX threads support (broken, fix pending release) OPENMP_DESC= Parallel processing support via OpenMP (broken, cmake bug) FLTK_DESC= Enable fltk widget PLIST_SUB= SHLIB_VER=7.5.0 PYTHON_CMAKE_BOOL= enable-python PYTHON_BUILD_DEPENDS= swig3.0:devel/swig30 \ ${PYNUMPY} PYTHON_RUN_DEPENDS= ${PYNUMPY} MPI_CMAKE_BOOL= enable-mpi MPI_LIB_DEPENDS= libmpi.so:net/openmpi QT5_CMAKE_BOOL= enable-qt5 QT5_USE= QT=core,gui,opengl,printsupport,widgets,buildtools_build,qmake_build QT5_USES= desktop-file-utils qt:5 shared-mime-info FLTK_CMAKE_BOOL= enable-fltk FLTK_LIB_DEPENDS= libfltk.so:x11-toolkits/fltk FLTK_USE= XORG=ice,sm,x11,xext WXGTK_CMAKE_BOOL= wx WXGTK_USE= WX=3.0+ PTHREADS_CMAKE_BOOL= enable-pthread OPENMP_CMAKE_BOOL= enable-openmp post-patch-FLTK-on: @${REINPLACE_CMD} -e 's|#include Index: head/math/matio/Makefile =================================================================== --- head/math/matio/Makefile (revision 489411) +++ head/math/matio/Makefile (revision 489412) @@ -1,30 +1,31 @@ # Created by: rfarmer@predatorlabs.net # $FreeBSD$ PORTNAME= matio PORTVERSION= 1.5.13 +PORTREVISION= 1 CATEGORIES= math MASTER_SITES= SF MAINTAINER= makc@FreeBSD.org COMMENT= Library for reading and writing Matlab MAT files LICENSE= BSD2CLAUSE GNU_CONFIGURE= yes USES= 7z libtool pathfix USE_LDCONFIG= yes INSTALL_TARGET= install-strip OPTIONS_DEFINE= HDF5 OPTIONS_DEFAULT= HDF5 HDF5_DESC= Support for MAT file version 7.3 HDF5_LIB_DEPENDS= libhdf5.so:science/hdf5 HDF5_CONFIGURE_ON= --enable-mat73=yes \ --with-hdf5=${LOCALBASE} post-extract: @${CHMOD} +x ${WRKSRC}/configure .include Index: head/math/moab/Makefile =================================================================== --- head/math/moab/Makefile (revision 489411) +++ head/math/moab/Makefile (revision 489412) @@ -1,37 +1,37 @@ # $FreeBSD$ PORTNAME= moab DISTVERSION= 5.0.0 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= math MASTER_SITES= https://bitbucket.org/${BB_ACCOUNT}/${BB_PROJECT}/get/${BB_COMMIT}.tar.gz?dummy=/ MAINTAINER= yuri@FreeBSD.org COMMENT= Component for representing and evaluating mesh data LICENSE= BSD2CLAUSE xLICENSE_FILE= ${WRKSRC}/LICENSE.txt LIB_DEPENDS= libhdf5.so:science/hdf5 \ libnetcdf.so:science/netcdf \ libopenblas.so:math/openblas USES= cmake:noninja eigen:3 fortran USE_LDCONFIG= yes CMAKE_ARGS= -DBLAS_LIBRARIES:STRING=${LOCALBASE}/lib/libopenblas.so -DLAPACK_LIBRARIES:STRING=${LOCALBASE}/lib/libopenblas.so BB_ACCOUNT= fathomteam BB_PROJECT= ${PORTNAME} BB_COMMIT= c4eed56fd6d2 WRKSRC= ${WRKDIR}/${BB_ACCOUNT}-${BB_PROJECT}-${BB_COMMIT} OPTIONS_DEFINE= MPI OPTIONS_DEFAULT= MPI OPTIONS_SUB= yes MPI_CMAKE_BOOL= ENABLE_MPI MPI_LIB_DEPENDS= libmpi.so:net/openmpi .include Index: head/math/octave/Makefile =================================================================== --- head/math/octave/Makefile (revision 489411) +++ head/math/octave/Makefile (revision 489412) @@ -1,124 +1,124 @@ # Created by: chuckr@FreeBSD.org # $FreeBSD$ PORTNAME= octave PORTVERSION= ${OCTAVE_VERSION} -PORTREVISION= 7 +PORTREVISION= 8 CATEGORIES= math java MASTER_SITES= GNU MAINTAINER= stephen@FreeBSD.org COMMENT= High-level interactive language for numerical computations LICENSE= GPLv3 BUILD_DEPENDS= gnuplot:math/gnuplot \ ${LOCALBASE}/bin/gperf:devel/gperf \ gsed:textproc/gsed \ ${LOCALBASE}/bin/makeinfo:print/texinfo RUN_DEPENDS= gnuplot:math/gnuplot \ gsed:textproc/gsed \ ${LOCALBASE}/bin/makeinfo:print/texinfo LIB_DEPENDS= libGraphicsMagick.so:graphics/GraphicsMagick \ libarpack.so:math/arpack-ng \ libcurl.so:ftp/curl \ libfftw3.so:math/fftw3 \ libfftw3f.so:math/fftw3-float \ libfltk.so:x11-toolkits/fltk \ libftgl.so:graphics/ftgl \ libhdf5.so:science/hdf5 \ libpcre.so:devel/pcre \ libqhull.so.5:math/qhull5 \ libqrupdate.so:math/qrupdate \ libumfpack.so:math/suitesparse \ libglpk.so:math/glpk \ libgl2ps.so:print/gl2ps \ libqscintilla2_qt5.so:devel/qscintilla2-qt5 \ libfontconfig.so:x11-fonts/fontconfig \ libfreetype.so:print/freetype2 \ libdrm.so:graphics/libdrm \ libOSMesa.so:graphics/libosmesa \ libsundials_arkode.so:math/sundials USES= charsetfix fortran gmake libtool perl5 pkgconfig qt:5 readline \ tar:xz compiler:c++14-lang \ desktop-file-utils gl iconv USE_LDCONFIG= ${PREFIX}/lib/${PORTNAME}/${PORTVERSION} USE_PERL5= build GNU_CONFIGURE= yes USE_JAVA= yes JAVA_VERSION= 1.7+ USE_QT= core gui help network opengl \ qmake_build buildtools_build linguist_build \ printsupport sql widgets USE_XORG= x11 xext xfixes xft \ xcursor xinerama xrender USE_GL= gl glu OCTAVE_VERSION= ${PORTVERSION} GNU_HOST= ${ARCH}-portbld-freebsd${OSREL} PLIST_SUB= OCTAVE_VERSION=${OCTAVE_VERSION} GNU_HOST=${GNU_HOST} CPPFLAGS+= -I${LOCALBASE}/include LDFLAGS+= -L${LOCALBASE}/lib CONFIGURE_ENV= GPERF="${LOCALBASE}/bin/gperf" \ JAVA_HOME=${JAVA_HOME} \ MAKEINFO=${LOCALBASE}/bin/makeinfo \ MKINFO=${LOCALBASE}/bin/makeinfo \ MOC_QTVER=${LOCALBASE}/bin/moc \ UIC_QTVER=${LOCALBASE}/bin/uic \ RCC_QTVER=${LOCALBASE}/bin/rcc \ ac_cv_type_max_align_t=yes \ ac_cv_path_SED=${LOCALBASE}/bin/gsed CONFIGURE_ARGS= --host=${GNU_HOST} \ --with-blas="-L${LOCALBASE}/lib ${BLASLIB}" \ --with-lapack="${LAPACKLIB}" \ --enable-shared \ --disable-jit \ --disable-openmp \ --with-qt=5 \ --with-osmesa INFO= octave liboctave OPTIONS_DEFINE= DOCS DOCS_CONFIGURE_ENABLE= docs OPTIONS_RADIO= BLAS OPTIONS_RADIO_BLAS= OPENBLAS NETLIB ATLAS OPTIONS_DEFAULT= OPENBLAS DOCS_USE= TEX=dvipsk:build,formats:build OPENBLAS_USES= blaslapack:openblas NETLIB_USES= blaslapack:netlib ATLAS_USES= blaslapack:atlas post-patch: ${REINPLACE_CMD} 's+"makeinfo"+"${LOCALBASE}/bin/makeinfo"+' ${WRKSRC}/libinterp/corefcn/help.cc ${REINPLACE_CMD} 's+lapack lapack_rs6k+${LAPACKLIB:C/-l//}+' ${WRKSRC}/configure ${REINPLACE_CMD} 's+-lumfpack+-lumfpack -lsuitesparseconfig -lamd -lcholmod -lcolamd ${LAPACKLIB}+' ${WRKSRC}/configure ${REINPLACE_CMD} 's+-lcholmod+-lumfpack -lsuitesparseconfig -lamd -lcholmod -lcolamd ${LAPACKLIB}+' ${WRKSRC}/configure ${REINPLACE_CMD} 's/"-qt$$qt_version"/"-qt=qt$$qt_version"/' ${WRKSRC}/configure post-install: (cd ${STAGEDIR}${DATADIR} && ${LN} -s ${PORTVERSION}/imagelib .) ${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/octave/${PORTVERSION}/liboctave.so.6.0.0 post-install-DOCS-on: @${MKDIR} ${STAGEDIR}${DOCSDIR} .for file in liboctave/liboctave.ps \ refcard/refcard-a4.ps refcard/refcard-legal.ps \ refcard/refcard-letter.ps interpreter/octave.ps ${INSTALL_DATA} ${WRKSRC}/doc/${file} ${STAGEDIR}${DOCSDIR} .endfor @${MKDIR} ${STAGEDIR}${PREFIX}/${INFO_PATH} .for file in interpreter/octave.info liboctave/liboctave.info ${INSTALL_DATA} ${WRKSRC}/doc/${file} ${STAGEDIR}${PREFIX}/${INFO_PATH} .endfor check regression-test: build @(cd ${WRKSRC} && ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} check) .include "Makefile.version" .include Index: head/math/pdal/Makefile =================================================================== --- head/math/pdal/Makefile (revision 489411) +++ head/math/pdal/Makefile (revision 489412) @@ -1,86 +1,86 @@ # Created by: bart # $FreeBSD$ PORTNAME= pdal DISTVERSION= 1.7.2 -PORTREVISION= 5 +PORTREVISION= 6 CATEGORIES= math databases graphics MAINTAINER= lbartoletti@tuxfamily.org COMMENT= Library for translating and manipulating point cloud data LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE.txt LIB_DEPENDS= libgdal.so:graphics/gdal \ libgeos.so:graphics/geos \ libboost_thread.so:devel/boost-libs \ libcurl.so:ftp/curl \ libgeotiff.so:graphics/libgeotiff \ libxml2.so:textproc/libxml2 \ liblaszip.so:archivers/laszip \ libjsoncpp.so:devel/jsoncpp USES= cmake compiler:c++11-lib pathfix pkgconfig USE_LDCONFIG= yes USE_GITHUB= yes GH_ACCOUNT= ${PORTNAME:tu} GH_PROJECT= ${GH_ACCOUNT} # Unhide std::to_string() to fix build with GCC (see ports/193528 for details). CXXFLAGS+= -D_GLIBCXX_USE_C99 CMAKE_ON= WITH_LASZIP #LASZIP is recommended OPTIONS_DEFINE= BASH \ ICEBRIDGE PGPOINTCLOUD SQLITE MBIO \ PYTHON TESTS OPTIONS_DEFAULT= PYTHON PGPOINTCLOUD SQLITE #Option without port #lazperf #Plugins with lib not in port: #RivLib, Matlab, MrSID, CPD, GeoWave, GreyHound, HexBin, NITF (nitro) OPTIONS_SUB= yes PGPOINTCLOUD_DESC= Enable Coherent PostgreSQL Point Cloud plugin PGPOINTCLOUD_CMAKE_ON= -DBUILD_PLUGIN_PGPOINTCLOUD:BOOL=TRUE PGPOINTCLOUD_USES= pgsql PGPOINTCLOUD_CMAKE_OFF= -DBUILD_PLUGIN_PGPOINTCLOUD:BOOL=FALSE SQLITE_DESC= Enable SQLite plugin SQLITE_CMAKE_ON= -DBUILD_PLUGIN_SQLITE:BOOL=TRUE SQLITE_USES= sqlite SQLITE_CMAKE_OFF= -DBUILD_PLUGIN_SQLITE:BOOL=FALSE PYTHON_DESC= Enable Python plugin PYTHON_CMAKE_ON= -DBUILD_PLUGIN_PYTHON:BOOL=TRUE PYTHON_USES= python PYTHON_BUILD_DEPENDS= ${PYNUMPY} PYTHON_RUN_DEPENDS= ${PYNUMPY} PYTHON_CMAKE_OFF= -DBUILD_PLUGIN_PYTHON:BOOL=FALSE TESTS_DESC= Enable Tests TESTS_CMAKE_ON= -DBUILD_PLUGIN_TESTS:BOOL=TRUE TESTS_CMAKE_OFF= DBUILD_PLUGIN_TESTS:BOOL=FALSE ICEBRIDGE_DESC= Enable Icebridge plugin ICEBRIDGE_LIB_DEPENDS= libhdf5.so:science/hdf5 \ libsz.so:science/szip ICEBRIDGE_CMAKE_ON= -DBUILD_PLUGIN_ICEBRIDGE:BOOL=TRUE ICEBRIDGE_CMAKE_OFF= -DBUILD_PLUGIN_ICEBRIDGE:BOOL=FALSE MBIO_DESC= Enable MBIO plugin MBIO_CMAKE_ON= -DBUILD_PLUGIN_MBIO:BOOL=TRUE MBIO_CMAKE_OFF= -DBUILD_PLUGIN_MBIO:BOOL=FALSE BASH_DESC= BASH completion BASH_CMAKE_ON= -DWITH_COMPLETION:BOOL=TRUE BASH_RUN_DEPENDS= bash:shells/bash BASH_CMAKE_OFF= -DWITH_COMPLETION:BOOL=FALSE post-install-BASH-on: ${MKDIR} ${STAGEDIR}${PREFIX}/share/bash-completion/completions ${INSTALL_DATA} ${WRKSRC}/scripts/bash-completion/pdal \ ${STAGEDIR}${PREFIX}/share/bash-completion/completions .include Index: head/math/scilab/Makefile =================================================================== --- head/math/scilab/Makefile (revision 489411) +++ head/math/scilab/Makefile (revision 489412) @@ -1,178 +1,178 @@ # Created by: js@jeannot.org # $FreeBSD$ PORTNAME= scilab PORTVERSION= 5.5.2 -PORTREVISION= 15 +PORTREVISION= 16 CATEGORIES= math cad java MASTER_SITES= https://www.scilab.org/download/${PORTVERSION}/ DISTFILES= ${DISTNAME}-src${EXTRACT_SUFX} LICENSE= GPLv2 BSD3CLAUSE LICENSE_COMB= dual LICENSE_FILE_GPLv2= ${WRKSRC}/COPYING LICENSE_FILE_BSD3CLAUSE= ${WRKSRC}/COPYING-BSD MAINTAINER= makc@FreeBSD.org COMMENT= Scientific software package for numerical computations # A partial dependencies list can be found at: # http://wiki.scilab.org/Dependencies_of_Scilab_5.X LIB_DEPENDS= libxml2.so:textproc/libxml2 \ libpcre.so:devel/pcre \ libcurl.so:ftp/curl \ libhdf5.so:science/hdf5 \ libarpack.so:math/arpack-ng \ libfftw3.so:math/fftw3 \ libmatio.so:math/matio \ libamd.so:math/suitesparse RUN_DEPENDS= xdg-open:devel/xdg-utils USES= cpe desktop-file-utils fortran gettext gl gmake gnome iconv \ libtool ncurses pathfix pkgconfig shared-mime-info USE_CXXSTD= gnu++98 USE_LOCALE= en_US.UTF-8 GNU_CONFIGURE= yes INSTALLS_ICONS= yes