Index: head/science/Makefile =================================================================== --- head/science/Makefile (revision 487782) +++ head/science/Makefile (revision 487783) @@ -1,315 +1,316 @@ # $FreeBSD$ # COMMENT = Scientific ports SUBDIR += 2d-rewriter SUBDIR += ALPSCore SUBDIR += InsightToolkit SUBDIR += MOOSE-neural-simulator SUBDIR += PETSc SUBDIR += R-cran-AMORE SUBDIR += R-cran-DCluster SUBDIR += R-cran-Epi SUBDIR += R-cran-bayesm SUBDIR += R-cran-cmprsk SUBDIR += R-cran-e1071 SUBDIR += R-cran-eco SUBDIR += R-cran-epicalc SUBDIR += R-cran-etm SUBDIR += R-cran-fastICA SUBDIR += R-cran-kernlab SUBDIR += R-cran-snow SUBDIR += R-cran-som SUBDIR += R-cran-udunits2 SUBDIR += abinit SUBDIR += afni SUBDIR += aircraft-datcom SUBDIR += antioch SUBDIR += atom SUBDIR += atompaw SUBDIR += avogadro SUBDIR += avogadro2 SUBDIR += avogadrolibs SUBDIR += bagel SUBDIR += berkeleygw SUBDIR += bddsolve SUBDIR += bodr SUBDIR += brian SUBDIR += buddy SUBDIR += cdcl SUBDIR += cdf SUBDIR += cdo SUBDIR += cgnslib SUBDIR += cgribex SUBDIR += checkmol SUBDIR += chemical-mime-data SUBDIR += chemps2 SUBDIR += chemtool SUBDIR += chemtool-devel SUBDIR += chrono SUBDIR += clhep SUBDIR += clipper SUBDIR += code_saturne SUBDIR += colt SUBDIR += coordgenlibs SUBDIR += coot SUBDIR += cp2k SUBDIR += crf++ SUBDIR += dalton SUBDIR += datawarrior SUBDIR += dcl SUBDIR += devisor SUBDIR += dft_tools SUBDIR += dftbplus SUBDIR += dkh SUBDIR += dlib-cpp SUBDIR += dlpoly-classic SUBDIR += drawxtl SUBDIR += eccodes SUBDIR += elk SUBDIR += epte SUBDIR += erd SUBDIR += erkale SUBDIR += esys-particle SUBDIR += fastcap SUBDIR += fasthenry SUBDIR += fisicalab SUBDIR += fleur SUBDIR += fsom SUBDIR += fvcom SUBDIR += fvcom-mpi SUBDIR += gabedit SUBDIR += gamess-us SUBDIR += gchemutils SUBDIR += gdma SUBDIR += getdp SUBDIR += ghemical SUBDIR += ghmm SUBDIR += gnudatalanguage SUBDIR += gpaw-setups SUBDIR += gramps SUBDIR += grib_api SUBDIR += gromacs SUBDIR += gsmc SUBDIR += gtamsanalyzer SUBDIR += gwyddion SUBDIR += h5utils + SUBDIR += h5z-zfp SUBDIR += harminv SUBDIR += hdf SUBDIR += hdf5 SUBDIR += hdf5-18 SUBDIR += hypre SUBDIR += iboview SUBDIR += isaac-cfd SUBDIR += jdftx SUBDIR += jstrack SUBDIR += kalzium SUBDIR += kalzium-kde4 SUBDIR += kst2 SUBDIR += lammps SUBDIR += lamprop SUBDIR += latte SUBDIR += libaec SUBDIR += libccp4 SUBDIR += libcint SUBDIR += libctl SUBDIR += libefp SUBDIR += libgeodecomp SUBDIR += libghemical SUBDIR += libgridxc SUBDIR += libint SUBDIR += libint2 SUBDIR += libkml SUBDIR += liblinear SUBDIR += libmsym SUBDIR += liboglappth SUBDIR += libquantum SUBDIR += libssm SUBDIR += libsvm SUBDIR += libsvm-python SUBDIR += libxc SUBDIR += liggghts SUBDIR += lm SUBDIR += luscus SUBDIR += madness SUBDIR += maeparser SUBDIR += massxpert SUBDIR += mbdyn SUBDIR += mcstas SUBDIR += mcstas-comps SUBDIR += mcxtrace SUBDIR += mcxtrace-comps SUBDIR += mdynamix SUBDIR += medit SUBDIR += meep SUBDIR += metaf2xml SUBDIR += metaphysicl