Index: head/math/Makefile =================================================================== --- head/math/Makefile (revision 487071) +++ head/math/Makefile (revision 487072) @@ -1,903 +1,904 @@ # $FreeBSD$ # COMMENT = Mathematics SUBDIR += 4ti2 SUBDIR += GiNaC SUBDIR += PDL SUBDIR += R SUBDIR += R-cran-Amelia SUBDIR += R-cran-CVST SUBDIR += R-cran-ChangeAnomalyDetection SUBDIR += R-cran-DEoptimR SUBDIR += R-cran-DRR SUBDIR += R-cran-DoE.base SUBDIR += R-cran-Formula SUBDIR += R-cran-KFAS SUBDIR += R-cran-LearnBayes SUBDIR += R-cran-MCMCpack SUBDIR += R-cran-MSwM SUBDIR += R-cran-MatchIt SUBDIR += R-cran-Matching SUBDIR += R-cran-MatrixModels SUBDIR += R-cran-NMF SUBDIR += R-cran-RHmm SUBDIR += R-cran-RSvgDevice SUBDIR += R-cran-RcppArmadillo SUBDIR += R-cran-RcppEigen SUBDIR += R-cran-RcppRoll SUBDIR += R-cran-Rmpfr SUBDIR += R-cran-Rsolnp SUBDIR += R-cran-SQUAREM SUBDIR += R-cran-SparseM SUBDIR += R-cran-VGAM SUBDIR += R-cran-Zelig SUBDIR += R-cran-assertthat SUBDIR += R-cran-backports SUBDIR += R-cran-bdsmatrix SUBDIR += R-cran-car SUBDIR += R-cran-carData SUBDIR += R-cran-coda SUBDIR += R-cran-combinat SUBDIR += R-cran-conf.design SUBDIR += R-cran-ddalpha SUBDIR += R-cran-deldir SUBDIR += R-cran-dimRed SUBDIR += R-cran-dlmodeler SUBDIR += R-cran-dplyr SUBDIR += R-cran-expm SUBDIR += R-cran-forcats SUBDIR += R-cran-forecast SUBDIR += R-cran-fracdiff SUBDIR += R-cran-geepack SUBDIR += R-cran-geometry SUBDIR += R-cran-gmp SUBDIR += R-cran-gower SUBDIR += R-cran-gpclib SUBDIR += R-cran-gss SUBDIR += R-cran-gtable SUBDIR += R-cran-haven SUBDIR += R-cran-igraph SUBDIR += R-cran-influenceR SUBDIR += R-cran-inline SUBDIR += R-cran-ipred SUBDIR += R-cran-irlba SUBDIR += R-cran-labeling SUBDIR += R-cran-lava SUBDIR += R-cran-lazyeval SUBDIR += R-cran-lme4 SUBDIR += R-cran-magic SUBDIR += R-cran-maxLik SUBDIR += R-cran-mcmc SUBDIR += R-cran-memisc SUBDIR += R-cran-minqa SUBDIR += R-cran-miscTools SUBDIR += R-cran-mvtnorm SUBDIR += R-cran-nloptr SUBDIR += R-cran-nnls SUBDIR += R-cran-nortest SUBDIR += R-cran-numDeriv SUBDIR += R-cran-numbers SUBDIR += R-cran-outliers SUBDIR += R-cran-partitions SUBDIR += R-cran-pbkrtest SUBDIR += R-cran-pls SUBDIR += R-cran-polynom SUBDIR += R-cran-prodlim SUBDIR += R-cran-psych SUBDIR += R-cran-quadprog SUBDIR += R-cran-qualityTools SUBDIR += R-cran-quantreg SUBDIR += R-cran-recipes SUBDIR += R-cran-rgenoud SUBDIR += R-cran-robustbase SUBDIR += R-cran-sandwich SUBDIR += R-cran-sf SUBDIR += R-cran-sm SUBDIR += R-cran-sp SUBDIR += R-cran-spData SUBDIR += R-cran-spdep SUBDIR += R-cran-sspir SUBDIR += R-cran-stabledist SUBDIR += R-cran-survey SUBDIR += R-cran-truncnorm SUBDIR += R-cran-units SUBDIR += R-cran-uroot SUBDIR += R-cran-xts SUBDIR += R-cran-zoo SUBDIR += SCIP SUBDIR += SoPlex SUBDIR += aamath SUBDIR += abakus SUBDIR += abs SUBDIR += acalc SUBDIR += add SUBDIR += adept SUBDIR += adol-c SUBDIR += algae SUBDIR += alglib SUBDIR += algotutor SUBDIR += alt-ergo SUBDIR += amath SUBDIR += ambit SUBDIR += analitza SUBDIR += analitza-kde4 SUBDIR += ann SUBDIR += antic SUBDIR += apc SUBDIR += arb SUBDIR += aribas SUBDIR += armadillo SUBDIR += arpack++ SUBDIR += arpack-ng SUBDIR += aspcud SUBDIR += asymptote SUBDIR += atlas SUBDIR += barvinok SUBDIR += biggles SUBDIR += blacs SUBDIR += blas SUBDIR += blaze SUBDIR += blazeiterative SUBDIR += blis SUBDIR += blitz++ SUBDIR += blocksolve95 SUBDIR += bsdnt SUBDIR += cadabra2 SUBDIR += calc SUBDIR += calcoo SUBDIR += calctool SUBDIR += cantor SUBDIR += cantor-kde4 SUBDIR += cbc SUBDIR += cblas SUBDIR += ccmath SUBDIR += cddlib SUBDIR += ceres-solver SUBDIR += cgal SUBDIR += cgl SUBDIR += chaco SUBDIR += chryzodus SUBDIR += clasp SUBDIR += clblas SUBDIR += clblast SUBDIR += clfft SUBDIR += cln SUBDIR += cloog SUBDIR += clp SUBDIR += clrng SUBDIR += cminpack SUBDIR += cmlib SUBDIR += coinmp SUBDIR += concorde SUBDIR += convertall SUBDIR += coq SUBDIR += crlibm SUBDIR += cryptominisat SUBDIR += cvc3 SUBDIR += cvc4 SUBDIR += dbcsr SUBDIR += deal.ii SUBDIR += diehard SUBDIR += dieharder SUBDIR += djbfft SUBDIR += drgeo SUBDIR += dsdp SUBDIR += dynare SUBDIR += e SUBDIR += ecos SUBDIR += edenmath SUBDIR += eigen2 SUBDIR += eigen3 SUBDIR += eispack SUBDIR += elpa SUBDIR += emc2 SUBDIR += ent SUBDIR += entropy SUBDIR += eprover SUBDIR += ess SUBDIR += eukleides SUBDIR += eval SUBDIR += facile SUBDIR += fann SUBDIR += fcl SUBDIR += fflas-ffpack SUBDIR += fftw SUBDIR += fftw-float SUBDIR += fftw3 SUBDIR += fftw3-float SUBDIR += fftw3-long SUBDIR += fftw3-quad SUBDIR += fityk SUBDIR += flann SUBDIR += flint2 SUBDIR += flintqs SUBDIR += form SUBDIR += fpc-fftw SUBDIR += fpc-gmp SUBDIR += fpc-numlib SUBDIR += fplll SUBDIR += fricas SUBDIR += fxt SUBDIR += g2o SUBDIR += galculator SUBDIR += gambit SUBDIR += gap SUBDIR += gau2grid SUBDIR += gdcalc SUBDIR += geg SUBDIR += geogebra + SUBDIR += geogram SUBDIR += geonext SUBDIR += gexpr SUBDIR += ggobi SUBDIR += giacxcas SUBDIR += givaro SUBDIR += gkmap SUBDIR += glgraph SUBDIR += glm SUBDIR += glpk SUBDIR += glucose SUBDIR += gmm++ SUBDIR += gmp SUBDIR += gmp-ecm SUBDIR += gnome-calculator SUBDIR += gnubc