Index: head/science/Makefile =================================================================== --- head/science/Makefile (revision 485989) +++ head/science/Makefile (revision 485990) @@ -1,310 +1,311 @@ # $FreeBSD$ # COMMENT = Scientific ports SUBDIR += 2d-rewriter SUBDIR += ALPSCore SUBDIR += InsightToolkit SUBDIR += MOOSE-neural-simulator SUBDIR += PETSc SUBDIR += R-cran-AMORE SUBDIR += R-cran-DCluster SUBDIR += R-cran-Epi SUBDIR += R-cran-bayesm SUBDIR += R-cran-cmprsk SUBDIR += R-cran-e1071 SUBDIR += R-cran-eco SUBDIR += R-cran-epicalc SUBDIR += R-cran-etm SUBDIR += R-cran-fastICA SUBDIR += R-cran-kernlab SUBDIR += R-cran-snow SUBDIR += R-cran-som SUBDIR += R-cran-udunits2 SUBDIR += abinit SUBDIR += afni SUBDIR += aircraft-datcom SUBDIR += antioch SUBDIR += atom SUBDIR += atompaw SUBDIR += avogadro SUBDIR += avogadro2 SUBDIR += avogadrolibs SUBDIR += bagel SUBDIR += berkeleygw SUBDIR += bddsolve SUBDIR += bodr SUBDIR += brian SUBDIR += buddy SUBDIR += cdcl SUBDIR += cdf SUBDIR += cdo SUBDIR += cgnslib SUBDIR += cgribex SUBDIR += checkmol SUBDIR += chemical-mime-data SUBDIR += chemps2 SUBDIR += chemtool SUBDIR += chemtool-devel SUBDIR += chrono SUBDIR += clhep SUBDIR += clipper SUBDIR += code_saturne SUBDIR += colt SUBDIR += coordgenlibs SUBDIR += coot SUBDIR += cp2k SUBDIR += crf++ SUBDIR += dalton SUBDIR += datawarrior SUBDIR += dcl SUBDIR += devisor SUBDIR += dft_tools SUBDIR += dftbplus SUBDIR += dkh SUBDIR += dlib-cpp SUBDIR += dlpoly-classic SUBDIR += eccodes SUBDIR += elk SUBDIR += epte SUBDIR += erd SUBDIR += erkale SUBDIR += esys-particle SUBDIR += fastcap SUBDIR += fasthenry SUBDIR += fisicalab SUBDIR += fleur SUBDIR += fsom SUBDIR += fvcom SUBDIR += fvcom-mpi SUBDIR += gabedit SUBDIR += gamess-us SUBDIR += gchemutils SUBDIR += gdma SUBDIR += getdp SUBDIR += ghemical SUBDIR += ghmm SUBDIR += gnudatalanguage SUBDIR += gpaw-setups SUBDIR += gramps SUBDIR += grib_api SUBDIR += gromacs SUBDIR += gsmc SUBDIR += gtamsanalyzer SUBDIR += gwyddion SUBDIR += h5utils SUBDIR += harminv SUBDIR += hdf SUBDIR += hdf5 SUBDIR += hdf5-18 SUBDIR += hypre SUBDIR += iboview SUBDIR += isaac-cfd SUBDIR += jdftx SUBDIR += jstrack SUBDIR += kalzium SUBDIR += kalzium-kde4 SUBDIR += kst2 SUBDIR += lammps SUBDIR += lamprop SUBDIR += latte SUBDIR += libaec SUBDIR += libccp4 SUBDIR += libcint SUBDIR += libctl SUBDIR += libefp SUBDIR += libgeodecomp SUBDIR += libghemical SUBDIR += libgridxc SUBDIR += libint SUBDIR += libint2 SUBDIR += libkml SUBDIR += liblinear SUBDIR += libmsym SUBDIR += liboglappth SUBDIR += libquantum SUBDIR += libssm SUBDIR += libsvm SUBDIR += libsvm-python SUBDIR += libxc SUBDIR += liggghts SUBDIR += linsmith SUBDIR += lm SUBDIR += luscus SUBDIR += madness SUBDIR += maeparser SUBDIR += massxpert SUBDIR += mbdyn SUBDIR += mcstas SUBDIR += mcstas-comps SUBDIR += mcxtrace SUBDIR += mcxtrace-comps SUBDIR += mdynamix SUBDIR += medit SUBDIR += meep SUBDIR += metaf2xml SUBDIR += metaphysicl SUBDIR += minc2 SUBDIR += mmdb2 SUBDIR += mmtf SUBDIR += mol2ps SUBDIR += molgif SUBDIR += molsketch SUBDIR += mpb SUBDIR += mpqc SUBDIR += msms SUBDIR += multiwfn SUBDIR += namd SUBDIR += netcdf SUBDIR += netcdf-cxx SUBDIR += netcdf-fortran SUBDIR += nifticlib SUBDIR += nwchem SUBDIR += octopus SUBDIR += openbabel SUBDIR += openkim SUBDIR += openmx SUBDIR += opensim-core SUBDIR += openstructure SUBDIR += p5-Algorithm-SVMLight SUBDIR += p5-Chemistry-3DBuilder SUBDIR += p5-Chemistry-Bond-Find SUBDIR += p5-Chemistry-Canonicalize SUBDIR += p5-Chemistry-Elements SUBDIR += p5-Chemistry-File-MDLMol SUBDIR += p5-Chemistry-File-Mopac SUBDIR += p5-Chemistry-File-PDB SUBDIR += p5-Chemistry-File-SLN SUBDIR += p5-Chemistry-File-SMARTS SUBDIR += p5-Chemistry-File-SMILES SUBDIR += p5-Chemistry-File-VRML SUBDIR += p5-Chemistry-File-XYZ SUBDIR += p5-Chemistry-FormulaPattern SUBDIR += p5-Chemistry-InternalCoords SUBDIR += p5-Chemistry-Isotope SUBDIR += p5-Chemistry-MacroMol SUBDIR += p5-Chemistry-MidasPattern SUBDIR += p5-Chemistry-Mok SUBDIR += p5-Chemistry-Mol SUBDIR += p5-Chemistry-Pattern SUBDIR += p5-Chemistry-Reaction SUBDIR += p5-Chemistry-Ring SUBDIR += p5-Geo-BUFR SUBDIR += p5-Geo-Coordinates-Converter SUBDIR += p5-Geo-Coordinates-Converter-iArea SUBDIR += p5-Geo-ReadGRIB SUBDIR += p5-Geo-WebService-Elevation-USGS SUBDIR += p5-Mcstas-Tools SUBDIR += p5-PerlMol SUBDIR += p5-Physics-Unit SUBDIR += paje SUBDIR += paraview SUBDIR += pcmsolver SUBDIR += pnetcdf SUBDIR += psychopy SUBDIR += pulseview SUBDIR += py-DendroPy SUBDIR += py-PyFR SUBDIR += py-lifelines SUBDIR += py-MDAnalysis SUBDIR += py-MDAnalysisTests SUBDIR += py-OpenFermion SUBDIR += py-PyQuante SUBDIR += py-ScientificPython SUBDIR += py-SimpleSpectral SUBDIR += py-abipy SUBDIR += py-ase SUBDIR += py-avogadrolibs SUBDIR += py-cdo SUBDIR += py-chempy SUBDIR += py-coards SUBDIR += py-dlib SUBDIR += py-gpaw SUBDIR += py-gsd SUBDIR += py-h5py SUBDIR += py-hcluster SUBDIR += py-kinematics SUBDIR += py-mdp SUBDIR += py-mlpy SUBDIR += py-mmtf-python SUBDIR += py-molmod SUBDIR += py-netCDF4 SUBDIR += py-obspy SUBDIR += py-openpiv SUBDIR += py-paida SUBDIR += py-phono3py SUBDIR += py-phonopy SUBDIR += py-pupynere SUBDIR += py-pyaixi SUBDIR += py-pydicom SUBDIR += py-pymatgen SUBDIR += py-pymol SUBDIR += py-pyosf SUBDIR += py-pysal SUBDIR += py-pyteomics SUBDIR += py-pyteomics.biolccc SUBDIR += py-qspin SUBDIR += py-quantities SUBDIR += py-rmf SUBDIR += py-scikit-fuzzy SUBDIR += py-scikit-learn SUBDIR += py-scikit-sparse SUBDIR += py-scimath SUBDIR += py-scipy SUBDIR += py-scoria SUBDIR += py-spglib SUBDIR += py-veusz SUBDIR += py-ws2300 SUBDIR += pybrain SUBDIR += pycdf SUBDIR += pynn SUBDIR += qbox SUBDIR += qcl SUBDIR += qmcpack