SUBDIR += minc2 SUBDIR += mmdb2 SUBDIR += mmtf SUBDIR += mol2ps SUBDIR += molgif SUBDIR += molsketch SUBDIR += mpb SUBDIR += mpqc SUBDIR += msms SUBDIR += multiwfn SUBDIR += namd SUBDIR += netcdf SUBDIR += netcdf-cxx SUBDIR += netcdf-fortran SUBDIR += nifticlib SUBDIR += nwchem SUBDIR += octopus SUBDIR += openbabel SUBDIR += openkim SUBDIR += openmx SUBDIR += opensim-core SUBDIR += openstructure SUBDIR += p5-Algorithm-SVMLight SUBDIR += p5-Chemistry-3DBuilder SUBDIR += p5-Chemistry-Bond-Find SUBDIR += p5-Chemistry-Canonicalize SUBDIR += p5-Chemistry-Elements SUBDIR += p5-Chemistry-File-MDLMol SUBDIR += p5-Chemistry-File-Mopac SUBDIR += p5-Chemistry-File-PDB SUBDIR += p5-Chemistry-File-SLN SUBDIR += p5-Chemistry-File-SMARTS SUBDIR += p5-Chemistry-File-SMILES SUBDIR += p5-Chemistry-File-VRML SUBDIR += p5-Chemistry-File-XYZ SUBDIR += p5-Chemistry-FormulaPattern SUBDIR += p5-Chemistry-InternalCoords SUBDIR += p5-Chemistry-Isotope SUBDIR += p5-Chemistry-MacroMol SUBDIR += p5-Chemistry-MidasPattern SUBDIR += p5-Chemistry-Mok SUBDIR += p5-Chemistry-Mol SUBDIR += p5-Chemistry-Pattern SUBDIR += p5-Chemistry-Reaction SUBDIR += p5-Chemistry-Ring SUBDIR += p5-Geo-BUFR SUBDIR += p5-Geo-Coordinates-Converter SUBDIR += p5-Geo-Coordinates-Converter-iArea SUBDIR += p5-Geo-ReadGRIB SUBDIR += p5-Geo-WebService-Elevation-USGS SUBDIR += p5-Mcstas-Tools SUBDIR += p5-PerlMol SUBDIR += p5-Physics-Unit SUBDIR += paje SUBDIR += paraview SUBDIR += pcmsolver SUBDIR += pnetcdf SUBDIR += psychopy SUBDIR += pulseview SUBDIR += py-DendroPy SUBDIR += py-GPy SUBDIR += py-GPyOpt SUBDIR += py-PyFR SUBDIR += py-lifelines SUBDIR += py-MDAnalysis SUBDIR += py-MDAnalysisTests SUBDIR += py-OpenFermion SUBDIR += py-PyQuante SUBDIR += py-ScientificPython SUBDIR += py-SimpleSpectral SUBDIR += py-abipy SUBDIR += py-ase SUBDIR += py-avogadrolibs SUBDIR += py-cdo SUBDIR += py-chempy SUBDIR += py-coards SUBDIR += py-dlib SUBDIR += py-gpaw SUBDIR += py-gsd SUBDIR += py-h5py SUBDIR += py-hcluster SUBDIR += py-kinematics SUBDIR += py-mdp SUBDIR += py-mlpy SUBDIR += py-mmtf-python SUBDIR += py-molmod SUBDIR += py-netCDF4 SUBDIR += py-obspy SUBDIR += py-openpiv SUBDIR += py-paida SUBDIR += py-paramz SUBDIR += py-phono3py SUBDIR += py-phonopy SUBDIR += py-pupynere SUBDIR += py-pyaixi SUBDIR += py-pydicom SUBDIR += py-pygeodesy SUBDIR += py-pymatgen SUBDIR += py-pymol SUBDIR += py-pyosf SUBDIR += py-pysal SUBDIR += py-pyteomics SUBDIR += py-pyteomics.biolccc SUBDIR += py-qspin SUBDIR += py-quantities SUBDIR += py-rmf SUBDIR += py-scikit-fuzzy SUBDIR += py-scikit-learn SUBDIR += py-scikit-sparse SUBDIR += py-scimath SUBDIR += py-scipy SUBDIR += py-scoria SUBDIR += py-spglib SUBDIR += py-veusz SUBDIR += py-ws2300 SUBDIR += pybrain SUBDIR += pycdf SUBDIR += pynn SUBDIR += qbox SUBDIR += qcl SUBDIR += qmcpack SUBDIR += qtresistors SUBDIR += quantum-espresso SUBDIR += quantum-espresso-pseudopotentials SUBDIR += qwalk SUBDIR += rdkit SUBDIR += rmf SUBDIR += rubygem-ai4r SUBDIR += rubygem-cdo SUBDIR += rubygem-rgeo SUBDIR += rubygem-rgeo-geojson SUBDIR += rubygem-rgeo-proj4 SUBDIR += rubygem-rgeo-shapefile SUBDIR += rubygem-ruby-dcl SUBDIR += rubygem-ruby-netcdf SUBDIR += siesta SUBDIR += sigrok-cli SUBDIR += sigrok-firmware SUBDIR += sigrok-firmware-fx2lafw SUBDIR += sigrok-firmware-utils SUBDIR += silo SUBDIR += simbody SUBDIR += simint SUBDIR += simlib SUBDIR += simsmith SUBDIR += sparta SUBDIR += spglib SUBDIR += step SUBDIR += step-kde4 SUBDIR += svmlight SUBDIR += szip SUBDIR += teem SUBDIR += tfel SUBDIR += tinker SUBDIR += triqs SUBDIR += udunits SUBDIR += v_sim SUBDIR += vmd SUBDIR += voro++ SUBDIR += wannier90 SUBDIR += wxmacmolplt SUBDIR += xcrysden SUBDIR += xdrawchem SUBDIR += xfce4-equake-plugin SUBDIR += xmakemol SUBDIR += yoda .include Index: head/science/h5z-zfp/Makefile =================================================================== --- head/science/h5z-zfp/Makefile (nonexistent) +++ head/science/h5z-zfp/Makefile (revision 487783) @@ -0,0 +1,38 @@ +# $FreeBSD$ + +PORTNAME= h5z-zfp +DISTVERSIONPREFIX= v +DISTVERSION= 0.9.0 +CATEGORIES= science + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Registered ZFP compression plugin for HDF5 + +LICENSE= BSD3CLAUSE +LICENSE_FILE= ${WRKSRC}/LICENSE + +BUILD_DEPENDS= bash:shells/bash +LIB_DEPENDS= libhdf5.so:science/hdf5 \ + libzfp.so:devel/zfp + +USES= gmake localbase +USE_GITHUB= yes +GH_ACCOUNT= LLNL +GH_PROJECT= ${PORTNAME:tu} +USE_LDCONFIG= yes + +MAKE_ARGS= SHELL=${LOCALBASE}/bin/bash \ + HDF5_HOME=${STAGEDIR}${LOCALBASE} HDF5_LIB=${LOCALBASE}/lib \ + ZFP_HOME=${STAGEDIR}${LOCALBASE} ZFP_LIB=${LOCALBASE}/lib \ + PREPATH=-Wl,-rpath= SOEXT=so SHFLAG=-shared + +CFLAGS+= -fPIC + +PLIST_FILES= include/H5Zzfp.h \ + include/H5Zzfp_lib.h \ + include/H5Zzfp_plugin.h \ + include/H5Zzfp_props.h \ + lib/libh5zzfp.so \ + plugin/libh5zzfp.so + +.include Property changes on: head/science/h5z-zfp/Makefile ___________________________________________________________________ Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:keywords ## -0,0 +1 ## +FreeBSD=%H \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/science/h5z-zfp/distinfo =================================================================== --- head/science/h5z-zfp/distinfo (nonexistent) +++ head/science/h5z-zfp/distinfo (revision 487783) @@ -0,0 +1,3 @@ +TIMESTAMP = 1545184047 +SHA256 (LLNL-H5Z-ZFP-v0.9.0_GH0.tar.gz) = 91d566e2d0175c929f114ce100151478450cfedee2d15fc99eb61fd931d9f389 +SIZE (LLNL-H5Z-ZFP-v0.9.0_GH0.tar.gz) = 123091 Property changes on: head/science/h5z-zfp/distinfo ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/science/h5z-zfp/files/patch-src_Makefile =================================================================== --- head/science/h5z-zfp/files/patch-src_Makefile (nonexistent) +++ head/science/h5z-zfp/files/patch-src_Makefile (revision 487783) @@ -0,0 +1,49 @@ +--- src/Makefile.orig 2018-04-06 16:34:55 UTC ++++ src/Makefile +@@ -30,33 +30,33 @@ H5Zzfp_props_f.o H5Zzfp_props_f.mod: H5Z + $(FC) -c $< -o $@ $(FCFLAGS) -I$(H5Z_ZFP_BASE) -I$(ZFP_INC) -I$(HDF5_INC) + + # The filter member of the filter library +-libh5zzfp.a(H5Zzfp_lib.o): H5Zzfp_lib.o +- $(AR) cr libh5zzfp.a $< ++libh5zzfp-s.