CPPFLAGS+= -I${LOCALBASE}/include LDFLAGS+= -L${LOCALBASE}/lib CONFIGURE_ARGS= --with-gfortran \ --without-emf \ -disable-static-system-lib CONFIGURE_ENV= BLAS_LIBS="${BLASLIB}" LAPACK_LIBS="${LAPACKLIB}" INSTALL_TARGET= install-strip TEST_TARGET= check # XXX: tests fail MAKE_JOBS_UNSAFE= yes PLIST_SUB= SHLIB_VER=${PORTVERSION} OPTIONS_DEFINE= GUI OCAML TK OPTIONS_RADIO= BLAS OPTIONS_RADIO_BLAS= ATLAS NETLIB OPENBLAS OPTIONS_DEFAULT= GUI NETLIB OCAML TK OPTIONS_SUB= yes ATLAS_USES= blaslapack:atlas NETLIB_USES= blaslapack:netlib OPENBLAS_USES= blaslapack:openblas GUI_DESC= Java-based Graphical User Interface OCAML_DESC= Scicos - dynamical system simulator (requires GUI) # Java dependencies: _GUI_DEPENDS+= ${JAVALIBDIR}/flexdock.jar:devel/flexdock \ ${JAVALIBDIR}/jogl2.jar:graphics/jogamp-jogl \ foprep:math/jeuclid \ ${JAVALIBDIR}/jhall.jar:java/javahelp \ ${JAVALIBDIR}/jrosetta-api.jar:java/jrosetta \ ${JAVALIBDIR}/commons-logging.jar:java/jakarta-commons-logging \ ${JAVALIBDIR}/jgraphx.jar:java/jgraphx \ ${JAVALIBDIR}/jlatexmath.jar:math/jlatexmath \ ${LOCALBASE}/share/java/ecj-4.5.jar:lang/gcc-ecj45 # Documentation, graphic export: _GUI_DEPENDS+= ${LOCALBASE}/share/java/fop/build/fop.jar:textproc/fop \ ${JAVALIBDIR}/jlatexmath-fop.jar:math/jlatexmath \ ${LOCALBASE}/share/java/batik/lib/batik-all.jar:graphics/batik \ ${JAVALIBDIR}/avalon-framework.jar:devel/avalon-framework \ ${JAVALIBDIR}/commons-io.jar:devel/jakarta-commons-io \ ${JAVALIBDIR}/xmlgraphics-commons.jar:graphics/xmlgraphics-commons # Code quality: _GUI_DEPENDS+= ${JAVALIBDIR}/commons-beanutils.jar:java/jakarta-commons-beanutils \ ${JAVALIBDIR}/antlr.jar:devel/antlr \ ${JAVALIBDIR}/junit4.jar:java/junit \ ${LOCALBASE}/bin/splint:devel/splint # Documentation building: _GUI_DEPENDS+= ${LOCALBASE}/share/xsl/docbook/javahelp/javahelp.xsl:textproc/docbook-xsl \ ${JAVALIBDIR}/saxon9he.jar:textproc/saxon-he \ ${JAVALIBDIR}/xml-apis-ext.jar:textproc/xml-commons \ xsltproc:textproc/libxslt # Other gui deps: _GUI_DEPENDS+= ${JAVALIBDIR}/looks.jar:devel/looks \ ${JAVALIBDIR}/skinlf.jar:x11-toolkits/skinlf # Can't use USE_ANT because it overrides do-build target GUI_BUILD_DEPENDS= ${_GUI_DEPENDS} \ ant:devel/apache-ant GUI_RUN_DEPENDS= ${_GUI_DEPENDS} GUI_ALL_TARGET= all doc GUI_USE= GL=gl JAVA=yes GUI_EXTRA_PATCHES= ${PATCHDIR}/extra-patch-bin-JAVA_HOME GUI_CONFIGURE_ON= --with-jdk=${JAVA_HOME} \ --with-docbook=${LOCALBASE}/share/xsl/docbook \ --enable-build-help GUI_CONFIGURE_OFF= --without-gui \ --without-javasci \ --without-xcos \ --disable-build-help OCAML_IMPLIES= GUI OCAML_CONFIGURE_WITH= modelica OCAML_BUILD_DEPENDS= ocaml:lang/ocaml OCAML_RUN_DEPENDS= ocaml:lang/ocaml TK_CONFIGURE_OFF= --without-tk TK_CONFIGURE_ON= --with-tk-library=${LOCALBASE}/lib \ --with-tk-include=${TK_INCLUDEDIR} \ --with-tcl-library=${LOCALBASE}/lib \ --with-tcl-include=${TCL_INCLUDEDIR} TK_USES= tk TK_USE= XORG=x11 TK_RUN_DEPENDS= ${LOCALBASE}/lib/bwidget/init.tcl:x11-toolkits/bwidget .if !exists(/usr/include/omp.h) CONFIGURE_ARGS+= --without-openmp .endif .include .if ${PORT_OPTIONS:MGUI} && ${JAVA_PORT_VERSION:M1.8.*} EXTRA_PATCHES+= ${PATCHDIR}/extra-patch-Makefile.in .endif post-patch: @# Configure fixes @${REINPLACE_CMD} -e 's|-ldl | |' ${WRKSRC}/configure @${REINPLACE_CMD} -e 's|-lumfpack|-lumfpack -lsuitesparseconfig -lamd -lcholmod -lcolamd $$LAPACK_LIBS $$BLAS_LIBS|g' ${WRKSRC}/configure @${REINPLACE_CMD} -e 's|TCLTK_LIBS=" -ldl"|TCLTK_LIBS=" "|' ${WRKSRC}/configure @${REINPLACE_CMD} -e 's|"x=" ==|"x" =|g' ${WRKSRC}/configure @${REINPLACE_CMD} -e 's|"x" ==|"x" =|g' ${WRKSRC}/configure @${REINPLACE_CMD} -e 's|sparc64-\*-netbsd\*|amd64-\*-freebsd\*|' ${WRKSRC}/configure @# Build fixes @${REINPLACE_CMD} -e 's|$$(CFLAGS:-O%=)|-I${LOCALBASE}/include -L${LOCALBASE}/lib|' ${WRKSRC}/modules/elementary_functions/Makefile.in @${REINPLACE_CMD} -e 's|freebsd|__FreeBSD__|g' ${WRKSRC}/modules/sparse/includes/spConfig.h @# malloc.h -> stdlib.h conversions @${GREP} -lr "" ${WRKSRC} \ | ${XARGS} ${REINPLACE_CMD} -e \ 's/[<"]malloc.h[>"]//' @# Run fixes @${REINPLACE_CMD} -e 's|%%JAVALIBDIR%%|${JAVALIBDIR}|' ${WRKSRC}/etc/librarypath.xml @${REINPLACE_CMD} -e 's|%%LOCALBASE%%|${LOCALBASE}|' ${WRKSRC}/etc/librarypath.xml @${REINPLACE_CMD} -e 's, gfortran, ${FC},' ${WRKSRC}/modules/dynamic_link/src/scripts/configure post-patch-GUI-on: @# Configure fixes @${REINPLACE_CMD} -e 's|/usr/lib/java|${JAVALIBDIR}|g' ${WRKSRC}/configure @${REINPLACE_CMD} -e 's|/usr/lib64/jni|${LOCALBASE}/lib/|g' ${WRKSRC}/configure @${REINPLACE_CMD} -e 's|$$jardir/batik-all.jar|${LOCALBASE}/share/java/batik/lib/batik-all.jar|g' ${WRKSRC}/configure @${REINPLACE_CMD} -e 's|$$jardir/fop.jar|${LOCALBASE}/share/java/fop/build/fop.jar|' ${WRKSRC}/configure @${REINPLACE_CMD} -e 's|$$jardir/jeuclid-core*.jar|${LOCALBASE}/share/java/jeuclid/repo/jeuclid-core*.jar|' ${WRKSRC}/configure @${REINPLACE_CMD} -e 's|jrosetta-API.jar|jrosetta-api.jar|' ${WRKSRC}/configure @# Run fixes @${REINPLACE_CMD} -e 's|%%JAVA_HOME%%|${JAVA_HOME}|' ${WRKSRC}/bin/scilab @${REINPLACE_CMD} -e 's|/usr/share/scilab|${DATADIR}|' ${WRKSRC}/desktop/scilab.desktop @${REINPLACE_CMD} -e 's|/usr/share/scilab-cli|${DATADIR}|' \ ${WRKSRC}/desktop/scilab-adv-cli.desktop ${WRKSRC}/desktop/scilab-cli.desktop pre-install: ${MKDIR} ${STAGEDIR}${DATADIR}/.atoms post-install: @# Remove empty dirs in DATADIR/modules - they will be removed by the @# toolbox uninstaller otherwise if 3rd party toolboxes are used @${FIND} ${STAGEDIR}${DATADIR}/modules -type d -empty -delete .include Index: head/science/ALPSCore/Makefile =================================================================== --- head/science/ALPSCore/Makefile (revision 489411) +++ head/science/ALPSCore/Makefile (revision 489412) @@ -1,52 +1,52 @@ # $FreeBSD$ PORTNAME= ALPSCore DISTVERSIONPREFIX= v DISTVERSION= 2.2.0 -PORTREVISION= 5 +PORTREVISION= 6 CATEGORIES= science MAINTAINER= mike.d.ft402@gmail.com COMMENT= Generic algorithms and utilities for condensed matter physics LICENSE= GPLv2 LICENSE_FILE= ${WRKSRC}/LICENSE.TXT LIB_DEPENDS= libboost_system.so:devel/boost-libs \ libhdf5.so:science/hdf5 \ libsz.so:science/szip USES= cmake eigen:3 USE_GITHUB= yes USE_LDCONFIG= yes TEST_TARGET= test # 2 to 3 tests fail: https://github.com/ALPSCore/ALPSCore/issues/388 CMAKE_ARGS+= -DTesting:BOOL=OFF # enable only for the 'test' target CMAKE_ARGS_TEST= -DTesting:BOOL=ON -DExtensiveTesting:BOOL=ON CXXFLAGS+= -DNDEBUG # see https://github.com/ALPSCore/ALPSCore/issues/389 LDFLAGS+= -lexecinfo # https://github.com/ALPSCore/ALPSCore/issues/390 OPTIONS_DEFINE= DOXYGEN DOCS OPENMPI2 OPTIONS_DEFAULT= OPENMPI2 OPENMPI2_DESC= Parallel processing support via Open MPI 2.x DOXYGEN_IMPLIES= DOCS DOXYGEN_CMAKE_BOOL= Documentation DOXYGEN_BUILD_DEPENDS= doxygen:devel/doxygen OPENMPI2_CMAKE_BOOL= ENABLE_MPI OPENMPI2_LIB_DEPENDS= libmpi.so:net/openmpi2 OPENMPI2_VARS= cc=${LOCALBASE}/mpi/openmpi2/bin/mpicc \ cxx=${LOCALBASE}/mpi/openmpi2/bin/mpicxx PORTDOCS= * post-install-DOXYGEN-on: @${RM} ${STAGEDIR}${DOCSDIR}/.tag pre-test: @cd ${CONFIGURE_WRKSRC} && \ ${SETENV} ${CONFIGURE_ENV} ${CMAKE_BIN} ${CMAKE_ARGS} ${CMAKE_ARGS_TEST} ${CMAKE_SOURCE_PATH} && \ ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} .include Index: head/science/InsightToolkit/Makefile =================================================================== --- head/science/InsightToolkit/Makefile (revision 489411) +++ head/science/InsightToolkit/Makefile (revision 489412) @@ -1,47 +1,47 @@ # Created by: bacon@smithers.neuro.mcw.edu # $FreeBSD$ PORTNAME= InsightToolkit PORTVERSION= 4.13.0 -PORTREVISION= 5 +PORTREVISION= 6 CATEGORIES= science biology MASTER_SITES= SF/itk/itk/${ITK_VER} MAINTAINER= woodsb02@FreeBSD.org COMMENT= Insight Toolkit LICENSE= APACHE20 BUILD_DEPENDS= googletest>=0:devel/googletest LIB_DEPENDS= libgdcmCommon.so:devel/gdcm \ libexpat.so:textproc/expat2 \ libfftw.so:math/fftw \ libhdf5.so:science/hdf5 \ libpng.so:graphics/png \ libsz.so:science/szip \ libtiff.so:graphics/tiff USES= cmake compiler:c11 jpeg CMAKE_ARGS+= -DBUILD_SHARED_LIBS:BOOL=ON \ -DITK_USE_KWSTYLE:BOOL=OFF \ -DITK_USE_SYSTEM_LIBRARIES:BOOL=ON \ -DITK_USE_SYSTEM_EXPAT:BOOL=ON \ -DITK_USE_SYSTEM_FFTW:BOOL=ON \ -DITK_USE_SYSTEM_GDCM:BOOL=ON \ -DITK_USE_SYSTEM_HDF5:BOOL=ON \ -DITK_USE_SYSTEM_JPEG:BOOL=ON \ -DITK_USE_SYSTEM_PNG:BOOL=ON \ -DITK_USE_SYSTEM_TIFF:BOOL=ON \ -DITK_USE_SYSTEM_ZLIB:BOOL=ON USE_LDCONFIG= ${PREFIX}/lib/InsightToolkit ITK_VER= ${PORTVERSION:R} PLIST_SUB+= ITK_VER=${ITK_VER} OPTIONS_DEFINE= EXAMPLES TESTING EXAMPLES_DESC= Build examples (very time consuming) TESTING_DESC= Build testing programs (very time consuming) EXAMPLES_CMAKE_ON= -DBUILD_EXAMPLES:BOOL=ON TESTING_CMAKE_ON= -DBUILD_TESTING:BOOL=ON .include Index: head/science/MOOSE-neural-simulator/Makefile =================================================================== --- head/science/MOOSE-neural-simulator/Makefile (revision 489411) +++ head/science/MOOSE-neural-simulator/Makefile (revision 489412) @@ -1,48 +1,48 @@ # Created by: Yuri Victorovich # $FreeBSD$ PORTNAME= MOOSE-neural-simulator DISTVERSION= 3.1.2 -PORTREVISION= 6 +PORTREVISION= 7 DISTVERSIONSUFFIX= -382-gc93d23a CATEGORIES= science biology MAINTAINER= yuri@FreeBSD.org COMMENT= Multiphysics Object Oriented Simulation Environment LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/LICENCE DEPRECATED= Qt4 has been EOL since december 2015 EXPIRATION_DATE= 2019-03-15 LIB_DEPENDS= libgsl.so:math/gsl \ libhdf5.so:science/hdf5 \ libsbml.so:biology/libsbml \ libsz.so:science/szip BUILD_DEPENDS= bash:shells/bash \ ${PYNUMPY} RUN_DEPENDS= ${PYNUMPY} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>=1.1.0:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}networkx>=1.0:math/py-networkx@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pygraphviz>=0:graphics/py-pygraphviz@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}suds-jurko>=0.4:net/py-suds-jurko@${PY_FLAVOR} USES= cmake fortran gettext-runtime pyqt:4 python:2.7 USE_GITHUB= yes GH_ACCOUNT= BhallaLab GH_PROJECT= moose USE_PYQT= core_run gui_run test_run OPTIONS_DEFINE= EXAMPLES PORTEXAMPLES= * post-patch: @${REINPLACE_CMD} -e 's|DESTINATION lib/moose/moose-examples|DESTINATION share/examples/${PORTNAME}|' ${WRKSRC}/CMakeLists.txt @${REINPLACE_CMD} -e 's|\.