SUBDIR += qtresistors SUBDIR += quantum-espresso SUBDIR += quantum-espresso-pseudopotentials SUBDIR += qwalk SUBDIR += rdkit SUBDIR += rmf SUBDIR += rubygem-ai4r SUBDIR += rubygem-cdo SUBDIR += rubygem-rgeo SUBDIR += rubygem-rgeo-geojson SUBDIR += rubygem-rgeo-proj4 SUBDIR += rubygem-rgeo-shapefile SUBDIR += rubygem-ruby-dcl SUBDIR += rubygem-ruby-netcdf SUBDIR += siesta SUBDIR += sigrok-cli SUBDIR += sigrok-firmware SUBDIR += sigrok-firmware-fx2lafw SUBDIR += sigrok-firmware-utils SUBDIR += silo SUBDIR += simbody SUBDIR += simint SUBDIR += simlib SUBDIR += simsmith SUBDIR += sparta SUBDIR += spglib SUBDIR += step SUBDIR += step-kde4 SUBDIR += svmlight SUBDIR += szip SUBDIR += teem SUBDIR += tfel SUBDIR += tinker SUBDIR += triqs SUBDIR += udunits SUBDIR += v_sim SUBDIR += vmd SUBDIR += voro++ SUBDIR += wannier90 SUBDIR += wxmacmolplt SUBDIR += xcrysden SUBDIR += xdrawchem SUBDIR += xfce4-equake-plugin SUBDIR += xmakemol + SUBDIR += yoda .include Index: head/science/yoda/Makefile =================================================================== --- head/science/yoda/Makefile (nonexistent) +++ head/science/yoda/Makefile (revision 485990) @@ -0,0 +1,38 @@ +# $FreeBSD$ + +PORTNAME= yoda +DISTVERSION= 1.7.3 +CATEGORIES= science +MASTER_SITES= http://www.hepforge.org/archive/${PORTNAME}/ +DISTNAME= ${PORTNAME:tu}-${DISTVERSION} + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Particle physics package with classes for data analysis, histogramming + +LICENSE= GPLv2 +xLICENSE_FILE= ${WRKSRC}/COPYING + +LIB_DEPENDS= libderiv.so:science/libint + +USES= gmake libtool shebangfix +GNU_CONFIGURE= yes +USE_LDCONFIG= yes + +OPTIONS_DEFINE= PYTHON +OPTIONS_SUB= yes + +PYTHON_USES= python +PYTHON_USE= PYTHON=cython +PYTHON_CONFIGURE_ENABLE= pyext +PYTHON_MAKE_ENV= PYTHON_VERSION=${PYTHON_VER} PYTHON=${PYTHON_CMD} +PYTHON_VARS= SHEBANG_FILES="bin/${PORTNAME}* bin/aida2yoda bin/aida2flat bin/flat2yoda" +PYTHON_BROKEN= Fails with "Error: 'lib/python2.7/site-packages/yoda/plotting.pyc' is referring to /usr/ports/science/yoda/work/stage" + +post-install-PYTHON-on: + @${MKDIR} ${STAGEDIR}${PREFIX}/share/bash-completion/completions + @${MV} ${STAGEDIR}${PREFIX}/share/${PORTNAME:tu}/yoda-completion ${STAGEDIR}${PREFIX}/share/bash-completion/completions/ + +post-install-PYTHON-off: + @${RM} -r ${STAGEDIR}${PREFIX}/share/${PORTNAME:tu} + +.include Property changes on: head/science/yoda/Makefile ___________________________________________________________________ Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:keywords ## -0,0 +1 ## +FreeBSD=%H \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/science/yoda/distinfo =================================================================== --- head/science/yoda/distinfo (nonexistent) +++ head/science/yoda/distinfo (revision 485990) @@ -0,0 +1,3 @@ +TIMESTAMP = 1543294026 +SHA256 (YODA-1.7.3.tar.gz) = 7189fd2bcc308a71b3e1a19fabe32ce7b47b63ea6acd8adffca3aa751ad33e96 +SIZE (YODA-1.7.3.tar.gz) = 1320716 Property changes on: head/science/yoda/distinfo ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/science/yoda/pkg-descr =================================================================== --- head/science/yoda/pkg-descr (nonexistent) +++ head/science/yoda/pkg-descr (revision 485990) @@ -0,0 +1,5 @@ +YODA is a small set of data analysis (specifically histogramming) classes being +developed by MCnet members as a lightweight common system for MC event generator +validation analyses, particularly as the core histogramming system in Rivet. + +WWW: https://yoda.hepforge.org/ Property changes on: head/science/yoda/pkg-descr ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/science/yoda/pkg-plist =================================================================== --- head/science/yoda/pkg-plist (nonexistent) +++ head/science/yoda/pkg-plist (revision 485990) @@ -0,0 +1,62 @@ +bin/yoda-config +include/YODA/AnalysisObject.h +include/YODA/Axis1D.h +include/YODA/Axis2D.h +include/YODA/Bin.h +include/YODA/Bin1D.h +include/YODA/Bin2D.h +include/YODA/Config/BuildConfig.h +include/YODA/Config/YodaConfig.h +include/YODA/Counter.h +include/YODA/Dbn0D.h +include/YODA/Dbn1D.h +include/YODA/Dbn2D.h +include/YODA/Dbn3D.h +include/YODA/ErrorND.h +include/YODA/Exceptions.h +include/YODA/Histo1D.h +include/YODA/Histo2D.h +include/YODA/HistoBin1D.h +include/YODA/HistoBin2D.h +include/YODA/IO.h +include/YODA/Point.h +include/YODA/Point1D.h +include/YODA/Point2D.h +include/YODA/Point3D.h +include/YODA/PointND.h +include/YODA/Profile1D.h +include/YODA/Profile2D.h +include/YODA/ProfileBin1D.h +include/YODA/ProfileBin2D.h +include/YODA/ROOTCnv.h +include/YODA/Reader.h +include/YODA/ReaderAIDA.h +include/YODA/ReaderFLAT.h +include/YODA/ReaderMethods.icc +include/YODA/ReaderYODA.h +include/YODA/Scatter1D.h +include/YODA/Scatter2D.h +include/YODA/Scatter3D.h +include/YODA/ScatterND.h +include/YODA/Utils/BinSearcher.h +include/YODA/Utils/Formatting.h +include/YODA/Utils/MathUtils.h +include/YODA/Utils/Predicates.h +include/YODA/Utils/StringUtils.h +include/YODA/Utils/Traits.h +include/YODA/Utils/cachedvector.h +include/YODA/Utils/fastlog.h +include/YODA/Utils/getline.h +include/YODA/Utils/indexedset.h +include/YODA/Utils/ndarray.h +include/YODA/Utils/sortedvector.h +include/YODA/Weights.h +include/YODA/Writer.h +include/YODA/WriterAIDA.h +include/YODA/WriterFLAT.h +include/YODA/WriterMethods.icc +include/YODA/WriterYODA.h +include/YODA/YODA.h +lib/libYODA.so +libdata/pkgconfig/yoda.pc +%%PYTHON%%share/bash-completion/completions/yoda-completion Property changes on: head/science/yoda/pkg-plist ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property