$(SOEXT)(H5Zzfp_lib.o): H5Zzfp_lib.o ++ $(CC) -shared -o libh5zzfp-s.$(SOEXT) $< + + # The C properties interface member of the filter library +-libh5zzfp.a(H5Zzfp_props.o): H5Zzfp_props.o +- $(AR) cr libh5zzfp.a $< ++libh5zzfp-s.$(SOEXT)(H5Zzfp_props.o): H5Zzfp_props.o ++ $(CC) -shared -o libh5zzfp-s.$(SOEXT) $< + + # The Fortran properties interface member of the filter library +-libh5zzfp.a(H5Zzfp_props_f.o): H5Zzfp_props_f.o +- $(AR) cr libh5zzfp.a $< ++libh5zzfp-s.$(SOEXT)(H5Zzfp_props_f.o): H5Zzfp_props_f.o ++ $(CC) -shared -o libh5zzfp-s.$(SOEXT) $< + + # Alias target for filter library, conditionally includes Fortran +-LIBOBJ = libh5zzfp.a(H5Zzfp_lib.o) libh5zzfp.a(H5Zzfp_props.o) ++LIBOBJ = libh5zzfp-s.$(SOEXT)(H5Zzfp_lib.o) libh5zzfp-s.$(SOEXT)(H5Zzfp_props.o) + ifneq ($(FC),) +-LIBOBJ += libh5zzfp.a(H5Zzfp_props_f.o) ++LIBOBJ += libh5zzfp-s.$(SOEXT)(H5Zzfp_props_f.o) + endif + lib: $(LIBOBJ) + + all: lib plugin + + install: all +- $(INSTALL) -d $(PREFIX)/{plugin,include,lib} +- $(INSTALL) plugin/libh5zzfp.$(SOEXT) $(PREFIX)/plugin +- $(INSTALL) libh5zzfp.a $(PREFIX)/lib +- $(INSTALL) -m 644 H5Zzfp.h H5Zzfp_lib.h H5Zzfp_plugin.h H5Zzfp_props.h $(PREFIX)/include ++ $(INSTALL) -d $(DESTDIR)$(PREFIX)/{plugin,include,lib} ++ $(INSTALL) plugin/libh5zzfp.$(SOEXT) $(DESTDIR)$(PREFIX)/plugin ++ $(INSTALL) libh5zzfp-s.$(SOEXT) $(DESTDIR)$(PREFIX)/lib/libh5zzfp.so ++ $(INSTALL) -m 644 H5Zzfp.h H5Zzfp_lib.h H5Zzfp_plugin.h H5Zzfp_props.h $(DESTDIR)$(PREFIX)/include + ifneq ($(FC),) +- $(INSTALL) -m 644 *.[mM][oO][dD] $(PREFIX)/include ++ $(INSTALL) -m 644 *.[mM][oO][dD] $(DESTDIR)$(PREFIX)/include + endif + + clean: Property changes on: head/science/h5z-zfp/files/patch-src_Makefile ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/science/h5z-zfp/pkg-descr =================================================================== --- head/science/h5z-zfp/pkg-descr (nonexistent) +++ head/science/h5z-zfp/pkg-descr (revision 487783) @@ -0,0 +1,10 @@ +H5Z-ZFP is a compression filter for HDF5 using the ZFP compression library, +supporting lossy compression of floating point and integer data to meet bitrate, +accuracy, and/or precision targets. The filter uses the registered HDF5 filter +ID, 32013. It supports single and double precision floating point and integer +data chunked in 1, 2 or 3 dimensions. The filter will function on datasets of +more than 3 dimensions, albiet at the probable expense of compression +performance, as long as the chunking is such that no more than 3 dimensions of a +chunk are non-unity. + +WWW: https://h5z-zfp.readthedocs.io/en/latest/ Property changes on: head/science/h5z-zfp/pkg-descr ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property