\./moose-examples/|${EXAMPLESDIR}/|' ${WRKSRC}/moose-gui/mgui.py post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/moose/_moose.so .include Index: head/science/avogadro2/Makefile =================================================================== --- head/science/avogadro2/Makefile (revision 489411) +++ head/science/avogadro2/Makefile (revision 489412) @@ -1,33 +1,33 @@ # $FreeBSD$ PORTNAME= avogadro2 DISTVERSION= 1.91.0 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org COMMENT= Chemical editor and visualization application LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= hdf5>0:science/hdf5 LIB_DEPENDS= libAvogadroCore.so:science/avogadrolibs \ libMoleQueueClient.so:misc/molequeue USES= cmake compiler:c++11-lang desktop-file-utils gl libarchive qt:5 USE_GITHUB= yes GH_ACCOUNT= OpenChemistry GH_PROJECT= avogadroapp USE_QT= core concurrent gui network widgets buildtools_build qmake_build USE_GL= gl glew glu USE_LDCONFIG= yes PLIST_FILES= bin/avogadro2 \ share/applications/avogadro2.desktop \ share/pixmaps/avogadro2.png post-install: @${RM} -r ${STAGEDIR}${PREFIX}/share/doc .include Index: head/science/avogadrolibs/Makefile =================================================================== --- head/science/avogadrolibs/Makefile (revision 489411) +++ head/science/avogadrolibs/Makefile (revision 489412) @@ -1,71 +1,71 @@ # $FreeBSD$ PORTNAME= avogadrolibs DISTVERSION= 1.92.0 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= science PATCH_SITES= https://github.com/${GH_ACCOUNT}/${PORTNAME}/commit/ PATCHFILES= cf9d82575796d5fcabb153bdebde26843d81d83e.patch:-p1 \ ea813f683cdd9865994c0ba94a24325e04b9f8fb.patch:-p1 \ MAINTAINER= yuri@FreeBSD.org COMMENT= Avogadro2 libraries for chemical editor and visualization applications LICENSE= GPLv2 LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${LOCALBASE}/include/mmtf.hpp:science/mmtf USES= cmake compiler:c++11-lang eigen:3,build,run # eigen needs to be 'run' because it is written into cmake files USE_GITHUB= yes GH_ACCOUNT= OpenChemistry USE_LDCONFIG= yes CMAKE_ON= BUILD_SHARED_LIBS OPTIONS_DEFINE= HDF5 LIBARCHIVE LIBMSYM MOLEQUEUE OPENGL QT5 SPGLIB VTK OPTIONS_DEFAULT= LIBARCHIVE LIBMSYM MOLEQUEUE OPENGL QT5 SPGLIB OPTIONS_SUB= yes HDF5_CMAKE_BOOL= USE_HDF5 HDF5_LIB_DEPENDS= libhdf5.so:science/hdf5 \ libsz.so:science/szip LIBARCHIVE_DESC= Enable optional Libarchive features LIBARCHIVE_CMAKE_BOOL= USE_LIBARCHIVE LIBARCHIVE_USES= libarchive LIBARCHIVE_IMPLIES= QT5 LIBMSYM_DESC= Enable optional features using libmsym LIBMSYM_CMAKE_BOOL= USE_LIBMSYM LIBMSYM_LIB_DEPENDS= libmsym.so:science/libmsym MOLEQUEUE_DESC= Enable the MoleQueue dependent functionality MOLEQUEUE_CMAKE_BOOL= USE_MOLEQUEUE MOLEQUEUE_LIB_DEPENDS= libMoleQueueClient.so:misc/molequeue MOLEQUEUE_IMPLIES= QT5 OPENGL_CMAKE_BOOL= USE_OPENGL OPENGL_USES= gl OPENGL_USE= GL=gl,glew,glu QT5_CMAKE_BOOL= USE_QT QT5_USES= qt:5 QT5_USE= QT=core,concurrent,gui,network,widgets,buildtools_build,qmake_build QT5_IMPLIES= OPENGL SPGLIB_DESC= Enable optional features using spglib SPGLIB_CMAKE_BOOL= USE_SPGLIB SPGLIB_LIB_DEPENDS= libsymspg.so:science/spglib VTK_DESC= Enable libraries that use VTK VTK_CMAKE_BOOL= USE_VTK VTK_LIB_DEPENDS= libvtksys-8.1.so.1:math/vtk8 VTK_IMPLIES= QT5 VTK_BROKEN= Needs https://github.com/psavery/genXrdPattern, etc post-install: @${RM} -r ${STAGEDIR}${PREFIX}/share/doc .include Index: head/science/cdo/Makefile =================================================================== --- head/science/cdo/Makefile (revision 489411) +++ head/science/cdo/Makefile (revision 489412) @@ -1,78 +1,78 @@ # Created by: Sunpoet Po-Chuan Hsieh # $FreeBSD$ PORTNAME= cdo PORTVERSION= 1.9.5 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= science MASTER_SITES= https://code.mpimet.mpg.de/attachments/download/18264/ \ LOCAL/sunpoet MAINTAINER= sunpoet@FreeBSD.org COMMENT= Climate Data Operators LICENSE= GPLv2 LICENSE_FILE= ${WRKSRC}/COPYING OPTIONS_DEFINE= CGRIBEX HDF5 JASPER NETCDF PROJ SZIP UDUNITS UUID OPTIONS_DEFAULT=CGRIBEX HDF5 JASPER NETCDF PROJ SZIP UDUNITS UUID OPTIONS_SUB= yes CGRIBEX_DESC= Use CGRIBEX library for GRIB1 files HDF5_IMPLIES= SZIP NETCDF_IMPLIES= HDF5 UUID_DESC= UUID support PORTSCOUT= site:https://code.zmaw.de/projects/cdo/files CONFIGURE_ARGS= --disable-data \ --disable-extra \ --disable-grib \ --disable-ieg \ --disable-openmp \ --disable-service \ --enable-cdi-lib \ --program-transform-name="" \ --with-zlib=/usr GNU_CONFIGURE= yes INSTALL_TARGET= install-strip MAKE_JOBS_UNSAFE= yes TEST_TARGET= check USES= compiler:c++11-lib gmake libtool localbase pathfix USE_CXXSTD= c++11 USE_LDCONFIG= yes CGRIBEX_CONFIGURE_WITH= cgribex CGRIBEX_LIB_DEPENDS= libcgribex.so:science/cgribex HDF5_CONFIGURE_WITH= hdf5 HDF5_LIB_DEPENDS= libhdf5.so:science/hdf5 JASPER_CONFIGURE_WITH= jasper JASPER_LIB_DEPENDS= libjasper.so:graphics/jasper NETCDF_CONFIGURE_WITH= netcdf NETCDF_LIB_DEPENDS= libnetcdf.so:science/netcdf PROJ_CONFIGURE_WITH= proj PROJ_LIB_DEPENDS= libproj.so:graphics/proj SZIP_CONFIGURE_WITH= szlib SZIP_LIB_DEPENDS= libsz.so:science/szip UDUNITS_CONFIGURE_WITH= udunits2 UDUNITS_LIB_DEPENDS= libudunits2.so:science/udunits UUID_CONFIGURE_OFF= ac_cv_func_uuid_create=no ac_cv_have_decl_uuid_create=no ac_cv_have_decl_uuid_generate=no ac_cv_lib_uuid_uuid_generate=no UUID_LIB_DEPENDS= libuuid.so:misc/e2fsprogs-libuuid .include .if ${ARCH} != "sparc64" CFLAGS+= -DPTHREAD_MUTEXATTR_CONDATTR .endif post-patch: @${REINPLACE_CMD} -e '/^SUBDIRS = / s| contrib||' ${WRKSRC}/Makefile.in @${REINPLACE_CMD} -e 's|$$(libdir)/\($$$$pkgconfigfile\)|${PREFIX}/libdata/\1|' ${WRKSRC}/libcdi/src/Makefile.in @${REINPLACE_CMD} -e 's|unsigned32 |uint32_t |' ${WRKSRC}/libcdi/src/cdilib.c ${WRKSRC}/libcdi/src/util.c post-install: ${INSTALL_DATA} ${WRKSRC}/libcdi/src/cdi.inc ${STAGEDIR}${PREFIX}/include/cdi.inc test-NETCDF-on: @cd ${WRKSRC}/ && ${SETENV} CDO_PATH=src/cdo src/cdotest .include Index: head/science/cgnslib/Makefile =================================================================== --- head/science/cgnslib/Makefile (revision 489411) +++ head/science/cgnslib/Makefile (revision 489412) @@ -1,56 +1,56 @@ # Created by: thierry@pompo.net # $FreeBSD$ PORTNAME= cgnslib DISTVERSIONPREFIX= v DISTVERSION= 3.3.1 -PORTREVISION= 1 +PORTREVISION= 2 PORTEPOCH= 1 CATEGORIES= science MAINTAINER= thierry@FreeBSD.org COMMENT= CFD General Notation System library code LICENSE= AS-IS LICENSE_NAME= AS-IS LICENSE_FILE= ${WRKSRC}/license.txt LICENSE_PERMS= dist-mirror dist-sell pkg-mirror pkg-sell auto-accept USES= cmake USE_GITHUB= yes GH_ACCOUNT= CGNS GH_PROJECT= CGNS USE_LDCONFIG= yes OPTIONS_DEFINE= HDF5 TESTS TOOLS OPTIONS_DEFAULT= HDF5 TESTS TOOLS OPTIONS_SUB= yes HDF5_DESC= Enable HDF5 interface TESTS_DESC= Enable test programs TOOLS_DESC= Build the CGNSTools package SZIP_DESC= SZIP support in HDF5 HDF5_LIB_DEPENDS= libhdf5.so:science/hdf5 libsz.so:science/szip HDF5_CMAKE_BOOL= CGNS_ENABLE_HDF5 HDF5_CMAKE_ON= -DHDF5_INCLUDE_PATH:PATH="${LOCALBASE}/include" TESTS_USES= fortran TESTS_CMAKE_BOOL= ENABLE_TESTS CGNS_ENABLE_FORTRAN TOOLS_USES= gl localbase tk TOOLS_USE= GL=gl,glu XORG=x11,xmu TOOLS_CMAKE_BOOL= CGNS_BUILD_CGNSTOOLS TOOLS_CMAKE_ON= -DTCL_INCLUDE_PATH:STRING="${TCL_INCLUDEDIR}" \ -DTK_INCLUDE_PATH:STRING="${TK_INCLUDEDIR}" do-test-TESTS-on: .for pg in cgwrite cgread test_partial @(cd ${BUILD_WRKSRC}/src/tests; ./${pg}) .endfor post-install: ${RLN} ${STAGEDIR}${PREFIX}/lib/libcgns.so.${DISTVERSION:R} \ ${STAGEDIR}${PREFIX}/lib/libcgns.so.${DISTVERSION:R:R} .include Index: head/science/chemps2/Makefile =================================================================== --- head/science/chemps2/Makefile (revision 489411) +++ head/science/chemps2/Makefile (revision 489412) @@ -1,29 +1,29 @@ # $FreeBSD$ PORTNAME= CheMPS2 DISTVERSIONPREFIX= v DISTVERSION= 1.8.9 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org COMMENT= Spin-adapted implementation of DMRG for ab initio quantum chemistry LICENSE= GPLv2 LICENSE_FILE= ${WRKSRC}/LICENSE LIB_DEPENDS= libhdf5.so:science/hdf5 \ libsz.so:science/szip USES= blaslapack:openblas cmake fortran USE_GITHUB= yes GH_ACCOUNT= SebWouters USE_LDCONFIG= yes CMAKE_ARGS+= -DSHARED_ONLY:BOOL=ON CMAKE_ARGS+= -DENABLE_TESTS:BOOL=OFF CMAKE_ARGS+= -DENABLE_XHOST:BOOL=OFF # shouldn't optimize the port in case of central build CMAKE_ARGS+= -DENABLE_OPENMP:BOOL=OFF # find_package(OpenMP) is broken since the merge into cmake: bug#223678 CMAKE_ARGS+= -DLAPACK_LIBRARIES="-lopenblas" # can't find it using find_package for some reason .include Index: head/science/chrono/Makefile =================================================================== --- head/science/chrono/Makefile (revision 489411) +++ head/science/chrono/Makefile (revision 489412) @@ -1,42 +1,42 @@ # $FreeBSD$ PORTNAME= chrono DISTVERSION= 2.0.0-9070 DISTVERSIONSUFFIX= -g57a828dc0 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= science devel MAINTAINER= yuri@FreeBSD.org COMMENT= C++ library for multi-physics simulation LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE PORTSCOUT= skipv:3.0.0 # their development continues under the branch 2.X. 3.0.0 should be ignored until they release a higher version BUILD_DEPENDS= openmpi>0:net/openmpi USES= cmake compiler:c++14-lang fortran USE_GITHUB= yes GH_ACCOUNT= project${PORTNAME} USE_LDCONFIG= yes OPTIONS_DEFINE= HDF5 DEMOS TESTS OPTIONS_SUB= yes HDF5_CMAKE_BOOL= ENABLE_HDF5 HDF5_LIB_DEPENDS= libhdf5.so:science/hdf5 DEMOS_DESC= Build and install demo programs DEMOS_CMAKE_BOOL= BUILD_DEMOS TESTS_DESC= Build and install unit test programs TESTS_CMAKE_BOOL= BUILD_TESTING post-extract: @${RM} ${WRKSRC}/data/opensim/Rajagopal2015.orig post-patch: @${FIND} ${WRKSRC} -name CMakeLists.txt -o -name "*.cmake*" | ${XARGS} ${REINPLACE_CMD} -i '' 's|lib64|lib|' .include Index: head/science/code_saturne/Makefile =================================================================== --- head/science/code_saturne/Makefile (revision 489411) +++ head/science/code_saturne/Makefile (revision 489412) @@ -1,97 +1,97 @@ # Created by: thierry@pompo.net # $FreeBSD$ PORTNAME= code_saturne PORTVERSION= 5.3.1 -PORTREVISION= 1 +PORTREVISION= 2 DISTVERSIONPREFIX= v CATEGORIES= science parallel MAINTAINER= thierry@FreeBSD.org COMMENT= EDF's general purpose Computational Fluid Dynamics (CFD) software LICENSE= GPLv2 LIB_DEPENDS= libsysinfo.so:devel/libsysinfo \ libcgns.so:science/cgnslib \ libhdf5.so:science/hdf5 \ libomp.so:devel/openmp \ libmedC.so:french/med RUN_DEPENDS= xmgrace:math/grace \ bash:shells/bash \ xterm:x11/xterm USE_GITHUB= yes GH_ACCOUNT= code-saturne USES= autoreconf bison fortran gettext gnome gmake iconv libtool \ pyqt:5 python:2.7 shebangfix USE_GNOME= libxml2 USE_PYQT= core gui sip widgets xml_build CPPFLAGS+= -I${LOCALBASE}/include -I${LOCALBASE}/include/libxml2 GNU_CONFIGURE= yes USE_LDCONFIG= yes BINARY_ALIAS= python=${PYTHON_CMD} OPTIONS_DEFINE= DOCS EXAMPLES ATLAS BATCH MPI OPTIONS_DEFAULT= BATCH MPI METIS OPTIONS_RADIO= METIS OPTIONS_RADIO_METIS= METIS PARMETIS ATLAS_USES= blaslapack:atlas ATLAS_CONFIGURE_ON= --with-blas=yes --with-blas-type=ATLAS BATCH_DESC= Use Torque to submit batches BATCH_RUN_DEPENDS= pbs-config:sysutils/torque MPI_LIB_DEPENDS= libmpi.so:net/mpich MPI_CONFIGURE_WITH= mpi METIS_LIB_DEPENDS= libmetis.so:math/metis METIS_CONFIGURE_ON= --with-metis-include="${LOCALBASE}/include" PARMETIS_LIB_DEPENDS= libparmetis.so:math/parmetis PARMETIS_CONFIGURE_ON= --with-metis-include="${LOCALBASE}/include/parmetis" \ --with-metis-lib="${LOCALBASE}/lib/parmetis" PARMETIS_CONFIGURE_ENV= LIBS=-lexecinfo TEST_TARGET= check .if defined(PACKAGE_BUILDING) TERM= vt100 # Force for pointyhat to override su .else TERM?