SUBDIR += gnumeric SUBDIR += gnuplot SUBDIR += gnuplot-lite SUBDIR += gnuplot-tex-extras SUBDIR += goblin SUBDIR += gotoblas SUBDIR += grace SUBDIR += gracetmpl SUBDIR += graphthing SUBDIR += gretl SUBDIR += gri SUBDIR += gringo SUBDIR += grpn SUBDIR += gsl SUBDIR += hexcalc SUBDIR += hs-Agda SUBDIR += hs-Agda-stdlib SUBDIR += hs-NumInstances SUBDIR += hs-adjunctions SUBDIR += hs-categories SUBDIR += hs-comonad SUBDIR += hs-contravariant SUBDIR += hs-data-lens SUBDIR += hs-data-lens-template SUBDIR += hs-distributive SUBDIR += hs-erf SUBDIR += hs-fixed SUBDIR += hs-half SUBDIR += hs-ieee754 SUBDIR += hs-integer-logarithms SUBDIR += hs-kan-extensions SUBDIR += hs-math-functions SUBDIR += hs-mwc-random SUBDIR += hs-pointed SUBDIR += hs-probability SUBDIR += hs-semigroupoids SUBDIR += hs-semigroups SUBDIR += hs-statistics SUBDIR += hs-vector-space SUBDIR += igraph SUBDIR += ignition-math SUBDIR += intervaltree SUBDIR += ipopt SUBDIR += ised SUBDIR += jacal SUBDIR += jags SUBDIR += jakarta-commons-math3 SUBDIR += jama SUBDIR += jeuclid SUBDIR += jlatexmath SUBDIR += jsmath-fonts SUBDIR += jtransforms SUBDIR += jts SUBDIR += kalgebra SUBDIR += kalgebra-kde4 SUBDIR += kbruch SUBDIR += kbruch-kde4 SUBDIR += kcalc SUBDIR += kcalc-kde4 SUBDIR += kig SUBDIR += kig-kde4 SUBDIR += kktdirect SUBDIR += kmplot SUBDIR += kmplot-kde4 SUBDIR += labplot SUBDIR += latte-integrale SUBDIR += lambda SUBDIR += lapack SUBDIR += lapack++ SUBDIR += lapack95 SUBDIR += lapacke SUBDIR += laspack SUBDIR += ldouble SUBDIR += lean SUBDIR += levmar SUBDIR += libRmath SUBDIR += libccd SUBDIR += libflame SUBDIR += liblbfgs SUBDIR += libmesh SUBDIR += libmissing SUBDIR += libocas SUBDIR += liborigin SUBDIR += libpgmath SUBDIR += libpoly SUBDIR += libqalculate SUBDIR += libranlip SUBDIR += librsb SUBDIR += libtommath SUBDIR += libtsnnls SUBDIR += libxls SUBDIR += libxlsxwriter SUBDIR += libxsmm SUBDIR += lidia SUBDIR += linpack SUBDIR += lll_spect SUBDIR += lp_solve SUBDIR += lrng SUBDIR += lrslib SUBDIR += ltl SUBDIR += ltl2ba SUBDIR += lybniz SUBDIR += mate-calc SUBDIR += math77 SUBDIR += mathgl SUBDIR += mathmod SUBDIR += mathomatic SUBDIR += matio SUBDIR += matlab-installer SUBDIR += maxima SUBDIR += mbasecalc SUBDIR += metis SUBDIR += metis-edf SUBDIR += metis4 SUBDIR += mfem SUBDIR += mingw32-libgmp SUBDIR += minisat SUBDIR += miracl SUBDIR += mkl-dnn SUBDIR += mlpack SUBDIR += moab SUBDIR += moo SUBDIR += mosesdecoder SUBDIR += mpc SUBDIR += mpexpr SUBDIR += mpfr SUBDIR += mpir SUBDIR += mppp SUBDIR += mprime SUBDIR += msieve SUBDIR += mtrxmath SUBDIR += multichoose SUBDIR += mumps SUBDIR += mumps-edf SUBDIR += mumps-mpich SUBDIR += muparser SUBDIR += nanoflann SUBDIR += naturalmath SUBDIR += nauty SUBDIR += ndiff SUBDIR += newmat SUBDIR += nfft SUBDIR += ngraph SUBDIR += nlopt SUBDIR += ntl SUBDIR += numdiff SUBDIR += nyh-hoc SUBDIR += ocaml-ocamlgraph SUBDIR += ocaml-zarith SUBDIR += ocamlgsl SUBDIR += octave SUBDIR += octave-forge SUBDIR += octave-forge-actuarial SUBDIR += octave-forge-audio SUBDIR += octave-forge-base SUBDIR += octave-forge-bim SUBDIR += octave-forge-bioinfo SUBDIR += octave-forge-bsltl SUBDIR += octave-forge-cgi SUBDIR += octave-forge-civil-engineering SUBDIR += octave-forge-control SUBDIR += octave-forge-data-smoothing SUBDIR += octave-forge-database SUBDIR += octave-forge-dataframe SUBDIR += octave-forge-dicom SUBDIR += octave-forge-divand SUBDIR += octave-forge-doctest SUBDIR += octave-forge-econometrics SUBDIR += octave-forge-engine SUBDIR += octave-forge-fenv SUBDIR += octave-forge-financial SUBDIR += octave-forge-fits SUBDIR += octave-forge-fl-core SUBDIR += octave-forge-fpl SUBDIR += octave-forge-fuzzy-logic-toolkit SUBDIR += octave-forge-ga SUBDIR += octave-forge-general SUBDIR += octave-forge-generate_html SUBDIR += octave-forge-geometry SUBDIR += octave-forge-gnuplot SUBDIR += octave-forge-gsl SUBDIR += octave-forge-ident SUBDIR += octave-forge-image SUBDIR += octave-forge-informationtheory SUBDIR += octave-forge-integration SUBDIR += octave-forge-interval SUBDIR += octave-forge-io SUBDIR += octave-forge-irsa SUBDIR += octave-forge-level-set SUBDIR += octave-forge-linear-algebra SUBDIR += octave-forge-lssa SUBDIR += octave-forge-ltfat SUBDIR += octave-forge-mapping SUBDIR += octave-forge-mechanics SUBDIR += octave-forge-miscellaneous SUBDIR += octave-forge-missing-functions SUBDIR += octave-forge-msh SUBDIR += octave-forge-multicore SUBDIR += octave-forge-mvn SUBDIR += octave-forge-nan SUBDIR += octave-forge-ncarray SUBDIR += octave-forge-netcdf SUBDIR += octave-forge-nlwing2 SUBDIR += octave-forge-nnet SUBDIR += octave-forge-nurbs SUBDIR += octave-forge-oct2mat SUBDIR += octave-forge-octclip SUBDIR += octave-forge-octproj SUBDIR += octave-forge-odebvp SUBDIR += octave-forge-optics SUBDIR += octave-forge-optim SUBDIR += octave-forge-optiminterp SUBDIR += octave-forge-outliers SUBDIR += octave-forge-parallel SUBDIR += octave-forge-pdb SUBDIR += octave-forge-plot SUBDIR += octave-forge-quaternion SUBDIR += octave-forge-queueing SUBDIR += octave-forge-secs1d SUBDIR += octave-forge-secs2d SUBDIR += octave-forge-secs3d