Index: head/misc/snakemake/Makefile
===================================================================
--- head/misc/snakemake/Makefile	(revision 487947)
+++ head/misc/snakemake/Makefile	(revision 487948)
@@ -1,29 +1,29 @@
 # $FreeBSD$
 
 PORTNAME=	snakemake
-DISTVERSION=	5.3.1
+DISTVERSION=	5.4.0
 CATEGORIES=	misc
 MASTER_SITES=	CHEESESHOP
 
 MAINTAINER=	yuri@FreeBSD.org
 COMMENT=	Workflow management system
 
 LICENSE=	MIT
 
 RUN_DEPENDS=	${PYTHON_PKGNAMEPREFIX}appdirs>0:devel/py-appdirs@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}configargparse>0:devel/py-configargparse@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}datrie>0:devel/py-datrie@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}docutils>0:textproc/py-docutils@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}GitPython>0:devel/py-gitpython@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}jsonschema>0:devel/py-jsonschema@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}ratelimiter>0:devel/py-ratelimiter@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}requests>0:www/py-requests@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}wrapt>0:devel/py-wrapt@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}yaml>0:devel/py-yaml@${PY_FLAVOR}
 
 USES=		python:3.5+
 USE_PYTHON=	distutils noflavors autoplist
 
 NO_ARCH=	yes
 
 .include <bsd.port.mk>
Index: head/misc/snakemake/distinfo
===================================================================
--- head/misc/snakemake/distinfo	(revision 487947)
+++ head/misc/snakemake/distinfo	(revision 487948)
@@ -1,3 +1,3 @@
-TIMESTAMP = 1544248664
-SHA256 (snakemake-5.3.1.tar.gz) = a43d66d80d7bf83b0429cf03ab5500b2775bbe78a53eee9622c1a2cb802eac5f
-SIZE (snakemake-5.3.1.tar.gz) = 169876
+TIMESTAMP = 1545366441
+SHA256 (snakemake-5.4.0.tar.gz) = 26157e349988b3416b663c9695634a813edf02e2f658dbe48149fff028ab1793
+SIZE (snakemake-5.4.0.tar.gz) = 170784