= vt100 # Default value needed for tput in jail or tinderbox .endif .include .if ${ARCH} == "i386" # /wrkdirs/usr/ports/science/code_saturne/work/code_saturne-5.3.0/src/apps/.libs # /libsaturne.so: # undefined reference to `__atomic_compare_exchange' CONFIGURE_ARGS+= --disable-openmp .endif .if ${PORT_OPTIONS:MDOCS} USE_TEX= tex:build BUILD_DEPENDS+= fig2dev:print/transfig \ doxygen:devel/doxygen \ dot:graphics/graphviz \ sphinx-build:textproc/py-sphinx@${PY_FLAVOR} ALL_TARGET= all pdf DOCS= AUTHORS ChangeLog README .endif pre-configure: (cd ${WRKSRC} && ${LS} preprocessor/*/*.c src/*/*.c* | \ ${GREP} -v user_examples > po/POTFILES.in) ${FLEX} -o ${WRKSRC}/src/mei/mei_scanner.c ${WRKSRC}/src/mei/mei_scanner.l ${LOCALBASE}/bin/bison --defines=${WRKSRC}/src/mei/mei_parser.h \ -o ${WRKSRC}/src/mei/mei_parser.c ${WRKSRC}/src/mei/mei_parser.y post-install: .if ${PORT_OPTIONS:MDOCS} ${MKDIR} ${STAGEDIR}${DOCSDIR} ${INSTALL_DATA} ${DOCS:C|^|${WRKSRC}/|} ${STAGEDIR}${DOCSDIR} .endif .if ${PORT_OPTIONS:MEXAMPLES} ${MKDIR} ${STAGEDIR}${EXAMPLESDIR} cd ${WRKSRC}/examples && ${COPYTREE_SHARE} \* ${STAGEDIR}${EXAMPLESDIR} .endif .include Index: head/science/dft_tools/Makefile =================================================================== --- head/science/dft_tools/Makefile (revision 489411) +++ head/science/dft_tools/Makefile (revision 489412) @@ -1,40 +1,40 @@ # $FreeBSD$ PORTNAME= dft_tools DISTVERSION= 1.5 -PORTREVISION= 5 +PORTREVISION= 6 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org COMMENT= Interface to DFT codes in TRIQS LICENSE= GPLv3 BROKEN= wrong LIB_DEPENDS BUILD_DEPENDS= boost-libs>=1.53:devel/boost-libs \ googletest>0:devel/googletest # not needed: https://github.com/TRIQS/dft_tools/issues/95 LIB_DEPENDS= libcpp2py.so:devel/cpp2py \ libfftw3.so:math/fftw3 \ libgmpxx.so:math/gmp \ libhdf5.so:science/hdf5 \ libmpi.so:net/openmpi \ libopenblas.so:math/openblas \ libsz.so:science/szip \ libtriqs.so:science/triqs USES= cmake:noninja fortran gettext-runtime python:-2.7 USE_GITHUB= yes GH_ACCOUNT= TRIQS # Use the same compiler as science/triqs LLVM_VER= 60 BUILD_DEPENDS+= clang${LLVM_VER}:devel/llvm${LLVM_VER} CPP= clang-cpp${LLVM_VER} CC= clang${LLVM_VER} CXX= clang++${LLVM_VER} post-install: @cd ${STAGEDIR}${PREFIX} && ${REINPLACE_CMD} -i '' -e 's|#!/bin/bash|#!/bin/sh|' bin/plovasp bin/vasp_dmft .include Index: head/science/erkale/Makefile =================================================================== --- head/science/erkale/Makefile (revision 489411) +++ head/science/erkale/Makefile (revision 489412) @@ -1,76 +1,76 @@ # $FreeBSD$ PORTNAME= erkale DISTVERSION= g20181121 -PORTREVISION= 3 +PORTREVISION= 4 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org COMMENT= Quantum chemistry program to solve the electronic structure of atoms LICENSE= GPLv2 LICENSE_FILE= ${WRKSRC}/COPYING BROKEN_i386= liberkale_omp.so.0.1.0: undefined reference to `__atomic_compare_exchange' BUILD_DEPENDS= armadillo>0:math/armadillo LIB_DEPENDS= libderiv.so:science/libint \ libgsl.so:math/gsl \ libhdf5.so:science/hdf5 \ libint.so:science/libint \ libopenblas.so:math/openblas \ libsz.so:science/szip \ libxc.so:science/libxc FLAVORS= serial parallel FLAVOR?= ${FLAVORS:[1]} serial_PKGNAMESUFFIX= -serial USES= cmake:noninja fortran pkgconfig USE_GITHUB= yes GH_ACCOUNT= susilehtola GH_TAGNAME= 0927d8c USE_LDCONFIG= yes TEST_TARGET= test CMAKE_ON= BUILD_SHARED_LIBS PLIST_SUB= SUFFIX="${SUFFIX}" .if ${FLAVOR} == serial CMAKE_OFF= USE_OPENMP .else # parallel CMAKE_ON+= USE_OPENMP LIB_DEPENDS+= libomp.so:devel/openmp SUFFIX= _omp .endif OPTIONS_SINGLE= LINALG OPTIONS_SINGLE_LINALG= NETLIB OPENBLAS OPTIONS_DEFAULT= NETLIB LINALG_DESC= Linear algebra library NETLIB_USES= blaslapack:netlib NETLIB_CMAKE_ON= -DLAPACK_LIBRARIES:STRING=-llapack -DBLAS_LIBRARIES:STRING=-lblas NETLIB_LDFLAGS= ${LOCALBASE}/lib/libcblas.so ${LOCALBASE}/lib/liblapack.so ${LOCALBASE}/lib/libblas.so NETLIB_LIB_DEPENDS= libcblas.so:math/cblas OPENBLAS_USES= blaslapack:openblas OPENBLAS_CMAKE_ON= -DLAPACK_LIBRARIES:STRING=-lopenblas -DBLAS_LIBRARIES:STRING=-lopenblasp xOPENBLAS_BROKEN= hits the number of threads limit: https://github.com/xianyi/OpenBLAS/issues/1882 # use clang from ports because cmake can't find OpenMP with base clang, see https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=223678 # have the same compiler for both serial and parallel flavors so that performance numbers can be compared BUILD_DEPENDS+= clang${LLVM_DEFAULT}:devel/llvm${LLVM_DEFAULT} CPP= clang-cpp${LLVM_DEFAULT} CC= clang${LLVM_DEFAULT} CXX= clang++${LLVM_DEFAULT} .if ${FLAVOR} == parallel post-install: @${MV} ${STAGEDIR}${PREFIX}/include/erkale ${STAGEDIR}${PREFIX}/include/erkale${SUFFIX} @${MV} ${STAGEDIR}${PREFIX}/bin/erkale_bastool ${STAGEDIR}${PREFIX}/bin/erkale_bastool${SUFFIX} .endif .include Index: head/science/fleur/Makefile =================================================================== --- head/science/fleur/Makefile (revision 489411) +++ head/science/fleur/Makefile (revision 489412) @@ -1,63 +1,63 @@ # $FreeBSD$ PORTNAME= fleur DISTVERSION= 0.27-3 # Release 3 of Version 0.27 -PORTREVISION= 4 +PORTREVISION= 5 CATEGORIES= science MASTER_SITES= http://www.flapw.de/pm/uploads/FLEUR/ DISTNAME= fleurMaXR${DISTVERSION:C/.*-//} MAINTAINER= yuri@FreeBSD.org COMMENT= FLAPW code for atomic computations in quantum chemistry and physics LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE LIB_DEPENDS= libopenblas.so:math/openblas USES= cmake:noninja fortran gnome localbase:ldflags tar:tgz USE_GNOME= libxml2 FFLAGS= -I${LOCALBASE}/include WRKSRC= ${WRKDIR}/${PORTNAME} OPTIONS_DEFINE= HDF5 MPI SCALAPACK ELPA WANNIER OPTIONS_DEFAULT= MPI SCALAPACK ELPA WANNIER HDF5_CONFIGURE_ENV= FLEUR_USE_HDF5=1 HDF5_ROOT=${LOCALBASE}/lib HDF5_CONFIGURE_ENV_OFF= FLEUR_USE_HDF5=0 HDF5_CMAKE_ARGS= -DHDF5_INCLUDE_DIRS=${LOCALBASE}/include HDF5_LDFLAGS= -lhdf5 HDF5_LIB_DEPENDS= libhdf5.so:science/hdf5 HDF5_BROKEN= Missing hdf5.mod in hdf5 MPI_CONFIGURE_ENV= FLEUR_USE_MPI=1 MPI_CONFIGURE_ENV_OFF= FLEUR_USE_MPI=0 MPI_LDFLAGS= -lmpich -lmpifort MPI_LIB_DEPENDS= libmpich.so:net/mpich MPI_PLIST_FILES= bin/fleur_MPI SCALAPACK_DESC= Use the ScaLAPACK Scalable LAPACK library SCALAPACK_CMAKE_BOOL= FREEBSD_USE_SCALAPACK SCALAPACK_LDFLAGS= -lscalapack SCALAPACK_LIB_DEPENDS= libscalapack.so:math/scalapack SCALAPACK_IMPLIES= MPI ELPA_DESC= Use libelpa, Eigenvalue SoLver for Petaflop Applications ELPA_CMAKE_BOOL= FREEBSD_USE_ELPA ELPA_VARS= FFLAGS+=-I${LOCALBASE}/include/elpa-2018.05.001/modules ELPA_LDFLAGS= -lelpa ELPA_LIB_DEPENDS= libelpa.so:math/elpa ELPA_IMPLIES= MPI WANNIER_DESC= Use Wannier library WANNIER_CONFIGURE_ENV= FLEUR_USE_WANNIER=1 WANNIER_CONFIGURE_ENV_OFF= FLEUR_USE_WANNIER=0 WANNIER_LDFLAGS= -lwannier WANNIER_LIB_DEPENDS= libwannier.so:science/wannier90 PLIST_FILES= bin/fleur \ bin/inpgen .include Index: head/science/gnudatalanguage/Makefile =================================================================== --- head/science/gnudatalanguage/Makefile (revision 489411) +++ head/science/gnudatalanguage/Makefile (revision 489412) @@ -1,154 +1,154 @@ # Created by: thierry@pompo.net # $FreeBSD$ PORTNAME= gnudatalanguage PORTVERSION= 0.9.9 -PORTREVISION= 2 +PORTREVISION= 3 DISTVERSIONPREFIX= v CATEGORIES= science lang .if defined(BUILD_PYTHON_MODULE) PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} .endif MAINTAINER= thierry@FreeBSD.org COMMENT?= GDL, a free IDL compatible incremental compiler LICENSE= GPLv2 LIB_DEPENDS+= libgeotiff.so:graphics/libgeotiff\ libplplot.so:math/plplot \ libtiff.so:graphics/tiff \ libpng.so:graphics/png \ libsz.so:science/szip \ libps.so:print/pslib \ libgsl.so:math/gsl USE_GITHUB= yes GH_PROJECT= gdl USES= cmake compiler:c++11-lang fortran ncurses pkgconfig readline tar:tgz USE_WX= 3.0+ USE_XORG= x11 sm ice xext # On FreeBSD < 11 libc++ lacks support for sized delete operators. # GCC dropped the builtin version of these operators in 6+ by # defaulting to gnu++14. Force c++11 instead. # For a more detailed discussion see: # https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=219484 USE_CXXSTD= gnu++11 # Disable ncurses and readline from ports # Disable ImageMagick (does'nt work with plplot because dynamic drivers # are enabled by default) # TODO: add a slave port for mpich # TODO: create a port for Cmsvlib http://cow.physics.wisc.edu/~craigm/idl/down/cmsvlib.tar.gz # TODO: create a port for Astron http://idlastro.gsfc.nasa.gov/ftp/astron.tar.gz # TODO: create a port for TexToIdl http://physics.mnstate.edu/mcraig/textoidl/textoidl-2-1-2.tar CMAKE_ARGS= -DREADLINEDIR:STRING="/usr" \ -DOPENMP:BOOL=NO \ -DNCURSESDIR:STRING="/usr" \ -DMAGICK:BOOL=OFF CPPFLAGS+= ${CFLAGS} -fno-inline -DNPY_NO_DEPRECATED_API -DNPY_1_7_API_VERSION CXXFLAGS+= -std=gnu++11 LDFLAGS+= -lpthread -L${LOCALBASE}/lib SLAVEDIRS= science/py-gnudatalanguage OPTIONS_DEFINE= EIGEN EXAMPLES FFTW GLPK GRAPHICSMAGICK GRIB HDF5 LIBPROJ4 MPI NETCDF PYTHON UDUNITS OPTIONS_DEFAULT=EIGEN FFTW GLPK GRAPHICSMAGICK GRIB HDF5 LIBPROJ4 NETCDF PYTHON UDUNITS EIGEN_DESC= Eigen3 support (boost performance) EIGEN_USES= eigen:3 EIGEN_CMAKE_ON= -DEIGEN3:BOOL=YES EIGEN_CMAKE_OFF= -DEIGEN3:BOOL=NO FFTW_LIB_DEPENDS= libfftw3.so:math/fftw3 \ libfftw3f.so:math/fftw3-float FFTW_CMAKE_ON= -DFFTW:BOOL=YES FFTW_CMAKE_OFF= -DFFTW:BOOL=NO GLPK_DESC= Support GLPK for Simplex (Linear programming) GLPK_LIB_DEPENDS= libglpk.so:math/glpk GLPK_CMAKE_ON= -DGLPK=ON:BOOL=YES GLPK_CMAKE_OFF= -DGLPK=OFF:BOOL=NO GRAPHICSMAGICK_DESC= Support GraphicsMagick GRAPHICSMAGICK_LIB_DEPENDS= libGraphicsMagick.so:graphics/GraphicsMagick GRAPHICSMAGICK_CMAKE_ON= -DGRAPHICSMAGICK:BOOL=YES GRAPHICSMAGICK_CMAKE_OFF= -DGRAPHICSMAGICK:BOOL=NO GRIB_DESC= Support GRIB messages GRIB_LIB_DEPENDS= libgrib_api.so:science/grib_api GRIB_CMAKE_ON= -DGRIB:BOOL=YES GRIB_CMAKE_OFF= -DGRIB:BOOL=NO HDF5_LIB_DEPENDS= libhdf5.so:science/hdf5 HDF5_CMAKE_ON= -DHDF5:BOOL=YES HDF5_CMAKE_OFF= -DHDF5:BOOL=NO -DHDF:BOOL=NO LIBPROJ4_DESC= Support cartographic processes LIBPROJ4_LIB_DEPENDS= libproj.so:graphics/proj LIBPROJ4_CMAKE_ON= -DLIBPROJ4:BOOL=YES LIBPROJ4_CMAKE_OFF= -DLIBPROJ4:BOOL=NO MPI_LIB_DEPENDS= libmpich.so:net/mpich MPI_CMAKE_ON= -DMPICH:BOOL=ON MPI_CMAKE_OFF= -DMPICH:BOOL=OFF