SUBDIR += octave-forge-signal SUBDIR += octave-forge-simp SUBDIR += octave-forge-sockets SUBDIR += octave-forge-sparsersb SUBDIR += octave-forge-specfun SUBDIR += octave-forge-special-matrix SUBDIR += octave-forge-splines SUBDIR += octave-forge-statistics SUBDIR += octave-forge-stk SUBDIR += octave-forge-strings SUBDIR += octave-forge-struct SUBDIR += octave-forge-symband SUBDIR += octave-forge-symbolic SUBDIR += octave-forge-tcl-octave SUBDIR += octave-forge-tisean SUBDIR += octave-forge-tsa SUBDIR += octave-forge-video SUBDIR += octave-forge-zenity SUBDIR += octave-forge-zeromq SUBDIR += octomap SUBDIR += ogdf SUBDIR += oleo SUBDIR += openblas SUBDIR += openfst SUBDIR += openlibm SUBDIR += openmesh SUBDIR += opensolaris-libm SUBDIR += orpie SUBDIR += osqp SUBDIR += p5-AI-DecisionTree SUBDIR += p5-AI-Genetic SUBDIR += p5-AI-NeuralNet-BackProp SUBDIR += p5-AI-Perceptron SUBDIR += p5-Algorithm-Combinatorics SUBDIR += p5-Algorithm-CurveFit SUBDIR += p5-Algorithm-KMeans SUBDIR += p5-Algorithm-Munkres SUBDIR += p5-Bit-ShiftReg SUBDIR += p5-Bit-Vector SUBDIR += p5-Bit-Vector-Minimal SUBDIR += p5-CAD-Calc SUBDIR += p5-Chart-Math-Axis SUBDIR += p5-Data-Float SUBDIR += p5-Date-Handler SUBDIR += p5-GIS-Distance SUBDIR += p5-GIS-Distance-Fast SUBDIR += p5-GIS-Distance-Lite SUBDIR += p5-Geo-Coordinates-UTM SUBDIR += p5-Geo-Distance SUBDIR += p5-Geo-Distance-XS SUBDIR += p5-Graph SUBDIR += p5-Math-Algebra-Symbols SUBDIR += p5-Math-Base36 SUBDIR += p5-Math-Base85 SUBDIR += p5-Math-BaseCalc SUBDIR += p5-Math-BaseCnv SUBDIR += p5-Math-Bezier SUBDIR += p5-Math-Bezier-Convert SUBDIR += p5-Math-BigInt SUBDIR += p5-Math-BigInt-FastCalc SUBDIR += p5-Math-BigInt-GMP SUBDIR += p5-Math-BigInt-Lite SUBDIR += p5-Math-BigInt-Pari SUBDIR += p5-Math-BigRat SUBDIR += p5-Math-CDF SUBDIR += p5-Math-Calc-Units SUBDIR += p5-Math-Cephes SUBDIR += p5-Math-Combinatorics SUBDIR += p5-Math-Complex SUBDIR += p5-Math-ConvexHull SUBDIR += p5-Math-Currency SUBDIR += p5-Math-Derivative SUBDIR += p5-Math-Evol SUBDIR += p5-Math-Expr SUBDIR += p5-Math-FFT SUBDIR += p5-Math-FixedPrecision SUBDIR += p5-Math-Fleximal SUBDIR += p5-Math-GMP SUBDIR += p5-Math-GMPf SUBDIR += p5-Math-GMPq SUBDIR += p5-Math-GMPz SUBDIR += p5-Math-GSL SUBDIR += p5-Math-Geometry SUBDIR += p5-Math-Geometry-Planar SUBDIR += p5-Math-Geometry-Planar-GPC SUBDIR += p5-Math-Geometry-Planar-GPC-PolygonXS SUBDIR += p5-Math-Geometry-Planar-Offset SUBDIR += p5-Math-Geometry-Voronoi SUBDIR += p5-Math-Gradient SUBDIR += p5-Math-Int128 SUBDIR += p5-Math-Int64 SUBDIR += p5-Math-Interpolate SUBDIR += p5-Math-Intersection-StraightLine SUBDIR += p5-Math-Logic SUBDIR += p5-Math-MPC SUBDIR += p5-Math-MPFR SUBDIR += p5-Math-Matrix SUBDIR += p5-Math-MatrixReal SUBDIR += p5-Math-NumberCruncher SUBDIR += p5-Math-Pari SUBDIR += p5-Math-Polygon SUBDIR += p5-Math-Polygon-Tree SUBDIR += p5-Math-Polynomial-Solve SUBDIR += p5-Math-Prime-Util SUBDIR += p5-Math-Prime-Util-GMP SUBDIR += p5-Math-Prime-XS SUBDIR += p5-Math-ProvablePrime SUBDIR += p5-Math-RPN SUBDIR += p5-Math-Random SUBDIR += p5-Math-Random-ISAAC SUBDIR += p5-Math-Random-ISAAC-XS SUBDIR += p5-Math-Random-MT SUBDIR += p5-Math-Random-MT-Auto SUBDIR += p5-Math-Random-OO SUBDIR += p5-Math-Random-Secure SUBDIR += p5-Math-RandomOrg SUBDIR += p5-Math-Round SUBDIR += p5-Math-Round-Var SUBDIR += p5-Math-Sequence SUBDIR += p5-Math-Series SUBDIR += p5-Math-SigFigs SUBDIR += p5-Math-SimpleVariable SUBDIR += p5-Math-Spline SUBDIR += p5-Math-String SUBDIR += p5-Math-Symbolic SUBDIR += p5-Math-Symbolic-Custom-CCompiler SUBDIR += p5-Math-Symbolic-Custom-Contains SUBDIR += p5-Math-Symbolic-Custom-ErrorPropagation SUBDIR += p5-Math-Symbolic-Custom-LaTeXDumper SUBDIR += p5-Math-Symbolic-Custom-Pattern SUBDIR += p5-Math-Symbolic-Custom-Simplification SUBDIR += p5-Math-Symbolic-Custom-Transformation SUBDIR += p5-Math-SymbolicX-BigNum SUBDIR += p5-Math-SymbolicX-Complex SUBDIR += p5-Math-SymbolicX-Error SUBDIR += p5-Math-SymbolicX-Inline SUBDIR += p5-Math-SymbolicX-NoSimplification SUBDIR += p5-Math-SymbolicX-ParserExtensionFactory SUBDIR += p5-Math-SymbolicX-Statistics-Distributions SUBDIR += p5-Math-TrulyRandom SUBDIR += p5-Math-Units SUBDIR += p5-Math-Utils SUBDIR += p5-Math-Vec SUBDIR += p5-Math-VecStat SUBDIR += p5-Math-VectorReal SUBDIR += p5-NetCDF SUBDIR += p5-Number-Compare SUBDIR += p5-Number-Fraction SUBDIR += p5-Number-Misc SUBDIR += p5-Number-Uncertainty SUBDIR += p5-Number-WithError SUBDIR += p5-Number-WithError-LaTeX SUBDIR += p5-Parse-Range SUBDIR += p5-Roman SUBDIR += p5-Set-IntSpan SUBDIR += p5-Set-IntSpan-Fast SUBDIR += p5-Set-IntSpan-Fast-XS SUBDIR += p5-Set-Partition SUBDIR += p5-Set-Window SUBDIR += p5-Statistics-Basic SUBDIR += p5-Statistics-Benford SUBDIR += p5-Statistics-CaseResampling SUBDIR += p5-Statistics-ChiSquare SUBDIR += p5-Statistics-Contingency SUBDIR += p5-Statistics-Descriptive SUBDIR += p5-Statistics-Descriptive-Discrete SUBDIR += p5-Statistics-Distributions SUBDIR += p5-Statistics-Forecast SUBDIR += p5-Statistics-Frequency SUBDIR += p5-Statistics-LTU SUBDIR += p5-Statistics-LineFit SUBDIR += p5-Statistics-Lite SUBDIR += p5-Statistics-OLS SUBDIR += p5-Statistics-R SUBDIR += p5-Statistics-Regression SUBDIR += p5-Statistics-TTest SUBDIR += p5-Task-Math-Symbolic SUBDIR += p5-Text-AsciiTeX SUBDIR += p5-bignum SUBDIR += pantheon-calculator SUBDIR += pari SUBDIR += parmetis SUBDIR += parmgridgen SUBDIR += pdal SUBDIR += pear-Math_BigInteger SUBDIR += pear-Math_Combinatorics SUBDIR += pecl-big_int SUBDIR += pecl-bitset SUBDIR += pecl-bitset2 SUBDIR += pecl-stats SUBDIR += pecl-stats2 SUBDIR += pecl-trader SUBDIR += petiga SUBDIR += php56-bcmath SUBDIR += php56-gmp SUBDIR += php71-bcmath SUBDIR += php71-gmp SUBDIR += php72-bcmath SUBDIR += php72-gmp SUBDIR += php73-bcmath SUBDIR += php73-gmp SUBDIR += physcalc SUBDIR += picosat SUBDIR += piranha SUBDIR += plman SUBDIR += ploticus SUBDIR += ploticus-nox11 SUBDIR += plplot SUBDIR += plplot-ada SUBDIR += polylib SUBDIR += primegen SUBDIR += primme SUBDIR += prng SUBDIR += proofgeneral SUBDIR += pspp SUBDIR += pure-mpfr SUBDIR += pure-rational SUBDIR += py-CyLP SUBDIR += py-Diofant SUBDIR += py-GridDataFormats SUBDIR += py-PuLP SUBDIR += py-PyMetis SUBDIR += py-PySCIPOpt SUBDIR += py-PyWavelets SUBDIR += py-Pyomo SUBDIR += py-algopy SUBDIR += py-altgraph SUBDIR += py-apgl SUBDIR += py-basemap SUBDIR += py-basemap-data SUBDIR += py-bitmath SUBDIR += py-bitvector SUBDIR += py-bottleneck SUBDIR += py-cdecimal SUBDIR += py-chaospy SUBDIR += py-colormath SUBDIR += py-cryptominisat SUBDIR += py-cvxopt SUBDIR += py-cvxpy SUBDIR += py-cyipopt SUBDIR += py-deap SUBDIR += py-ecos SUBDIR += py-fastcluster SUBDIR += py-fastdtw SUBDIR += py-ffc SUBDIR += py-fiat SUBDIR += py-fpconst SUBDIR += py-gato SUBDIR += py-gau2grid SUBDIR += py-gimmik SUBDIR += py-gmpy SUBDIR += py-gmpy2 SUBDIR += py-gnuplot SUBDIR += py-graphillion SUBDIR += py-igakit SUBDIR += py-igraph SUBDIR += py-intspan SUBDIR += py-keras SUBDIR += py-levmar SUBDIR += py-libpoly SUBDIR += py-luminol SUBDIR += py-mathdom SUBDIR += py-matplotlib SUBDIR += py-mpmath SUBDIR += py-munkres SUBDIR += py-networkx SUBDIR += py-numarray SUBDIR += py-numeric SUBDIR += py-numexpr SUBDIR += py-numpy SUBDIR += py-nzmath SUBDIR += py-osqp SUBDIR += py-pandas SUBDIR += py-pandas-datareader SUBDIR += py-patsy SUBDIR += py-permutation SUBDIR += py-petsc4py SUBDIR += py-piranha SUBDIR += py-plastex SUBDIR += py-primme SUBDIR += py-probstat SUBDIR += py-pyFFTW SUBDIR += py-pyasp SUBDIR += py-pybloom SUBDIR += py-pycosat SUBDIR += py-pygsl SUBDIR += py-pygslodeiv2 SUBDIR += py-pyhull SUBDIR += py-pyipopt SUBDIR += py-pymc SUBDIR += py-pymc3 SUBDIR += py-pyneqsys SUBDIR += py-pynleq2 SUBDIR += py-pyodeint SUBDIR += py-pyodesys SUBDIR += py-pysparse SUBDIR += py-pysym SUBDIR += py-python-louvain SUBDIR += py-pyvtk SUBDIR += py-random2 SUBDIR += py-rapi SUBDIR += py-roman SUBDIR += py-rpy2 SUBDIR += py-scientific SUBDIR += py-scikit-umfpack SUBDIR += py-scs SUBDIR += py-seaborn SUBDIR += py-secp256k1 SUBDIR += py-simhash SUBDIR += py-slepc4py SUBDIR += py-spectral SUBDIR += py-spot SUBDIR += py-statsmodels SUBDIR += py-svgmath SUBDIR += py-sym SUBDIR += py-symcxx SUBDIR += py-symeig SUBDIR += py-sympy SUBDIR += py-theano SUBDIR += py-ufl SUBDIR += py-uncertainties SUBDIR += py-vincenty SUBDIR += py-viper SUBDIR += py-yt SUBDIR += py-z3-solver SUBDIR += qalculate SUBDIR += qd SUBDIR += qhull SUBDIR += qhull5 SUBDIR += qrupdate SUBDIR += qtiplot SUBDIR += qtiplot-doc SUBDIR += qtoctave SUBDIR += qwtplot3d SUBDIR += qwtplot3d-qt4 SUBDIR += randlib SUBDIR += rapid SUBDIR += reduce SUBDIR += reduce-psl SUBDIR += reed-solomon SUBDIR += rexx-regmath SUBDIR += rkward-kde SUBDIR += rngstreams SUBDIR += rocs SUBDIR += rocs-kde4 SUBDIR += rpcalc SUBDIR += rpy SUBDIR += rubygem-algebra SUBDIR += rubygem-expression_parser SUBDIR += rubygem-fftw3 SUBDIR += rubygem-mathn SUBDIR += rubygem-narray SUBDIR += rubygem-narray_miss SUBDIR += rubygem-numru-misc SUBDIR += rubygem-numru-units SUBDIR += rubygem-rb-gsl SUBDIR += saga SUBDIR += sage SUBDIR += sc SUBDIR += sc-im SUBDIR += scalapack SUBDIR += scilab SUBDIR += scilab-toolbox-swt SUBDIR += scs SUBDIR += sdpa SUBDIR += sdpara SUBDIR += secp256k1 SUBDIR += sfft SUBDIR += sfst SUBDIR += simd-viterbi SUBDIR += singular SUBDIR += slatec SUBDIR += sleef SUBDIR += slepc SUBDIR += slgrace SUBDIR += snns SUBDIR += solitaire SUBDIR += sound-of-sorting SUBDIR += spar SUBDIR += spblas SUBDIR += spectra SUBDIR += speedcrunch SUBDIR += spooles SUBDIR += spooles-mpich SUBDIR += spot SUBDIR += stp SUBDIR += suitesparse SUBDIR += sundials SUBDIR += superlu SUBDIR += superlu_mt SUBDIR += surf SUBDIR += symmetrica SUBDIR += tablix SUBDIR += taucs SUBDIR += tblis SUBDIR += testu01 SUBDIR += tetgen SUBDIR += timbl SUBDIR += tmv SUBDIR += tomsfastmath SUBDIR += topaz SUBDIR += topcom SUBDIR += triangle SUBDIR += trlan SUBDIR += truthtable SUBDIR += tvmet SUBDIR += ump SUBDIR += units SUBDIR += unuran SUBDIR += viennacl SUBDIR += visualpolylib SUBDIR += vowpal_wabbit SUBDIR += vtk6 SUBDIR += vtk8 SUBDIR += wcalc SUBDIR += wfmath SUBDIR += why3 SUBDIR += wingz3 SUBDIR += wxMaxima SUBDIR += x12arima SUBDIR += xblas SUBDIR += xfce4-calculator-plugin SUBDIR += xgraph SUBDIR += xlapack SUBDIR += xldlas SUBDIR += xlife++ SUBDIR += xplot SUBDIR += xppaut SUBDIR += xspread SUBDIR += xtensor SUBDIR += yacas SUBDIR += yices SUBDIR += z3 SUBDIR += zegrapher SUBDIR += zimpl .include Index: head/math/geogram/Makefile =================================================================== --- head/math/geogram/Makefile (nonexistent) +++ head/math/geogram/Makefile (revision 487072) @@ -0,0 +1,30 @@ +# $FreeBSD$ + +PORTNAME= geogram +DISTVERSION= 1.6.9 +CATEGORIES= math +MASTER_SITES= https://gforge.inria.fr/frs/download.php/file/37779/ +DISTNAME= ${PORTNAME}_${DISTVERSION} + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Programming library of geometric algorithms + +LICENSE= BSD3CLAUSE +LICENSE_FILE= ${WRKSRC}/doc/devkit/license.dox + +LIB_DEPENDS= libglfw.so:graphics/glfw + +USES= cmake:outsource gl localbase:ldflags +USE_XORG= x11 xcursor xi xinerama xrandr xxf86vm +USE_GL= gl glu + +CMAKE_ON= GEOGRAM_USE_SYSTEM_GLFW3 +CMAKE_ARGS= -DVORPALINE_PLATFORM:STRING=FreeBSD +LDFLAGS+= -pthread + +post-stage: + @${RMDIR} ${STAGEDIR}${PREFIX}/include/geogram1/geogram_gfx/glup_viewer/colormaps + +# geogram installs static libraries. I couldn't make it build with shared libraries due to link errors. I asked Bruno.Levy@inria.fr to fix this (via e-mail). + +.include Property changes on: head/math/geogram/Makefile ___________________________________________________________________ Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:keywords ## -0,0 +1 ## +FreeBSD=%H \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/math/geogram/distinfo =================================================================== --- head/math/geogram/distinfo (nonexistent) +++ head/math/geogram/distinfo (revision 487072) @@ -0,0 +1,3 @@ +TIMESTAMP = 1544334501 +SHA256 (geogram_1.6.9.tar.gz) = 762ce1320cb30220f451418126aeb17c72cb0470f8730a30e565a0a52a05e7f9 +SIZE (geogram_1.6.9.tar.gz) = 8204635 Property changes on: head/math/geogram/distinfo ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/math/geogram/files/patch-CMakeLists.txt =================================================================== --- head/math/geogram/files/patch-CMakeLists.txt (nonexistent) +++ head/math/geogram/files/patch-CMakeLists.txt (revision 487072) @@ -0,0 +1,11 @@ +--- CMakeLists.txt.orig 2018-12-09 18:48:27 UTC ++++ CMakeLists.txt +@@ -132,7 +132,7 @@ if(NOT GEOGRAM_LIB_ONLY) + add_subdirectory(tests) + endif() + +-add_subdirectory(doc) ++#add_subdirectory(doc) + + ############################################################################## + # Cleanup from previous builds Property changes on: head/math/geogram/files/patch-CMakeLists.txt ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/math/geogram/files/patch-cmake_platforms_FreeBSD-clang.cmake =================================================================== --- head/math/geogram/files/patch-cmake_platforms_FreeBSD-clang.cmake (nonexistent) +++ head/math/geogram/files/patch-cmake_platforms_FreeBSD-clang.cmake (revision 487072) @@ -0,0 +1,156 @@ +--- cmake/platforms/FreeBSD-clang.cmake.orig 2018-12-09 17:28:39 UTC ++++ cmake/platforms/FreeBSD-clang.cmake +@@ -0,0 +1,153 @@ ++### ++### Adopted from cmake/platforms/Linux-clang.cmake ++### ++ ++#------------------------------------------------------------------- ++# Flags common to all FreeBSD based platforms with Clang compiler ++#------------------------------------------------------------------- ++ ++include(${GEOGRAM_SOURCE_DIR}/cmake/platforms/FreeBSD.cmake) ++ ++# Warning flags ++set(NORMAL_WARNINGS -Wall -Wextra) ++ ++set(FULL_WARNINGS ++ -Weverything ++ -Wno-padded # Disable generating a message each time padding is used ++ -Wno-float-equal # Sometimes we compare floats (against 0.0 or 1.0 mainly) ++ -Wno-global-constructors ++ -Wno-exit-time-destructors ++ -Wno-old-style-cast # Yes, old-style cast is sometime more legible... ++ -Wno-format-nonliteral # Todo: use Laurent Alonso's trick ++ -Wno-disabled-macro-expansion # Else it complains with stderr ++) ++ ++# Compile with full warnings by default ++add_definitions(${FULL_WARNINGS}) ++ ++# Run the static analyzer ++if(VORPALINE_WITH_CLANGSA) ++ add_definitions(--analyze) ++endif() ++ ++# I do not know where this -Wno-maybe-uninitialized comes from ++# (but clang does not understand it), silence the warning for ++# now... ++add_flags(CMAKE_CXX_FLAGS -Wno-unknown-warning-option) ++add_flags(CMAKE_C_FLAGS -Wno-unknown-warning-option) ++ ++# Add static and dynamic bounds checks (optimization required) ++#add_flags(CMAKE_CXX_FLAGS_RELEASE -D_FORTIFY_SOURCE=2) ++#add_flags(CMAKE_C_FLAGS_RELEASE -D_FORTIFY_SOURCE=2) ++ ++# Enable SSE3 instruction set ++add_flags(CMAKE_CXX_FLAGS -msse3) ++add_flags(CMAKE_C_FLAGS -msse3) ++ ++# C++11 standard ++add_flags(CMAKE_CXX_FLAGS -Qunused-arguments -std=c++11 -Wno-c++98-compat) ++ ++# Enable glibc parallel mode ++#add_flags(CMAKE_CXX_FLAGS -D_GLIBCXX_PARALLEL) ++ ++ ++# Generate debug information even in release mode ++#add_flags(CMAKE_CXX_FLAGS_RELEASE -g) ++#add_flags(CMAKE_C_FLAGS_RELEASE -g) ++ ++ ++# Additional debug