NETCDF_LIB_DEPENDS= libnetcdf.so:science/netcdf NETCDF_CMAKE_ON= -DNETCDF:BOOL=YES -DHDF:BOOL=NO NETCDF_CMAKE_OFF= -DNETCDF:BOOL=NO PYTHON_USES= python:2.7 PYTHON_BUILD_DEPENDS= ${PYNUMPY} PYTHON_RUN_DEPENDS= ${PYNUMPY} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} PYTHON_CMAKE_ON= -DPYTHON:BOOL=YES -DPYTHONVERSION:STRING="${PYTHON_VER}" PYTHON_CMAKE_OFF= -DPYTHON:BOOL=NO # QHULL IS NOT NEEDED YET! #QHULL_DESC= Enable Triangulate and Qhull support #QHULL_LIB_DEPENDS= libqhull.so:math/qhull #QHULL_CMAKE_ON= -DQHULL:BOOL=YES #QHULL_CMAKE_OFF= -DQHULL:BOOL=NO UDUNITS_LIB_DEPENDS= libudunits2.so:science/udunits UDUNITS_CMAKE_ON= -DUDUNITS:BOOL=YES UDUNITS_CMAKE_OFF= -DUDUNITS:BOOL=NO .if defined(BUILD_PYTHON_MODULE) CATEGORIES+= python CMAKE_ARGS+= -DPYTHON_MODULE:BOOL=YES PLIST= ${.CURDIR}/pkg-plist.pymod .else CMAKE_ARGS+= -DPYTHON_MODULE:BOOL=NO .endif .if defined(BUILD_PYTHON_MODULE) do-install: ${MKDIR} ${STAGEDIR}${PYTHON_SITELIBDIR} ${INSTALL_DATA} ${INSTALL_WRKSRC}/src/GDL.so ${STAGEDIR}${PYTHON_SITELIBDIR}/ .endif .if !defined(BUILD_PYTHON_MODULE) post-install: ${MKDIR} ${STAGEDIR}${EXAMPLESDIR}/testsuite (cd ${WRKSRC}/testsuite && ${COPYTREE_SHARE} \* ${STAGEDIR}${EXAMPLESDIR}/testsuite/) .endif .if defined(MAINTAINER_MODE) regression-test: install . if defined(BUILD_PYTHON_MODULE) @${ECHO_CMD} 'import GDL' > ${WRKDIR}/testgdl.py @${ECHO_CMD} 'print GDL.function("sin",(1,))' >> ${WRKDIR}/testgdl.py ${PYTHON_CMD} ${WRKDIR}/testgdl.py . else @${ECHO_CMD} ".RUN ${EXAMPLESDIR}/testsuite/test_suite.pro" \ > ${WRKDIR}/testgdl @${ECHO_CMD} "exit" >> ${WRKDIR}/testgdl ${PREFIX}/bin/gdl < ${WRKDIR}/testgdl . endif .endif .include Index: head/science/h5utils/Makefile =================================================================== --- head/science/h5utils/Makefile (revision 489411) +++ head/science/h5utils/Makefile (revision 489412) @@ -1,41 +1,41 @@ # Created by: Klaus Aehlig # $FreeBSD$ PORTNAME= h5utils DISTVERSION= 1.13.1 -PORTREVISION= 3 +PORTREVISION= 4 CATEGORIES= science MAINTAINER= aehlig@linta.de COMMENT= Set of utilities for visualization and conversion of HDF5 format LICENSE= MIT GPLv2 LICENSE_COMB= multi LICENSE_FILE= ${WRKSRC}/COPYING BUILD_DEPENDS= gawk:lang/gawk LIB_DEPENDS= libhdf5.so:science/hdf5 \ libpng.so:graphics/png \ libmatheval.so:devel/libmatheval USES= autoreconf compiler:c++11-lang GNU_CONFIGURE= yes USE_GITHUB= yes GH_ACCOUNT= stevengj CFLAGS+= -L${LOCALBASE}/lib -I${LOCALBASE}/include -lpthread CXXFLAGS+= -std=c++11 OPTIONS_DEFINE= OCTAVE OPTIONS_SUB= yes OCTAVE_DESC= With Octave support OCTAVE_CONFIGURE_WITH= octave OCTAVE_BUILD_DEPENDS= ${LOCALBASE}/include/octave-${OCTAVE_VERSION}/octave/octave.h:math/octave OCTAVE_VARS= PLIST_SUB+="OCTAVE_VERSION=${OCTAVE_VERSION} CONFIGURE_TARGET=${CONFIGURE_TARGET}" post-install-OCTAVE-on: @${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/octave/${OCTAVE_VERSION}/site/oct/${CONFIGURE_TARGET}/h5read.oct .include "../../math/octave/Makefile.version" .include Index: head/science/h5z-zfp/Makefile =================================================================== --- head/science/h5z-zfp/Makefile (revision 489411) +++ head/science/h5z-zfp/Makefile (revision 489412) @@ -1,38 +1,39 @@ # $FreeBSD$ PORTNAME= h5z-zfp DISTVERSIONPREFIX= v DISTVERSION= 0.9.0 +PORTREVISION= 1 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org COMMENT= Registered ZFP compression plugin for HDF5 LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= bash:shells/bash LIB_DEPENDS= libhdf5.so:science/hdf5 \ libzfp.so:devel/zfp USES= gmake localbase USE_GITHUB= yes GH_ACCOUNT= LLNL GH_PROJECT= ${PORTNAME:tu} USE_LDCONFIG= yes MAKE_ARGS= SHELL=${LOCALBASE}/bin/bash \ HDF5_HOME=${STAGEDIR}${LOCALBASE} HDF5_LIB=${LOCALBASE}/lib \ ZFP_HOME=${STAGEDIR}${LOCALBASE} ZFP_LIB=${LOCALBASE}/lib \ PREPATH=-Wl,-rpath= SOEXT=so SHFLAG=-shared CFLAGS+= -fPIC PLIST_FILES= include/H5Zzfp.h \ include/H5Zzfp_lib.h \ include/H5Zzfp_plugin.h \ include/H5Zzfp_props.h \ lib/libh5zzfp.so \ plugin/libh5zzfp.so .include Index: head/science/hdf5/files/patch-src_H5detect.c =================================================================== --- head/science/hdf5/files/patch-src_H5detect.c (revision 489411) +++ head/science/hdf5/files/patch-src_H5detect.c (nonexistent) @@ -1,112 +0,0 @@ ---- src/H5detect.c.orig 2018-12-12 22:50:50 UTC -+++ src/H5detect.c -@@ -1360,8 +1360,8 @@ bit.\n"; - * - *------------------------------------------------------------------------- - */ --static void --detect_C89_integers(void) HDF_NO_UBSAN -+static void HDF_NO_UBSAN -+detect_C89_integers(void) - { - DETECT_BYTE(signed char, SCHAR, d_g[nd_g]); nd_g++; - DETECT_BYTE(unsigned char, UCHAR, d_g[nd_g]); nd_g++; -@@ -1388,8 +1388,8 @@ detect_C89_integers(void) HDF_NO_UBSAN - * - *------------------------------------------------------------------------- - */ --static void --detect_C89_floats(void) HDF_NO_UBSAN -+static void HDF_NO_UBSAN -+detect_C89_floats(void) - { - DETECT_F(float, FLOAT, d_g[nd_g]); nd_g++; - DETECT_F(double, DOUBLE, d_g[nd_g]); nd_g++; -@@ -1410,8 +1410,8 @@ detect_C89_floats(void) HDF_NO_UBSAN - * - *------------------------------------------------------------------------- - */ --static void --detect_C99_integers8(void) HDF_NO_UBSAN -+static void HDF_NO_UBSAN -+detect_C99_integers8(void) - { - #if H5_SIZEOF_INT8_T>0 - #if H5_SIZEOF_INT8_T==1 -@@ -1472,8 +1472,8 @@ detect_C99_integers8(void) HDF_NO_UBSAN - * - *------------------------------------------------------------------------- - */ --static void --detect_C99_integers16(void) HDF_NO_UBSAN -+static void HDF_NO_UBSAN -+detect_C99_integers16(void) - { - #if H5_SIZEOF_INT16_T>0 - DETECT_I(int16_t, INT16, d_g[nd_g]); nd_g++; -@@ -1510,8 +1510,8 @@ detect_C99_integers16(void) HDF_NO_UBSAN - * - *------------------------------------------------------------------------- - */ --static void --detect_C99_integers32(void) HDF_NO_UBSAN -+static void HDF_NO_UBSAN -+detect_C99_integers32(void) - { - #if H5_SIZEOF_INT32_T>0 - DETECT_I(int32_t, INT32, d_g[nd_g]); nd_g++; -@@ -1548,8 +1548,8 @@ detect_C99_integers32(void) HDF_NO_UBSAN - * - *------------------------------------------------------------------------- - */ --static void --detect_C99_integers64(void) HDF_NO_UBSAN -+static void HDF_NO_UBSAN -+detect_C99_integers64(void) - { - #if H5_SIZEOF_INT64_T>0 - DETECT_I(int64_t, INT64, d_g[nd_g]); nd_g++; -@@ -1599,8 +1599,8 @@ detect_C99_integers64(void) HDF_NO_UBSAN - * - *------------------------------------------------------------------------- - */ --static void --detect_C99_integers(void) HDF_NO_UBSAN -+static void HDF_NO_UBSAN -+detect_C99_integers(void) - { - /* break it down to more subroutines so that each module subroutine */ - /* is smaller and takes less time to compile with optimization on. */ -@@ -1625,8 +1625,8 @@ detect_C99_integers(void) HDF_NO_UBSAN - * - *------------------------------------------------------------------------- - */ --static void --detect_C99_floats(void) HDF_NO_UBSAN -+static void HDF_NO_UBSAN -+detect_C99_floats(void) - { - #if H5_SIZEOF_DOUBLE == H5_SIZEOF_LONG_DOUBLE - /* -@@ -1656,8 +1656,8 @@ detect_C99_floats(void) HDF_NO_UBSAN - * - *------------------------------------------------------------------------- - */ --static void --detect_alignments(void) HDF_NO_UBSAN -+static void HDF_NO_UBSAN -+detect_alignments(void) - { - /* Detect structure alignment for pointers, hvl_t, hobj_ref_t, hdset_reg_ref_t */ - DETECT_M(void *, POINTER, m_g[na_g]); na_g++; -@@ -1744,8 +1744,8 @@ static int verify_signal_handlers(int signum, void (*h - * - *------------------------------------------------------------------------- - */ --int --main(void) HDF_NO_UBSAN -+int HDF_NO_UBSAN -+main(void) - { - - #if defined(H5_HAVE_SETSYSINFO) && defined(SSI_NVPAIRS) Property changes on: head/science/hdf5/files/patch-src_H5detect.c ___________________________________________________________________ Deleted: fbsd:nokeywords ## -1 +0,0 ## -yes \ No newline at end of property Deleted: svn:eol-style ## -1 +0,0 ## -native \ No newline at end of property Deleted: svn:mime-type ## -1 +0,0 ## -text/plain \ No newline at end of property Index: head/science/hdf5/Makefile =================================================================== --- head/science/hdf5/Makefile (revision 489411) +++ head/science/hdf5/Makefile (revision 489412) @@ -1,54 +1,53 @@ # Created by: ijliao # $FreeBSD$ PORTNAME= hdf5 -PORTVERSION= 1.10.2 -PORTREVISION= 1 +PORTVERSION= 1.10.4 CATEGORIES= science archivers graphics MASTER_SITES= https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-${PORTVERSION:R}/${DISTNAME}/src/ \ LOCAL/sunpoet MAINTAINER= sunpoet@FreeBSD.org COMMENT= Hierarchical Data Format library (from NCSA) LICENSE= BSD4CLAUSE LICENSE_FILE= ${WRKSRC}/COPYING CONFLICTS_INSTALL= hdf-4.[0-9]* hdf5-1.6.[0-9]* OPTIONS_DEFINE= DEBUG EXAMPLES FORTRAN SZIP OPTIONS_DEFAULT=SZIP OPTIONS_SUB= yes USES= compiler:c11 libtool localbase tar:bzip2 CONFIGURE_ARGS= --enable-cxx \ --enable-hl \ --enable-instrument \ --enable-strict-format-checks GNU_CONFIGURE= yes INSTALL_TARGET= install-strip MAKE_JOBS_UNSAFE= yes TEST_TARGET= check USE_LDCONFIG= yes PORTEXAMPLES= * DEBUG_CONFIGURE_OFF= --enable-build-mode=production DEBUG_CONFIGURE_ON= --enable-build-mode=debug FORTRAN_CONFIGURE_ENABLE= fortran FORTRAN_CONFIGURE_ENV= F9X=${FC} FORTRAN_USES= fortran SZIP_CONFIGURE_ON= --with-szlib=${LOCALBASE} SZIP_LIB_DEPENDS= libsz.so:science/szip post-patch: @${REINPLACE_CMD} -e 's|-O3||g' ${WRKSRC}/config/gnu-flags @${REINPLACE_CMD} \ -e '/LD_LIBRARY_PATH/ s|^|#|' \ -e 's|/share/hdf5_examples|/${EXAMPLESDIR_REL}|' \ -e 's|(INSTALL)|(INSTALL_DATA)|' \ `${FIND} ${WRKSRC} -regex '.