flags ++# deactivated for now: I added bound checking in VOR::vector<>. ++#add_flags(CMAKE_CXX_FLAGS_DEBUG -D_GLIBCXX_DEBUG) ++ ++ ++# Compile and link with OpenMP ** NOT YET SUPPORTED in clang 3 ** ++#add_flags(CMAKE_CXX_FLAGS -fopenmp) ++#add_flags(CMAKE_C_FLAGS -fopenmp) ++ ++ ++# Profiler compilation flags ++if(VORPALINE_WITH_GPROF) ++ message(FATAL_ERROR "Profiling is not (yet) available with clang") ++ message(STATUS "Building for code profiling") ++ #add_flags(CMAKE_CXX_FLAGS -pg -DPROFILER) ++ #add_flags(CMAKE_C_FLAGS -pg -DPROFILER) ++endif() ++ ++ ++# Code coverage compilation flags ++if(VORPALINE_WITH_GCOV) ++ message(STATUS "Building for coverage analysis") ++ add_flags(CMAKE_CXX_FLAGS --coverage) ++ add_flags(CMAKE_C_FLAGS --coverage) ++endif() ++ ++ ++# Compilation flags for Google's AddressSanitizer ++# These flags can only be specified for dynamic builds ++if(VORPALINE_WITH_ASAN) ++ if(VORPALINE_BUILD_DYNAMIC) ++ message(STATUS "Building with AddressSanitizer (debug only)") ++ add_flags(CMAKE_CXX_FLAGS_DEBUG -fsanitize=address -fno-omit-frame-pointer) ++ add_flags(CMAKE_C_FLAGS_DEBUG -fsanitize=address -fno-omit-frame-pointer) ++ else() ++ message(WARNING "AddressSanitizer can be used with dynamic builds only") ++ set(VORPALINE_WITH_ASAN false) ++ endif() ++endif() ++if(NOT VORPALINE_WITH_ASAN) ++ # Use native GCC stack smash Protection and buffer overflow detection (debug only) ++ add_flags(CMAKE_CXX_FLAGS_DEBUG -fstack-protector-all) ++ add_flags(CMAKE_C_FLAGS_DEBUG -fstack-protector-all) ++endif() ++ ++ ++# Compilation flags for Google's ThreadSanitizer ++# Does not work for the moment: cannot figure out how to link with library libtsan ++if(VORPALINE_WITH_TSAN) ++ message(STATUS "Building with ThreadSanitizer (debug only)") ++ message(FATAL_ERROR "ThreadSanitizer is not available: cannot figure out how to link with library libtsan") ++ add_flags(CMAKE_CXX_FLAGS_DEBUG -fsanitize=thread) ++ add_flags(CMAKE_C_FLAGS_DEBUG -fsanitize=thread) ++ if(NOT VORPALINE_BUILD_DYNAMIC) ++ add_flags(CMAKE_EXE_LINKER_FLAGS -static-libtsan) ++ endif() ++endif() ++ ++ ++# Reset the warning level for third parties ++function(vor_reset_warning_level) ++ remove_definitions(${FULL_WARNINGS}) ++ add_definitions(${NORMAL_WARNINGS}) ++endfunction() ++ ++macro(vor_add_executable) ++ if(NOT VORPALINE_BUILD_DYNAMIC) ++ # Create a statically linked executable ++ # Link with static libraries ++ add_flags(CMAKE_CXX_FLAGS -static) ++ add_flags(CMAKE_C_FLAGS -static) ++ endif() ++ ++ add_executable(${ARGN}) ++ ++ if(NOT VORPALINE_BUILD_DYNAMIC AND DEFINED VORPALINE_WITH_DDT) ++ # Static builds running with Allinea's DDT must be linked with a ++ # special malloc library which replaces the malloc primitives of ++ # the Glibc (We must allow multiple definitions) ++ add_flags(CMAKE_EXE_LINKER_FLAGS -Wl,--allow-multiple-definition) ++ ++ if(VORPALINE_ARCH_64) ++ link_directories(${VORPALINE_WITH_DDT}/lib/64) ++ else() ++ link_directories(${VORPALINE_WITH_DDT}/lib/32) ++ endif() ++ target_link_libraries(${ARGV0} dmallocthcxx) ++ endif() ++ ++ if(UNIX) ++ target_link_libraries(${ARGV0} m pthread) ++ endif() ++ ++endmacro() ++ Property changes on: head/math/geogram/files/patch-cmake_platforms_FreeBSD-clang.cmake ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/math/geogram/files/patch-cmake_platforms_FreeBSD.cmake =================================================================== --- head/math/geogram/files/patch-cmake_platforms_FreeBSD.cmake (nonexistent) +++ head/math/geogram/files/patch-cmake_platforms_FreeBSD.cmake (revision 487072) @@ -0,0 +1,26 @@ +--- cmake/platforms/FreeBSD.cmake.orig 2018-12-09 17:30:49 UTC ++++ cmake/platforms/FreeBSD.cmake +@@ -0,0 +1,23 @@ ++### ++### Adopted from cmake/platforms/Linux.cmake ++### ++ ++#------------------------------------------------------------------- ++# Flags common to all Linux based platforms ++#------------------------------------------------------------------- ++ ++# Shell script extension ++set(SHELL_SUFFIX "sh") ++ ++# This flag MUST be added to solve a bug related to shared lib dynamic loading ++# (std::type_infos representing the same template type do not compare equal, ++# introducing subtle bugs) ++# IMPORTANT: DO NOT ADD THIS FLAG WITH STATIC LINKING ++#add_flags(CMAKE_EXE_LINKER_FLAGS "-Wl,-E") ++ ++# Forbid undefined symbols at link time (shared libraries and executables) ++add_flags(CMAKE_SHARED_LINKER_FLAGS "-Wl,--no-undefined") ++add_flags(CMAKE_EXE_LINKER_FLAGS "-Wl,--no-undefined") ++ ++# Link with the loader library ++list(APPEND SYSLIBS ${CMAKE_DL_LIBS}) Property changes on: head/math/geogram/files/patch-cmake_platforms_FreeBSD.cmake ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/math/geogram/files/patch-cmake_platforms_FreeBSD_config.cmake =================================================================== --- head/math/geogram/files/patch-cmake_platforms_FreeBSD_config.cmake (nonexistent) +++ head/math/geogram/files/patch-cmake_platforms_FreeBSD_config.cmake (revision 487072) @@ -0,0 +1,8 @@ +--- cmake/platforms/FreeBSD/config.cmake.orig 2018-12-09 