*/examples/Makefile.in'` @${REINPLACE_CMD} -e 's|\[ -a|\[ -f|g' `${FIND} ${WRKSRC} -name \*.sh\*` .include Index: head/science/hdf5/distinfo =================================================================== --- head/science/hdf5/distinfo (revision 489411) +++ head/science/hdf5/distinfo (revision 489412) @@ -1,3 +1,3 @@ -TIMESTAMP = 1523098063 -SHA256 (hdf5-1.10.2.tar.bz2) = 1cad5b7bfdf128dfc53cd16fba48f6e7ae4e93c75c371d9ec8dfc4df0c1fcb71 -SIZE (hdf5-1.10.2.tar.bz2) = 8609163 +TIMESTAMP = 1541673300 +SHA256 (hdf5-1.10.4.tar.bz2) = 1267ff06aaedc04ca25f7c6026687ea2884b837043431195f153401d942b28df +SIZE (hdf5-1.10.4.tar.bz2) = 8598986 Index: head/science/hdf5/pkg-plist =================================================================== --- head/science/hdf5/pkg-plist (revision 489411) +++ head/science/hdf5/pkg-plist (revision 489412) @@ -1,160 +1,161 @@ bin/gif2h5 bin/h52gif bin/h5c++ bin/h5cc bin/h5clear bin/h5copy bin/h5debug bin/h5diff bin/h5dump %%FORTRAN%%bin/h5fc bin/h5format_convert bin/h5import bin/h5jam bin/h5ls bin/h5mkgrp bin/h5perf_serial bin/h5redeploy bin/h5repack bin/h5repart bin/h5stat bin/h5unjam bin/h5watch include/H5ACpublic.h include/H5AbstractDs.h include/H5Apublic.h include/H5ArrayType.h include/H5AtomType.h include/H5Attribute.h include/H5Classes.h include/H5CommonFG.h include/H5CompType.h include/H5Cpp.h include/H5CppDoc.h include/H5Cpublic.h include/H5DOpublic.h include/H5DSpublic.h +include/H5DaccProp.h include/H5DataSet.h include/H5DataSpace.h include/H5DataType.h include/H5DcreatProp.h include/H5Dpublic.h include/H5DxferProp.h include/H5EnumType.h include/H5Epubgen.h include/H5Epublic.h include/H5Exception.h include/H5FDcore.h include/H5FDdirect.h include/H5FDfamily.h include/H5FDlog.h include/H5FDmpi.h include/H5FDmpio.h include/H5FDmulti.h include/H5FDpublic.h include/H5FDsec2.h include/H5FDstdio.h include/H5FaccProp.h include/H5FcreatProp.h include/H5File.h include/H5FloatType.h include/H5Fpublic.h include/H5Gpublic.h include/H5Group.h include/H5IMpublic.h include/H5IdComponent.h include/H5Include.h include/H5IntType.h include/H5Ipublic.h include/H5LDpublic.h include/H5LTpublic.h include/H5LaccProp.h include/H5LcreatProp.h include/H5Library.h include/H5Location.h include/H5Lpublic.h include/H5MMpublic.h include/H5Object.h include/H5OcreatProp.h include/H5Opublic.h include/H5PLextern.h include/H5PLpublic.h include/H5PTpublic.h include/H5PacketTable.h include/H5Ppublic.h include/H5PredType.h include/H5PropList.h include/H5Rpublic.h include/H5Spublic.h include/H5StrType.h include/H5TBpublic.h include/H5Tpublic.h include/H5VarLenType.h include/H5Zpublic.h include/H5api_adpt.h %%FORTRAN%%include/H5f90i.h %%FORTRAN%%include/H5f90i_gen.h include/H5overflow.h include/H5pubconf.h include/H5public.h include/H5version.h %%FORTRAN%%include/h5_gen.mod %%FORTRAN%%include/h5a.mod %%FORTRAN%%include/h5d.mod %%FORTRAN%%include/h5ds.mod %%FORTRAN%%include/h5e.mod %%FORTRAN%%include/h5f.mod %%FORTRAN%%include/h5fortkit.mod %%FORTRAN%%include/h5fortran_types.mod %%FORTRAN%%include/h5g.mod %%FORTRAN%%include/h5global.mod %%FORTRAN%%include/h5i.mod %%FORTRAN%%include/h5im.mod %%FORTRAN%%include/h5l.mod %%FORTRAN%%include/h5lib.mod %%FORTRAN%%include/h5lt.mod %%FORTRAN%%include/h5lt_const.mod %%FORTRAN%%include/h5o.mod %%FORTRAN%%include/h5p.mod %%FORTRAN%%include/h5r.mod %%FORTRAN%%include/h5s.mod %%FORTRAN%%include/h5t.mod %%FORTRAN%%include/h5tb.mod %%FORTRAN%%include/h5tb_const.mod %%FORTRAN%%include/h5z.mod include/hdf5.h %%FORTRAN%%include/hdf5.mod include/hdf5_hl.h %%FORTRAN%%include/tstds.mod %%FORTRAN%%include/tstds_tests.mod %%FORTRAN%%include/tstimage.mod %%FORTRAN%%include/tstimage_tests.mod %%FORTRAN%%include/tstlite.mod %%FORTRAN%%include/tstlite_tests.mod %%FORTRAN%%include/tsttable.mod %%FORTRAN%%include/tsttable_tests.mod lib/libhdf5.a lib/libhdf5.settings lib/libhdf5.so -lib/libhdf5.so.101 -lib/libhdf5.so.101.1.0 +lib/libhdf5.so.103 +lib/libhdf5.so.103.0.0 lib/libhdf5_cpp.a lib/libhdf5_cpp.so -lib/libhdf5_cpp.so.102 -lib/libhdf5_cpp.so.102.0.0 +lib/libhdf5_cpp.so.103 +lib/libhdf5_cpp.so.103.0.0 %%FORTRAN%%lib/libhdf5_fortran.a %%FORTRAN%%lib/libhdf5_fortran.so %%FORTRAN%%lib/libhdf5_fortran.so.100 -%%FORTRAN%%lib/libhdf5_fortran.so.100.1.1 +%%FORTRAN%%lib/libhdf5_fortran.so.100.1.2 lib/libhdf5_hl.a lib/libhdf5_hl.so lib/libhdf5_hl.so.100 -lib/libhdf5_hl.so.100.1.0 +lib/libhdf5_hl.so.100.1.1 lib/libhdf5_hl_cpp.a lib/libhdf5_hl_cpp.so lib/libhdf5_hl_cpp.so.100 -lib/libhdf5_hl_cpp.so.100.1.1 +lib/libhdf5_hl_cpp.so.100.1.2 %%FORTRAN%%lib/libhdf5hl_fortran.a %%FORTRAN%%lib/libhdf5hl_fortran.so %%FORTRAN%%lib/libhdf5hl_fortran.so.100 -%%FORTRAN%%lib/libhdf5hl_fortran.so.100.0.2 +%%FORTRAN%%lib/libhdf5hl_fortran.so.100.0.3 Index: head/science/jdftx/Makefile =================================================================== --- head/science/jdftx/Makefile (revision 489411) +++ head/science/jdftx/Makefile (revision 489412) @@ -1,60 +1,60 @@ # $FreeBSD$ PORTNAME= jdftx DISTVERSIONPREFIX= v DISTVERSION= 1.4.2-74 -PORTREVISION= 3 +PORTREVISION= 4 DISTVERSIONSUFFIX= -gba743849 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org COMMENT= Software for joint density functional theory in chemistry LICENSE= GPLv3+ LICENSE_FILE= ${WRKSRC}/COPYING BUILD_DEPENDS= bash:shells/bash LIB_DEPENDS= libblas.so:math/blas \ libcblas.so:math/cblas \ libfftw3.so:math/fftw3 \ libgsl.so:math/gsl \ liblapack.so:math/lapack RUN_DEPENDS= bash:shells/bash TEST_DEPENDS= bash:shells/bash USES= compiler:c++11-lang cmake fortran localbase:ldflags shebangfix SHEBANG_GLOB= *.sh SHEBANG_FILES= scripts/* SHEBANG_LANG= octave USE_GITHUB= yes GH_ACCOUNT= shankar1729 USE_LDCONFIG= yes TEST_TARGET= test WRKSRC_SUBDIR= ${PORTNAME} CMAKE_ARGS= -DLAPACK_LIBRARIES:STRING="-llapack -lblas" OPTIONS_DEFINE= MPI LIBXC HDF5 SCALAPACK OCTAVE OPTIONS_DEFAULT= MPI LIBXC MPI_CMAKE_BOOL= EnableMPI MPI_LIB_DEPENDS= libmpich.so:net/mpich LIBXC_DESC= Use LibXC for additional exchange-correlation functionals LIBXC_CMAKE_BOOL= EnableLibXC LIBXC_LIB_DEPENDS= libxc.so:science/libxc HDF5_CMAKE_BOOL= EnableHDF5 HDF5_LIB_DEPENDS= libhdf5.so:science/hdf5 HDF5_BROKEN= use of undeclared identifier 'H5Pset_dxpl_mpio' # https://github.com/shankar1729/jdftx/issues/37 SCALAPACK_DESC= Enable ScaLAPACK support SCALAPACK_CMAKE_BOOL= EnableScaLAPACK SCALAPACK_LIB_DEPENDS= libscalapack.so:math/scalapack OCTAVE_DESC= With Octave support (only for one script: dryRunToPDB) OCTAVE_USES= octave .include Index: head/science/lm/Makefile =================================================================== --- head/science/lm/Makefile (revision 489411) +++ head/science/lm/Makefile (revision 489412) @@ -1,82 +1,82 @@ # $FreeBSD$ PORTNAME= lm DISTVERSION= 2.3.0 -PORTREVISION= 3 +PORTREVISION= 4 DISTVERSIONSUFFIX= -src CATEGORIES= science MASTER_SITES= http://scs.illinois.edu/schulten/${PORTNAME}/download/${PORTNAME}${DISTVERSION:R:S/.//}/ PKGNAMESUFFIX= -uiuc MAINTAINER= yuri@FreeBSD.org COMMENT= Software for sampling trajectories of the reaction-diffusion equations LICENSE= UIUC_OPEN_SOURCE_LICENSE LICENSE_NAME= University of Illinois Open Source License LICENSE_FILE= ${WRKSRC}/LICENSE LICENSE_PERMS= auto-accept dist-mirror dist-sell pkg-mirror pkg-sell BUILD_DEPENDS= swig3.0:devel/swig30 LIB_DEPENDS= libhdf5.so:science/hdf5 \ libprotobuf.so:devel/protobuf \ libsz.so:science/szip USES= compiler:c++11-lang gettext-runtime gmake WRKSRC= ${WRKDIR}/${PORTNAME}-${DISTVERSION} CXXFLAGS+= -DLINUX MAKE_ENV= BUILD_DIR=${WRKSRC} PROTOBUF_DIR=${LOCALBASE} USE_CXXSTD= c++11 OPTIONS_DEFINE= MPI PYTHON VMD OPTIONS_DEFAULT= MPI PYTHON # VMD can't be default because VMD requires manual tarball fetch OPTIONS_SUB= yes MPI_USES= fortran MPI_VARS= XUSE_MPI=1 MPI_VARS_OFF= XUSE_MPI=0 MPI_LIB_DEPENDS= libmpich.so:net/mpich PYTHON_USES= python PYTHON_VARS= XUSE_PYTHON=1 PYTHON_VARS_OFF= XUSE_PYTHON=0 PYTHON_CXXFLAGS= -I${PYTHON_SITELIBDIR}/numpy/core/include PYTHON_BUILD_DEPENDS= ${PYTHON_SITELIBDIR}/numpy/core/include/numpy/arrayobject.h:math/py-numpy@${PY_FLAVOR} VMD_DESC= Build the VMD plugin VMD_VARS= XUSE_VMD=1 VMD_VARS_OFF= XUSE_VMD=0 VMD_VARS= VMD_ARCH=${ARCH:S/amd64/FREEBSDAMD64/:S/${ARCH}/FREEBSD/} VMD_BUILD_DEPENDS= ${LOCALBASE}/vmd/plugins/${VMD_ARCH}/molfile/libmolfile_plugin.h:science/vmd VMD_PLIST_SUB= VMD_ARCH=${VMD_ARCH} post-patch: @${CP} ${WRKSRC}/docs/config/local.mk.linux ${WRKSRC}/local.mk @${REINPLACE_CMD} -i '' ' \ s|USE_MPI := 0|USE_MPI := ${XUSE_MPI}|; \ s|USE_PYTHON := 1|USE_PYTHON := ${XUSE_PYTHON}|; \ s|USE_VMD := 1|USE_VMD := ${XUSE_VMD}|; \ s|USE_CUDA := 1|USE_CUDA := 0|; \ s|swig|swig3.0|; \ s|/usr/local|${LOCALBASE}|; \ s|INSTALL_PREFIX := /opt/lm|INSTALL_PREFIX := ${STAGEDIR}${PREFIX}|; \ s|BUILD_DIR := Build-linux|BUILD_DIR := Build-freebsd|; \ s|CCFLAGS := -m64 -O2|CCFLAGS := $$(CXXFLAGS)|; \ s|gcc|${CC}|; \ s|g++|${CXX}|; \ s| -lrt||' \ ${WRKSRC}/local.mk post-patch-MPI-on: @${REINPLACE_CMD} -i '' ' \ s|MPI_COMPILE_FLAGS = .*|MPI_COMPILE_FLAGS =|; \ s|MPI_LINK_FLAGS = .*|MPI_LINK_FLAGS = -lmpich ${LOCALBASE}/lib/gcc${GCC_DEFAULT}/libgcc_s.so|' \ ${WRKSRC}/local.mk post-patch-PYTHON-on: @${REINPLACE_CMD} -i '' 's|python-config|${PYTHON_CMD}-config|' ${WRKSRC}/local.mk post-patch-VMD-on: @${REINPLACE_CMD} -i '' 's|LINUXAMD64|${VMD_ARCH}|' ${WRKSRC}/local.mk .include Index: head/science/meep/Makefile =================================================================== --- head/science/meep/Makefile (revision 489411) +++ head/science/meep/Makefile (revision 489412) @@ -1,64 +1,64 @@ # Created by: Stas Timokhin # $FreeBSD$ PORTNAME= meep PORTVERSION= 1.2.1 -PORTREVISION= 16 +PORTREVISION= 17 CATEGORIES= science MASTER_SITES= http://ab-initio.mit.edu/meep/ MAINTAINER= devel@stasyan.com COMMENT= FDTD simulation software to model electromagnetic systems LICENSE= GPLv2 LICENSE_FILE= ${WRKSRC}/COPYING BUILD_DEPENDS= harminv:science/harminv \ gsed:textproc/gsed LIB_DEPENDS= libfftw3.so:math/fftw3 \ libblas.so:math/blas \ libguile-2.0.so:lang/guile2 \ libctl.so:science/libctl \ libgc-threaded.so:devel/boehm-gc-threaded \ libgsl.so:math/gsl \ libhdf5.so:science/hdf5 \ liblapack.so:math/lapack RUN_DEPENDS= harminv:science/harminv USES= fortran gettext gmake iconv libtool pathfix pkgconfig GNU_CONFIGURE= yes USE_GCC= yes CPPFLAGS+= -I${LOCALBASE}/include LDFLAGS+= -L${LOCALBASE}/lib MAKE_ARGS+= CC="${CC}" CXX="${CXX}" OPTIONS_RADIO= MPI OPTIONS_RADIO_MPI= OPENMPI MPICH2 OPTIONS_DEFAULT= ${OPTIONS_DEFAULT_${OPSYS}} OPTIONS_DEFAULT_FreeBSD= MPICH2 OPENMPI_DESC= MPI support (with OpenMPI) .include .if ${PORT_OPTIONS:MMPICH2} || ${PORT_OPTIONS:MOPENMPI} CONFIGURE_ARGS+= --with-mpi PLIST_SUB+= MPI="" NOMPI="@comment " .else CONFIGURE_ARGS+= --without-mpi PLIST_SUB+= MPI="@comment " NOMPI="" .endif .if ${PORT_OPTIONS:MMPICH2} LIB_DEPENDS+= libmpich.so:net/mpich2 CONFIGURE_ENV+= MPICXX=${LOCALBASE}/bin/mpicc CFLAGS+= -I${LOCALBASE}/include .endif .if ${PORT_OPTIONS:MOPENMPI} BUILD_DEPENDS+= ${LOCALBASE}/mpi/openmpi/bin/mpiCC:net/openmpi RUN_DEPENDS+= ${LOCALBASE}/mpi/openmpi/bin/mpirun:net/openmpi CONFIGURE_ENV+= MPICXX=${LOCALBASE}/mpi/openmpi/bin/mpiCC CFLAGS+= -I${LOCALBASE}/mpi/openmpi/include .endif .include Index: head/science/minc2/Makefile =================================================================== --- head/science/minc2/Makefile (revision 489411) +++ head/science/minc2/Makefile (revision 489412) @@ -1,45 +1,45 @@ # Created by: jbacon # $FreeBSD$ PORTNAME= minc PORTVERSION= 2.2.00 DISTVERSIONPREFIX= release- -PORTREVISION= 7 +PORTREVISION= 8 PORTEPOCH= 1 CATEGORIES= science biology PKGNAMESUFFIX= 2 MAINTAINER= ports@FreeBSD.org COMMENT= Medical Imaging NetCDF LICENSE= MIT LICENSE_FILE= ${WRKSRC}/COPYING LIB_DEPENDS= libhdf5.so:science/hdf5 \ libnetcdf.so:science/netcdf RUN_DEPENDS= bash:shells/bash USE_GITHUB= yes GH_ACCOUNT= BIC-MNI MAKE_JOBS_UNSAFE= yes USES= autoreconf bison gmake libtool perl5 shebangfix SHEBANG_FILES= progs/mincview/mincview GNU_CONFIGURE= yes CONFIGURE_ARGS= --enable-shared=yes --enable-static=yes INSTALL_TARGET= install-strip USE_LDCONFIG= yes CFLAGS+= -Wno-error=return-type CPPFLAGS+= -I${LOCALBASE}/include LDFLAGS+= -L${LOCALBASE}/lib CONFLICTS= minc-1* zh-tk-[0-9]* pre-patch: @${RM} ${WRKSRC}/ac_config_aux/* @${RM} ${WRKSRC}/progs/minccalc/gram.