17:34:34 UTC ++++ cmake/platforms/FreeBSD/config.cmake +@@ -0,0 +1,5 @@ ++set(VORPALINE_ARCH_64 true) ++include(${GEOGRAM_SOURCE_DIR}/cmake/platforms/FreeBSD-clang.cmake) ++#add_flags(CMAKE_CXX_FLAGS -m64) ++#add_flags(CMAKE_C_FLAGS -m64) ++ Property changes on: head/math/geogram/files/patch-cmake_platforms_FreeBSD_config.cmake ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/math/geogram/files/patch-cmake_platforms_FreeBSD_setvars.sh =================================================================== --- head/math/geogram/files/patch-cmake_platforms_FreeBSD_setvars.sh (nonexistent) +++ head/math/geogram/files/patch-cmake_platforms_FreeBSD_setvars.sh (revision 487072) @@ -0,0 +1,5 @@ +--- cmake/platforms/FreeBSD/setvars.sh.orig 2018-12-09 17:34:38 UTC ++++ cmake/platforms/FreeBSD/setvars.sh +@@ -0,0 +1,2 @@ ++#export CC=clang ++#export CXX=clang++ Property changes on: head/math/geogram/files/patch-cmake_platforms_FreeBSD_setvars.sh ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/math/geogram/files/patch-src_lib_geogram__gfx_glup__viewer_glup__viewer.c =================================================================== --- head/math/geogram/files/patch-src_lib_geogram__gfx_glup__viewer_glup__viewer.c (nonexistent) +++ head/math/geogram/files/patch-src_lib_geogram__gfx_glup__viewer_glup__viewer.c (revision 487072) @@ -0,0 +1,16 @@ +--- src/lib/geogram_gfx/glup_viewer/glup_viewer.c.orig 2018-12-09 17:49:50 UTC ++++ src/lib/geogram_gfx/glup_viewer/glup_viewer.c +@@ -64,11 +64,11 @@ + #include + #endif + +-#ifndef __APPLE__ ++#if !defined(__APPLE__) && !defined(__FreeBSD__) + #include + #endif + +-#if defined(__APPLE__) || defined(__linux__) || defined(__EMSCRIPTEN__) ++#if defined(__APPLE__) || defined(__linux__) || defined(__FreeBSD__) || defined(__EMSCRIPTEN__) + #include + static void glup_viewer_pause() { + usleep(1000); Property changes on: head/math/geogram/files/patch-src_lib_geogram__gfx_glup__viewer_glup__viewer.c ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/math/geogram/files/patch-src_lib_geogram_basic_algorithm.h =================================================================== --- head/math/geogram/files/patch-src_lib_geogram_basic_algorithm.h (nonexistent) +++ head/math/geogram/files/patch-src_lib_geogram_basic_algorithm.h (revision 487072) @@ -0,0 +1,11 @@ +--- src/lib/geogram/basic/algorithm.h.orig 2018-12-09 17:43:13 UTC ++++ src/lib/geogram/basic/algorithm.h +@@ -48,7 +48,7 @@ + + #include + +-#if defined(GEO_OS_LINUX) && defined(GEO_OPENMP) ++#if (defined(GEO_OS_LINUX) || defined(GEO_OS_FREEBSD)) && defined(GEO_OPENMP) + #if (__GNUC__ >= 4) && (__GNUC_MINOR__ >= 4) && !defined(GEO_OS_ANDROID) + #include + #define GEO_USE_GCC_PARALLEL_STL Property changes on: head/math/geogram/files/patch-src_lib_geogram_basic_algorithm.h ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/math/geogram/files/patch-src_lib_geogram_basic_atomics.h =================================================================== --- head/math/geogram/files/patch-src_lib_geogram_basic_atomics.h (nonexistent) +++ head/math/geogram/files/patch-src_lib_geogram_basic_atomics.h (revision 487072) @@ -0,0 +1,11 @@ +--- src/lib/geogram/basic/atomics.h.orig 2018-12-09 17:41:31 UTC ++++ src/lib/geogram/basic/atomics.h +@@ -54,7 +54,7 @@ + * \brief Functions for atomic operations + */ + +-#ifdef GEO_OS_LINUX ++#if defined(GEO_OS_LINUX) || defined(GEO_OS_FREEBSD) + # if defined(GEO_OS_EMSCRIPTEN) + # define GEO_USE_DUMMY_ATOMICS + # elif defined(GEO_OS_RASPBERRY) Property changes on: head/math/geogram/files/patch-src_lib_geogram_basic_atomics.h ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/math/geogram/files/patch-src_lib_geogram_basic_command__line.cpp =================================================================== --- head/math/geogram/files/patch-src_lib_geogram_basic_command__line.cpp (nonexistent) +++ head/math/geogram/files/patch-src_lib_geogram_basic_command__line.cpp (revision 487072) @@ -0,0 +1,11 @@ +--- src/lib/geogram/basic/command_line.cpp.orig 2018-12-09 17:46:56 UTC ++++ src/lib/geogram/basic/command_line.cpp +@@ -54,7 +54,7 @@ + #include + #include + +-#if defined(GEO_OS_LINUX) || defined(GEO_OS_APPLE) ++#if defined(GEO_OS_LINUX) || defined(GEO_OS_FREEBSD) || defined(GEO_OS_APPLE) + #include + #include + #include Property changes on: head/math/geogram/files/patch-src_lib_geogram_basic_command__line.cpp ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/math/geogram/files/patch-src_lib_geogram_basic_common.h =================================================================== --- head/math/geogram/files/patch-src_lib_geogram_basic_common.h (nonexistent) +++ head/math/geogram/files/patch-src_lib_geogram_basic_common.h (revision 487072) @@ -0,0 +1,38 @@ +--- src/lib/geogram/basic/common.h.orig 2018-12-09 17:36:40 UTC ++++ src/lib/geogram/basic/common.h +@@ -221,6 +221,35 @@ namespace GEO { + # define GEO_ARCH_32 + #endif + ++// =============================== FreeBSD defines ========================= ++ ++#elif defined(__FreeBSD__) ++ ++#define GEO_OS_FREEBSD ++#define GEO_OS_UNIX ++ ++#if defined(_OPENMP) ++# define GEO_OPENMP ++#endif ++ ++#if defined(__INTEL_COMPILER) ++# define GEO_COMPILER_INTEL ++#elif defined(__clang__) ++# define GEO_COMPILER_CLANG ++#elif defined(__GNUC__) ++# define GEO_COMPILER_GCC ++#else ++# error "Unsupported compiler" ++#endif ++ ++// The following works on GCC and ICC ++#if defined(__x86_64) ++# define GEO_ARCH_64 ++#else ++# define GEO_ARCH_32 ++#endif ++ ++ + // =============================== WINDOWS defines ========================= + + #elif defined(_WIN32) || defined(_WIN64) Property changes on: head/math/geogram/files/patch-src_lib_geogram_basic_common.h ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/math/geogram/files/patch-src_lib_geogram_basic_thread__sync.h =================================================================== --- head/math/geogram/files/patch-src_lib_geogram_basic_thread__sync.h (nonexistent) +++ head/math/geogram/files/patch-src_lib_geogram_basic_thread__sync.h (revision 487072) @@ -0,0 +1,20 @@ +--- src/lib/geogram/basic/thread_sync.h.orig 2018-12-09 17:42:18 UTC ++++ src/lib/geogram/basic/thread_sync.h +@@ -122,7 +122,7 @@ namespace GEO { + unlock_mutex_android(&x); + } + +-#elif defined(GEO_OS_LINUX) || defined(GEO_COMPILER_MINGW) ++#elif defined(GEO_OS_LINUX) || defined(GEO_OS_FREEBSD) || defined(GEO_COMPILER_MINGW) + + /** A lightweight synchronization structure. */ + typedef unsigned char spinlock; +@@ -500,7 +500,7 @@ namespace GEO { + index_t size_; + }; + +-#elif defined(GEO_OS_LINUX) ++#elif defined(GEO_OS_LINUX) || defined(GEO_OS_FREEBSD) + + /** + * \brief An array of light-weight synchronisation Property changes on: head/math/geogram/files/patch-src_lib_geogram_basic_thread__sync.h ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/math/geogram/files/patch-src_lib_geogram_lua_lua__io.cpp =================================================================== --- head/math/geogram/files/patch-src_lib_geogram_lua_lua__io.cpp (nonexistent) +++ head/math/geogram/files/patch-src_lib_geogram_lua_lua__io.cpp (revision 487072) @@ -0,0 +1,11 @@ +--- src/lib/geogram/lua/lua_io.cpp.orig 2018-12-09 17:40:56 UTC ++++ src/lib/geogram/lua/lua_io.cpp +@@ -243,6 +243,8 @@ namespace { + const char* result = "unknown"; + #if defined(GEO_OS_LINUX) + result = "Linux"; ++#elif defined(GEO_OS_FREEBSD) ++ result = "FreeBSD"; + #elif defined(GEO_OS_APPLE) + result = "Apple"; + #elif defined(GEO_OS_WINDOWS) Property changes on: head/math/geogram/files/patch-src_lib_geogram_lua_lua__io.cpp ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/math/geogram/pkg-descr =================================================================== --- head/math/geogram/pkg-descr (nonexistent) +++ head/math/geogram/pkg-descr (revision 487072) @@ -0,0 +1,12 @@ +Geogram is a programming library of geometric algorithms. It includes a simple +yet efficient Mesh data structure (for surfacic and volumetric meshes), exact +computer arithmetics (a-la Shewchuck, implemented in GEO::expansion), a +predicate code generator (PCK: Predicate Construction Kit), standard geometric +predicates (orient/insphere), Delaunay triangulation, Voronoi diagram, spatial +search data structures, spatial sorting) and less standard ones (more general +geometric predicates, intersection between a Voronoi diagram and a triangular or +tetrahedral mesh embedded in n dimensions). The latter is used by FWD/WarpDrive, +the first algorithm that computes semi-discrete Optimal Transport in 3d that +scales up to 1 million Dirac masses (see compute_OTM in example programs). + +WWW: http://alice.loria.fr/software/geogram/doc/html/index.html Property changes on: head/math/geogram/pkg-descr ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/math/geogram/pkg-plist =================================================================== --- head/math/geogram/pkg-plist (nonexistent) +++ head/math/geogram/pkg-plist (revision 487072) @@ -0,0 +1,311 @@ +bin/geobox +bin/geocod +bin/geodump +bin/geogram_demo_Delaunay2d +bin/geogram_demo_Delaunay3d +bin/geogram_demo_Evert +bin/geogram_demo_GLUP +bin/geogram_demo_Raytrace +bin/vorpalite +bin/vorpaview +include/geogram1/geogram/NL/nl.h +include/geogram1/geogram/NL/nl_arpack.h +include/geogram1/geogram/NL/nl_blas.h +include/geogram1/geogram/NL/nl_cholmod.h +include/geogram1/geogram/NL/nl_context.h +include/geogram1/geogram/NL/nl_cuda.h +include/geogram1/geogram/NL/nl_ext.h +include/geogram1/geogram/NL/nl_iterative_solvers.h +include/geogram1/geogram/NL/nl_linkage.h +include/geogram1/geogram/NL/nl_matrix.h +include/geogram1/geogram/NL/nl_mkl.h +include/geogram1/geogram/NL/nl_preconditioners.h +include/geogram1/geogram/NL/nl_private.h +include/geogram1/geogram/NL/nl_superlu.h +include/geogram1/geogram/api/defs.h +include/geogram1/geogram/basic/algorithm.h +include/geogram1/geogram/basic/argused.h +include/geogram1/geogram/basic/assert.h +include/geogram1/geogram/basic/atomics.h +include/geogram1/geogram/basic/attributes.h +include/geogram1/geogram/basic/b_stream.h +include/geogram1/geogram/basic/command_line.h 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