[ch] @${RM} ${WRKSRC}/progs/mincgen/ncgentab.[ch] .include Index: head/science/mpb/Makefile =================================================================== --- head/science/mpb/Makefile (revision 489411) +++ head/science/mpb/Makefile (revision 489412) @@ -1,53 +1,53 @@ # Created by: ijliao # $FreeBSD$ PORTNAME= mpb PORTVERSION= 1.5 -PORTREVISION= 11 +PORTREVISION= 12 CATEGORIES= science MASTER_SITES= http://ab-initio.mit.edu/mpb/ MAINTAINER= rhurlin@gwdg.de COMMENT= MIT Photonic-Bands LICENSE= GPLv2 BUILD_DEPENDS= bash:shells/bash LIB_DEPENDS= libfftw.so:math/fftw \ libhdf5.so:science/hdf5 \ libctl.so:science/libctl \ libguile-2.0.so:lang/guile2 OPTIONS_DEFINE= ATLAS NLOPT ATLAS_DESC= Use math/atlas instead of math/lapack NLOPT_DESC= Use math/nlopt (check also in science/libctl) USES= fortran libtool pkgconfig GNU_CONFIGURE= yes MAKE_JOBS_UNSAFE= yes CPPFLAGS+= -I${LOCALBASE}/include LDFLAGS+= -L${LOCALBASE}/lib NLOPT_LIB_DEPENDS= libnlopt.so:math/nlopt .include .if ${PORT_OPTIONS:MATLAS} LIB_DEPENDS+= libatlas.so:math/atlas CONFIGURE_ARGS+= --with-lapack=-lalapack .else LIB_DEPENDS+= libblas.so:math/blas \ liblapack.so:math/lapack CONFIGURE_ARGS+= --with-lapack=-llapack .endif post-patch: @${REINPLACE_CMD} -e 's|-lhdf5 |-lhdf5 -lpthread |g' \ ${WRKSRC}/configure @${REINPLACE_CMD} \ -e '/INSTALL/s/$$(prefix)/$$(DESTDIR)$$(prefix)/' \ -e '/INSTALL/s/$$(mandir)/$$(DESTDIR)$$(mandir)/' \ ${WRKSRC}/mpb/Makefile.in ${WRKSRC}/utils/Makefile.in .include Index: head/science/netcdf/Makefile =================================================================== --- head/science/netcdf/Makefile (revision 489411) +++ head/science/netcdf/Makefile (revision 489412) @@ -1,57 +1,57 @@ # Created by: Sunpoet Po-Chuan Hsieh # $FreeBSD$ PORTNAME= netcdf PORTVERSION= 4.6.1 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= science MASTER_SITES= https://www.unidata.ucar.edu/downloads/netcdf/ftp/ \ ftp://ftp.unidata.ucar.edu/pub/netcdf/ \ LOCAL/sunpoet MAINTAINER= sunpoet@FreeBSD.org COMMENT= C library for machine-independent, array-oriented data access LICENSE= UCAR_UNIDATA LICENSE_NAME= University Corporation for Atmospheric Research/Unidata LICENSE_FILE= ${WRKSRC}/COPYRIGHT LICENSE_PERMS= dist-mirror dist-sell pkg-mirror pkg-sell auto-accept LIB_DEPENDS= libhdf5.so:science/hdf5 CONFLICTS_INSTALL= hdf-4.[0-9]* netcdf-3.[0-9]* netcdf3-3.[0-9]* OPTIONS_DEFINE= DAP DOCS DOXYGEN SZIP OPTIONS_DEFAULT=DAP SZIP OPTIONS_SUB= yes DAP_DESC= Build DAP client and remote testing SZIP_DESC= SZIP support (required if HDF5 was built with SZIP) CONFIGURE_ARGS= --disable-filter-testing --enable-netcdf-4 CPPFLAGS+= -fPIC -DPIC GNU_CONFIGURE= yes INSTALL_TARGET= install-strip TEST_TARGET= check USE_LDCONFIG= yes USES= libtool localbase ncurses pathfix pkgconfig:run DAP_CONFIGURE_ENABLE= dap DAP_LIB_DEPENDS= libcurl.so:ftp/curl DOXYGEN_BUILD_DEPENDS= doxygen:devel/doxygen DOXYGEN_CONFIGURE_ENABLE= doxygen DOXYGEN_IMPLIES= DOCS DOXYGEN_PORTDOCS= * SZIP_LIB_DEPENDS= libsz.so:science/szip SZIP_LIBS= -lsz post-patch: @${REINPLACE_CMD} -e 's|-ldl ||g' ${WRKSRC}/configure post-build-DOXYGEN-on: cd ${WRKSRC}/docs/ && ${LOCALBASE}/bin/doxygen . post-install-DOXYGEN-on: ${MKDIR} ${STAGEDIR}${DOCSDIR}/ cd ${WRKSRC}/docs/html/ && ${COPYTREE_SHARE} . ${STAGEDIR}${DOCSDIR} .include Index: head/science/paraview/Makefile =================================================================== --- head/science/paraview/Makefile (revision 489411) +++ head/science/paraview/Makefile (revision 489412) @@ -1,103 +1,103 @@ # Created by: anholt@FreeBSD.org # $FreeBSD$ PORTNAME= paraview DISTVERSION= 5.5.1 -PORTREVISION= 6 +PORTREVISION= 7 CATEGORIES= science graphics MASTER_SITES= http://www.paraview.org/files/v${VERMAJORMINOR}/ DISTNAME= ParaView-v${PORTVERSION} PATCH_SITES= https://gitlab.kitware.com/${PORTNAME}/${PORTNAME}/commit/ PATCHFILES= 931c779dde84.patch:-p1 MAINTAINER= devel@stasyan.com COMMENT= Powerful scientific data visualization application LICENSE= ParaView_License_1.2 LICENSE_NAME= ParaView_License LICENSE_FILE= ${PATCH_WRKSRC}/License_v1.2.txt LICENSE_PERMS= dist-mirror dist-sell pkg-mirror pkg-sell auto-accept BUILD_DEPENDS= ${PYTHON_SITELIBDIR}/matplotlib/pyplot.py:math/py-matplotlib@${PY_FLAVOR} LIB_DEPENDS= libhdf5.so:science/hdf5 \ libpng.so:graphics/png \ libtiff.so:graphics/tiff \ libfreetype.so:print/freetype2 \ libexpat.so:textproc/expat2 \ libjbig.so:graphics/jbigkit \ liborc-0.4.so:devel/orc \ libpcre.so:devel/pcre \ libffi.so:devel/libffi \ libdrm.so:graphics/libdrm \ libfontconfig.so:x11-fonts/fontconfig \ libprotobuf.so:devel/protobuf RUN_DEPENDS= bash:shells/bash \ ${PYTHON_SITELIBDIR}/matplotlib/pyplot.py:math/py-matplotlib@${PY_FLAVOR} USES= alias cmake jpeg localbase python:2.7 qt:5 shebangfix USE_QT= core gui help network sql widgets x11extras xmlpatterns buildtools_build qmake_build USE_GL= gl glu USE_XORG= x11 xt xext ice xdmcp xau xcb xfixes xdamage xxf86vm xrender sm xorgproto USE_LDCONFIG= yes USE_GSTREAMER= yes CONFLICTS_INSTALL= ${PYTHON_PKGNAMEPREFIX}pygments CMAKE_ARGS+= -DBUILD_SHARED_LIBS="ON" \ -DVTK_USE_SYSTEM_PNG="ON" \ -DVTK_USE_SYSTEM_JPEG="ON" \ -DVTK_USE_SYSTEM_TIFF="ON" \ -DVTK_USE_SYSTEM_ZLIB="ON" \ -DVTK_USE_SYSTEM_FREETYPE="ON" \ -DVTK_USE_SYSTEM_EXPAT="ON" \ -DVTK_USE_SYSTEM_PROTOBUF="ON" \ -DVTK_USE_X="ON" \ -DVTK_HAVE_GETSOCKNAME_WITH_SOCKLEN_T=1 \ -DPARAVIEW_ENABLE_PYTHON:BOOL="ON" \ -DPARAVIEW_ENABLE_FFMPEG:BOOL="OFF" \ -DBUILD_TESTING:BOOL="OFF" \ -DExternalData_OBJECT_STORES="${WRKDIR}/VTK/ExternalData/MD5" \ -DFREETYPE_INCLUDE_DIRS="${LOCALBASE}/include/freetype2" MAKE_ENV= XDG_CONFIG_HOME=${WRKDIR} SHEBANG_FILES= Catalyst/catalyze.py VTK/Examples/SearchScript.sh \ VTK/Utilities/Maintenance/*.sh OPTIONS_DEFINE= OSMESA GL2PS DOCS OPTIONS_SUB= yes OSMESA_DESC= Use Mesa for off-screen rendering GL2PS_DESC= Install support conversion OpenGL to PostScript # VTKMPEG2 "Install patented MPEG2 encoder module" Off \ VERMAJORMINOR= ${PORTVERSION:R} OSMESA_LIB_DEPENDS= libOSMesa.so:graphics/libosmesa OSMESA_CMAKE_BOOL= VTK_OPENGL_HAS_OSMESA OSMESA_CMAKE_ON= -DOSMESA_INCLUDE_DIR:PATH=${LOCALBASE}/include/Mesa \ -DOSMESA_LIBRARY:FILEPATH=${LOCALBASE}/lib/libOSMesa.so GL2PS_LIB_DEPENDS= libgl2ps.so:print/gl2ps GL2PS_CMAKE_BOOL= VTK_USE_GL2PS PLIST_SUB+= VERMAJORMINOR=${VERMAJORMINOR} CMAKE2INST= ParaViewConfig.cmake \ cmake_install.cmake LIB_INSTDIR= ${PREFIX}/lib/${PORTNAME}-${VERMAJORMINOR} pre-configure: @${REINPLACE_CMD} -e 's|png_set_gray_1_2_4_to_8|png_set_expand_gray_1_2_4_to_8|' \ ${PATCH_WRKSRC}/VTK/IO/Image/vtkPNGReader.cxx @${REINPLACE_CMD} -e 's|/bin/bash|${LOCALBASE}/bin/bash|' \ ${PATCH_WRKSRC}/VTK/Utilities/Maintenance/vtk_site_history.py post-install: .for c2f in ${CMAKE2INST} ${SED} -e 's|${BUILD_WRKSRC}|${LIB_INSTDIR}|g' \ -e 's|${PATCH_WRKSRC}|${LIB_INSTDIR}|g' \ ${BUILD_WRKSRC}/${c2f} > ${STAGEDIR}${LIB_INSTDIR}/`${BASENAME} ${c2f}` .endfor ${INSTALL_DATA} ${PATCH_WRKSRC}/CMake/UseParaView.cmake \ ${STAGEDIR}${PREFIX}/lib/${PORTNAME}-${VERMAJORMINOR} .include Index: head/science/py-h5py/Makefile =================================================================== --- head/science/py-h5py/Makefile (revision 489411) +++ head/science/py-h5py/Makefile (revision 489412) @@ -1,42 +1,43 @@ # Created by: TAOKA Fumiyoshi # $FreeBSD$ PORTNAME= h5py PORTVERSION= 2.9.0 +PORTREVISION= 1 CATEGORIES= science python MASTER_SITES= CHEESESHOP PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= sunpoet@FreeBSD.org COMMENT= General-purpose Python interface to the HDF5 library LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/licenses/license.txt BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pkgconfig>=0:devel/py-pkgconfig@${PY_FLAVOR} \ ${RUN_DEPENDS} LIB_DEPENDS= libhdf5.so:science/hdf5 RUN_DEPENDS= ${PYNUMPY} \ ${PYTHON_PKGNAMEPREFIX}six>=0:devel/py-six@${PY_FLAVOR} USES= python USE_PYTHON= autoplist concurrent cython distutils OPTIONS_DEFINE= DOCS EXAMPLES post-install: ${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/h5py/*.so post-install-DOCS-on: @${MKDIR} ${STAGEDIR}${DOCSDIR} ${INSTALL_DATA} ${WRKSRC}/README.rst ${STAGEDIR}${DOCSDIR} cd ${WRKSRC}/docs/ && ${COPYTREE_SHARE} . ${STAGEDIR}${DOCSDIR} post-install-EXAMPLES-on: @${MKDIR} ${STAGEDIR}${EXAMPLESDIR} ${INSTALL_DATA} ${WRKSRC}/examples/*.py ${STAGEDIR}${EXAMPLESDIR} do-test: cd ${WRKSRC} && ${PYTHON_CMD} ${PYSETUP} test .include Index: head/science/py-netCDF4/Makefile =================================================================== --- head/science/py-netCDF4/Makefile (revision 489411) +++ head/science/py-netCDF4/Makefile (revision 489412) @@ -1,58 +1,58 @@ # Created by: Wen Heping # $FreeBSD$ PORTNAME= netCDF4 PORTVERSION= 1.3.1 -PORTREVISION= 3 +PORTREVISION= 4 DISTVERSIONPREFIX= v DISTVERSIONSUFFIX= rel CATEGORIES= science python PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= bofh@FreeBSD.org COMMENT= Python Interface to the NetCDF Library (versions 3 and 4) LICENSE= MIT BUILD_DEPENDS= ${PYNUMPY} \ ${LOCALBASE}/bin/cython:lang/cython LIB_DEPENDS= libhdf5.so:science/hdf5 \ libnetcdf.so:science/netcdf RUN_DEPENDS:= ${BUILD_DEPENDS} OPTIONS_DEFINE= DOCS EXAMPLES USES= python USE_PYTHON= autoplist concurrent distutils cython DOCSDIR= ${PREFIX}/share/doc/py-${PORTNAME} EXAMPLESDIR= ${PREFIX}/share/examples/py-${PORTNAME} PORTDOCS= * PORTEXAMPLES= * GH_ACCOUNT= Unidata GH_PROJECT= netcdf4-python USE_GITHUB= yes post-patch: @${ECHO_CMD} -n > ${WRKSRC}/setup.cfg @${ECHO_CMD} "[options]" >> ${WRKSRC}/setup.cfg @${ECHO_CMD} "use_ncconfig=True" >> ${WRKSRC}/setup.cfg @${ECHO_CMD} "ncconfig=${LOCALBASE}/bin/nc-config" >> ${WRKSRC}/setup.cfg @${ECHO_CMD} "[directories]" >> ${WRKSRC}/setup.cfg @${ECHO_CMD} "HDF5_libdir=${LOCALBASE}/lib" >> ${WRKSRC}/setup.cfg @${ECHO_CMD} "HDF5_incdir=${LOCALBASE}/include" >> ${WRKSRC}/setup.cfg post-install: ${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/netCDF4/_netCDF4.so ${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/netcdftime/_netcdftime.so post-install-DOCS-on: @${MKDIR} ${STAGEDIR}${DOCSDIR} (cd ${WRKSRC}/docs && ${COPYTREE_SHARE} . ${STAGEDIR}${DOCSDIR}) post-install-EXAMPLES-on: @${MKDIR} ${STAGEDIR}${EXAMPLESDIR} (cd ${WRKSRC}/examples && ${INSTALL_DATA} * ${STAGEDIR}${EXAMPLESDIR}) .include Index: head/science/qmcpack/Makefile =================================================================== --- head/science/qmcpack/Makefile (revision 489411) +++ head/science/qmcpack/Makefile (revision 489412) @@ -1,37 +1,38 @@ # $FreeBSD$ PORTNAME= qmcpack DISTVERSIONPREFIX= v DISTVERSION= 3.6.0 +PORTREVISION= 1 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org COMMENT= Many-body ab initio Quantum Monte Carlo code for quantum chemstry LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE BROKEN_i386= undefined reference to `__atomic_load' LIB_DEPENDS= libboost_system.so:devel/boost-libs \ libfftw3.so:math/fftw3 \ libhdf5.so:science/hdf5 \ libmpich.so:net/mpich \ libomp.so:devel/openmp \ libopenblas.so:math/openblas \ libsz.so:science/szip USES= cmake compiler:c++11-lang fortran gnome localbase:ldflags pkgconfig USE_GITHUB= yes GH_ACCOUNT= ${PORTNAME:tu} USE_GNOME= libxml2 PROGS= convert4qmc qmc-check-affinity qmc-extract-eshdf-kvectors qmc-get-supercell qmcpack PLIST_FILES= ${PROGS:C/^/bin\//} do-install: .for p in ${PROGS} ${INSTALL_PROGRAM} ${BUILD_WRKSRC}/bin/${p} ${STAGEDIR}${PREFIX}/bin .endfor .include Index: head/science/rmf/Makefile =================================================================== --- head/science/rmf/Makefile (revision 489411) +++ head/science/rmf/Makefile (revision 489412) @@ -1,27 +1,27 @@ # $FreeBSD$ PORTNAME= rmf DISTVERSION= 1.1 -PORTREVISION= 3 +PORTREVISION= 4 CATEGORIES= science graphics MAINTAINER= yuri@FreeBSD.org COMMENT= Library to support reading and writing of Rich Molecular Format files LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/COPYING LIB_DEPENDS= libboost_system.so:devel/boost-libs \ libhdf5.so:science/hdf5 \ libsz.so:science/szip USES= compiler:c++11-lang cmake python:build shebangfix USE_GITHUB= yes GH_ACCOUNT= salilab GH_TAGNAME= f917cf2 SHEBANG_GLOB= *.py USE_LDCONFIG= yes BINARY_ALIAS= python=${PYTHON_CMD} .include Index: head/science/silo/Makefile =================================================================== --- head/science/silo/Makefile (revision 489411) +++ head/science/silo/Makefile (revision 489412) @@ -1,78 +1,78 @@ # Created by: Pedro F. Giffuni # $FreeBSD$ PORTNAME= silo PORTVERSION= 4.10.2 DISTVERSIONSUFFIX= -bsd -PORTREVISION= 9 +PORTREVISION= 10 CATEGORIES= science MASTER_SITES= http://wci.llnl.gov/content/assets/docs/simulation/computer-codes/${PORTNAME}/silo-${PORTVERSION}/ MAINTAINER= dbaio@FreeBSD.org COMMENT= Mesh and field I/O library and scientific database LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/COPYRIGHT USES= gmake libtool readline USE_LDCONFIG= yes GNU_CONFIGURE= yes CONFIGURE_ARGS= --enable-shared --disable-static INSTALL_TARGET= install-strip OPTIONS_DEFINE= FORTRAN HDF5 PYTHON QT4 OPTIONS_DEFAULT= HDF5 OPTIONS_SUB= yes FORTRAN_CONFIGURE_ENABLE= fortran FORTRAN_USES= fortran HDF5_LIB_DEPENDS= libhdf5.so:science/hdf5 HDF5_CONFIGURE_ON= --with-hdf5=${LOCALBASE}/include,${LOCALBASE}/lib HDF5_PLIST_SUB= SUFX_HDF5="h5" HDF5_PLIST_SUB_OFF= SUFX_HDF5="" PYTHON_CONFIGURE_ENABLE= pythonmodule PYTHON_USES= python:2.7 QT4_USES= qmake:no_env qt:4 QT4_USE= XORG=ice,sm,x11,xext,xi,xmu,xt \ QT=corelib,gui,linguisttools_build,moc_build,uic_build QT4_CONFIGURE_ON= --with-Qt-dir=${PREFIX} \ --with-Qt-lib="QtGui -lQtCore" QT4_CONFIGURE_ENABLE= silex QT4_DESKTOP_ENTRIES= "Silex" "Silex browser for Silo files" \ "" "silex" "" true .include .if ${PORT_OPTIONS:MQT4} DEPRECATED= Qt4 has been EOL since december 2015 EXPIRATION_DATE= 2019-03-15 .endif post-patch: @${REINPLACE_CMD} -e \ 's|\(_Qt_dir/include\)"|\1/qt4"| ; \ s|\(_Qt_dir/lib\)"|\1/qt4"| ; \ s|\(/uic\)"|\1-qt4"| ; \ s|\(/moc\)"|\1-qt4"| ; \ s|\(/lrelease\)"|\1-qt4"| ; \ s|\(/lupdate\)"|\1-qt4"|' ${WRKSRC}/configure @${REINPLACE_CMD} -e \ '/-avoid-version/s|^|#| ; \ /^install-data-am/s|:.*|:|' ${WRKSRC}/src/Makefile.in @${REINPLACE_CMD} -e \ '/-ldl/s|^|#|' ${WRKSRC}/tests/Makefile.in @${REINPLACE_CMD} -e \ 's|@libdir@|@pythondir@|' ${WRKSRC}/tools/python/Makefile.in @${REINPLACE_CMD} -e \ 's|\(INBUILD\));|\1, me);|' ${WRKSRC}/src/hdf5_drv/silo_hdf5.c .if defined(MAINTAINER_MODE) regression-test: build @cd ${WRKSRC}/tests && ${SETENV} ${MAKE_ENV} ${MAKE_CMD} check .endif .include Index: head/science/triqs/Makefile =================================================================== --- head/science/triqs/Makefile (revision 489411) +++ head/science/triqs/Makefile (revision 489412) @@ -1,48 +1,48 @@ # $FreeBSD$ PORTNAME= triqs DISTVERSION= 2.0 -PORTREVISION= 6 +PORTREVISION= 7 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org COMMENT= Toolbox for Research on Interacting Quantum Systems LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/COPYING.txt BROKEN= wrong LIB_DEPENDS BROKEN_i386= error: no matching function for call to 'max': https://github.com/TRIQS/triqs/issues/596 BUILD_DEPENDS= boost-libs>=1.53:devel/boost-libs \ ${PYNUMPY} LIB_DEPENDS= libcpp2py.so:devel/cpp2py \ libfftw3.so:math/fftw3 \ libgmp.so:math/gmp \ libhdf5.so:science/hdf5 \ libmpi.so:net/openmpi \ libopa.so:net/mpich \ libopenblas.so:math/openblas \ libsz.so:science/szip RUN_DEPENDS= ${PYNUMPY} PORTSCOUT= limit:^[0-9]+\.[0-9].*$$ USES= cmake:noninja fortran gettext-runtime python:2.7 # python:2.7 matches that in devel/cpp2py USE_GITHUB= yes GH_ACCOUNT= ${PORTNAME:tu} USE_LDCONFIG= yes # It requires c++17, which might be missing in compilers choosable with USES=compiler LLVM_VER= 60 BUILD_DEPENDS+= clang${LLVM_VER}:devel/llvm${LLVM_VER} CPP= clang-cpp${LLVM_VER} CC= clang${LLVM_VER} CXX= clang++${LLVM_VER} post-install: @cd ${STAGEDIR}${PREFIX} && ${RM} include/gtest.h lib/libgtest.so @cd ${STAGEDIR}${PREFIX} && ${RM} share/triqs.modulefile share/triqsvars.sh # https://github.com/TRIQS/triqs/issues/590 @cd ${STAGEDIR}${PREFIX} && ${RM} share/cmake/run_test.cmake .include Index: head/sysutils/slurm-wlm/Makefile =================================================================== --- head/sysutils/slurm-wlm/Makefile (revision 489411) +++ head/sysutils/slurm-wlm/Makefile (revision 489412) @@ -1,143 +1,143 @@ # $FreeBSD$ PORTNAME= slurm DISTVERSION= 17.02.11 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= sysutils MASTER_SITES= http://www.schedmd.com/download/latest/ \ http://www.schedmd.com/download/archive/ \ http://www.schedmd.com/download/development/ PKGNAMESUFFIX= -wlm MAINTAINER= jrm@FreeBSD.org COMMENT= Simple Linux Utility for Resource Management LICENSE= GPLv2+ LICENSE_FILE= ${WRKSRC}/COPYING LIB_DEPENDS= libjson-c.so:devel/json-c \ libsysinfo.so:devel/libsysinfo \ libmunge.so:security/munge \ liblz4.so:archivers/liblz4 USERS= slurm GROUPS= ${USERS} USES= gmake libtool pkgconfig python:build readline:port shebangfix \ ssl tar:bz2 USE_LDCONFIG= yes USE_PERL5= configure USE_RC_SUBR= slurmctld slurmd GNU_CONFIGURE= yes CONFIGURE_ARGS= --bindir=${PREFIX}/bin INSTALL_TARGET= install-strip PLIST_SUB= PORTVERSION="${PORTVERSION}" SHEBANG_FILES= doc/html/shtml2html.py doc/man/man2html.py OPTIONS_DEFINE= CURL DOCS GTK2 HDF5 HWLOC IPMI MYSQL RRD LINUX OPTIONS_DEFAULT=HDF5 HWLOC OPTIONS_SUB= yes CURL_DESC= Require cURL for elasticsearch plugins GTK2_DESC= Build sview GUI config tool HDF5_DESC= Job profiling using HDF5 HWLOC_DESC= Portable hardware locality IPMI_DESC= IPMI energy consumption accounting RRD_DESC= RRD external sensor data collection LINUX_DESC= Support jobacct_gather/linux (requires linprocfs) DOCS_BUILD_DEPENDS= man2html:textproc/man2html CURL_LIB_DEPENDS= libcurl.so:ftp/curl CURL_CONFIGURE_WITH= libcurl GTK2_USE= GNOME=cairo,gdkpixbuf2,glib20,gtk20 GTK2_LIB_DEPENDS= libfontconfig.so:x11-fonts/fontconfig \ libfreetype.so:print/freetype2 GTK2_USES= gettext # Neither of these work. See post-patch below. #GTK2_CONFIGURE_ENV_OFF= ac_gtk_test=no #GTK2_CONFIGURE_OFF= --disable-gtktest HDF5_LIB_DEPENDS= libhdf5.so:science/hdf5 \ libsz.so:science/szip HDF5_CONFIGURE_WITH= hdf5 HWLOC_LIB_DEPENDS= libhwloc.so:devel/hwloc HWLOC_CONFIGURE_WITH= hwloc IPMI_LIB_DEPENDS= libfreeipmi.so:sysutils/freeipmi IPMI_CONFIGURE_WITH= freeipmi MYSQL_USES= mysql MYSQL_CONFIGURE_with= mysql MYSQL_CONFIGURE_OFF= --with-mysql_config=/nonexistent RRD_LIB_DEPENDS= librrd.so:databases/rrdtool RRD_CONFIGURE_WITH= rrdtool LINUX_USES= linux CFLAGS+= -I${WRKSRC}/slurm -I${LOCALBASE}/include LDFLAGS+= -L${LOCALBASE}/lib -lsysinfo -lkvm # SLURM's configure enables interactive jobs if pty.h exists. Replacing # #include with appropriate headers will therefore not work, so instead # add a pty.h for the build. post-patch: @${CP} ${FILESDIR}/pty.h ${WRKSRC}/slurm @${REINPLACE_CMD} -e 's|sched_setaffinity|cpuset_setaffinity|g' \ ${WRKSRC}/configure @${REINPLACE_CMD} -e 's|/bin/mail|/usr/bin/mail|g' \ ${WRKSRC}/src/common/read_config.h \ ${WRKSRC}/contribs/seff/smail \ ${WRKSRC}/doc/html/configurator.easy.html.in \ ${WRKSRC}/doc/html/configurator.html.in \ ${WRKSRC}/contribs/cray/slurm.conf.template \ ${WRKSRC}/doc/man/man1/strigger.1 \ ${WRKSRC}/doc/man/man5/slurm.conf.5 @${REINPLACE_CMD} \ -e 's|=linux|=FreeBSD|g' \ -e 's|run/slurmctld.pid|run/slurm/slurmctld.pid|' \ -e 's|run/slurmd.pid|run/slurm/slurd.pid|' \ -e 's|SlurmdSpoolDir=.*|SlurmdSpoolDir=/var/spool/slurmd|' \ -e 's|StateSaveLocation=.*|StateSaveLocation=/var/run/slurm|' \ ${WRKSRC}/etc/slurm.conf.example post-patch-LINUX-on: @${REINPLACE_CMD} -e 's|"/proc|"/compat/linux/proc|g' \ ${WRKSRC}/src/slurmd/slurmstepd/req.c \ ${WRKSRC}/src/slurmd/slurmstepd/pdebug.c \ ${WRKSRC}/src/slurmd/slurmd/get_mach_stat.c \ ${WRKSRC}/src/slurmd/slurmd/read_proc.c \ ${WRKSRC}/src/slurmd/common/xcpuinfo.c \ ${WRKSRC}/src/slurmd/common/xcgroup.c \ ${WRKSRC}/src/slurmd/common/set_oomadj.c \ ${WRKSRC}/src/slurmd/common/proctrack.c \ ${WRKSRC}/src/common/callerid.c \ ${WRKSRC}/src/plugins/task/affinity/affinity.c \ ${WRKSRC}/src/plugins/acct_gather_energy/rapl/acct_gather_energy_rapl.c \ ${WRKSRC}/src/plugins/jobacct_gather/cgroup/jobacct_gather_cgroup.c \ ${WRKSRC}/src/plugins/jobacct_gather/common/common_jag.c \ ${WRKSRC}/src/plugins/jobacct_gather/linux/jobacct_gather_linux.c \ ${WRKSRC}/src/plugins/switch/cray/scaling.c \ ${WRKSRC}/src/plugins/proctrack/cray/proctrack_cray.c \ ${WRKSRC}/src/plugins/proctrack/cgroup/proctrack_cgroup.c \ ${WRKSRC}/src/plugins/proctrack/pgid/proctrack_pgid.c \ ${WRKSRC}/src/plugins/proctrack/linuxproc/kill_tree.c \ ${WRKSRC}/src/plugins/proctrack/lua/proctrack_lua.c \ ${WRKSRC}/src/plugins/acct_gather_filesystem/lustre/acct_gather_filesystem_lustre.c \ ${WRKSRC}/contribs/cray/pam_job.c \ ${WRKSRC}/contribs/lua/proctrack.lua # Hack around nonfunctional --disable-gtktest flag post-patch-GTK2-off: @${REINPLACE_CMD} -e 's|min_gtk_version=.*|min_gtk_version=2000.0.0|' \ ${WRKSRC}/configure post-install: ${INSTALL_DATA} ${WRKSRC}/etc/slurm.conf.example \ ${STAGEDIR}${PREFIX}/etc/slurm.conf.sample .include