Index: head/science/Makefile =================================================================== --- head/science/Makefile (revision 485058) +++ head/science/Makefile (revision 485059) @@ -1,307 +1,308 @@ # $FreeBSD$ # COMMENT = Scientific ports SUBDIR += 2d-rewriter SUBDIR += ALPSCore SUBDIR += InsightToolkit SUBDIR += MOOSE-neural-simulator SUBDIR += PETSc SUBDIR += R-cran-AMORE SUBDIR += R-cran-DCluster SUBDIR += R-cran-Epi SUBDIR += R-cran-bayesm SUBDIR += R-cran-cmprsk SUBDIR += R-cran-e1071 SUBDIR += R-cran-eco SUBDIR += R-cran-epicalc SUBDIR += R-cran-etm SUBDIR += R-cran-fastICA SUBDIR += R-cran-kernlab SUBDIR += R-cran-snow SUBDIR += R-cran-som SUBDIR += R-cran-udunits2 SUBDIR += abinit SUBDIR += afni SUBDIR += aircraft-datcom SUBDIR += antioch SUBDIR += atom SUBDIR += atompaw SUBDIR += avogadro SUBDIR += avogadro2 SUBDIR += avogadrolibs SUBDIR += bagel SUBDIR += bddsolve SUBDIR += bodr SUBDIR += brian SUBDIR += buddy SUBDIR += cdcl SUBDIR += cdf SUBDIR += cdo SUBDIR += cgnslib SUBDIR += cgribex SUBDIR += checkmol SUBDIR += chemical-mime-data SUBDIR += chemps2 SUBDIR += chemtool SUBDIR += chemtool-devel SUBDIR += chrono SUBDIR += clhep SUBDIR += clipper SUBDIR += code_saturne SUBDIR += colt SUBDIR += coordgenlibs SUBDIR += coot SUBDIR += cp2k SUBDIR += crf++ SUBDIR += dalton SUBDIR += datawarrior SUBDIR += dcl SUBDIR += devisor SUBDIR += dft_tools SUBDIR += dftbplus SUBDIR += dkh SUBDIR += dlib-cpp SUBDIR += dlpoly-classic SUBDIR += eccodes SUBDIR += elk SUBDIR += epte SUBDIR += erd SUBDIR += erkale SUBDIR += esys-particle SUBDIR += fastcap SUBDIR += fasthenry SUBDIR += fisicalab SUBDIR += fleur SUBDIR += fsom SUBDIR += fvcom SUBDIR += fvcom-mpi SUBDIR += gabedit SUBDIR += gamess-us SUBDIR += gchemutils SUBDIR += gdma SUBDIR += getdp SUBDIR += ghemical SUBDIR += ghmm SUBDIR += gnudatalanguage SUBDIR += gpaw-setups SUBDIR += gramps SUBDIR += grib_api SUBDIR += gromacs SUBDIR += gsmc SUBDIR += gtamsanalyzer SUBDIR += gwyddion SUBDIR += h5utils SUBDIR += harminv SUBDIR += hdf SUBDIR += hdf5 SUBDIR += hdf5-18 SUBDIR += hypre SUBDIR += iboview SUBDIR += isaac-cfd SUBDIR += jdftx SUBDIR += jstrack SUBDIR += kalzium SUBDIR += kalzium-kde4 SUBDIR += kst2 SUBDIR += lammps SUBDIR += lamprop SUBDIR += latte SUBDIR += libaec SUBDIR += libccp4 SUBDIR += libcint SUBDIR += libctl SUBDIR += libefp SUBDIR += libgeodecomp SUBDIR += libghemical SUBDIR += libgridxc SUBDIR += libint SUBDIR += libint2 SUBDIR += libkml SUBDIR += liblinear SUBDIR += libmsym SUBDIR += liboglappth SUBDIR += libquantum SUBDIR += libssm SUBDIR += libsvm SUBDIR += libsvm-python SUBDIR += libxc SUBDIR += liggghts SUBDIR += linsmith SUBDIR += lm SUBDIR += luscus SUBDIR += madness SUBDIR += maeparser SUBDIR += massxpert SUBDIR += mbdyn SUBDIR += mcstas SUBDIR += mcstas-comps SUBDIR += mcxtrace SUBDIR += mcxtrace-comps SUBDIR += mdynamix SUBDIR += medit SUBDIR += meep SUBDIR += metaf2xml SUBDIR += metaphysicl SUBDIR += minc2 SUBDIR += mmdb2 SUBDIR += mmtf SUBDIR += mol2ps SUBDIR += molgif SUBDIR += molsketch SUBDIR += mpb SUBDIR += mpqc SUBDIR += msms SUBDIR += multiwfn SUBDIR += namd SUBDIR += netcdf SUBDIR += netcdf-cxx SUBDIR += netcdf-fortran SUBDIR += nifticlib SUBDIR += nwchem SUBDIR += octopus SUBDIR += openbabel SUBDIR += openkim SUBDIR += openmx + SUBDIR += opensim-core SUBDIR += openstructure SUBDIR += p5-Algorithm-SVMLight SUBDIR += p5-Chemistry-3DBuilder SUBDIR += p5-Chemistry-Bond-Find SUBDIR += p5-Chemistry-Canonicalize SUBDIR += p5-Chemistry-Elements SUBDIR += p5-Chemistry-File-MDLMol SUBDIR += p5-Chemistry-File-Mopac SUBDIR += p5-Chemistry-File-PDB SUBDIR += p5-Chemistry-File-SLN SUBDIR += p5-Chemistry-File-SMARTS SUBDIR += p5-Chemistry-File-SMILES SUBDIR += p5-Chemistry-File-VRML SUBDIR += p5-Chemistry-File-XYZ SUBDIR += p5-Chemistry-FormulaPattern SUBDIR += p5-Chemistry-InternalCoords SUBDIR += p5-Chemistry-Isotope SUBDIR += p5-Chemistry-MacroMol SUBDIR += p5-Chemistry-MidasPattern SUBDIR += p5-Chemistry-Mok SUBDIR += p5-Chemistry-Mol SUBDIR += p5-Chemistry-Pattern SUBDIR += p5-Chemistry-Reaction SUBDIR += p5-Chemistry-Ring SUBDIR += p5-Geo-BUFR SUBDIR += p5-Geo-Coordinates-Converter SUBDIR += p5-Geo-Coordinates-Converter-iArea SUBDIR += p5-Geo-ReadGRIB SUBDIR += p5-Geo-WebService-Elevation-USGS SUBDIR += p5-Mcstas-Tools SUBDIR += p5-PerlMol SUBDIR += p5-Physics-Unit SUBDIR += paje SUBDIR += paraview SUBDIR += pcmsolver SUBDIR += pnetcdf SUBDIR += psychopy SUBDIR += pulseview SUBDIR += py-DendroPy SUBDIR += py-PyFR SUBDIR += py-lifelines SUBDIR += py-MDAnalysis SUBDIR += py-MDAnalysisTests SUBDIR += py-OpenFermion SUBDIR += py-PyQuante SUBDIR += py-ScientificPython SUBDIR += py-SimpleSpectral SUBDIR += py-abipy SUBDIR += py-ase SUBDIR += py-avogadrolibs SUBDIR += py-cdo SUBDIR += py-chempy SUBDIR += py-coards SUBDIR += py-dlib SUBDIR += py-gpaw SUBDIR += py-gsd SUBDIR += py-h5py SUBDIR += py-hcluster SUBDIR += py-kinematics SUBDIR += py-mdp SUBDIR += py-mlpy SUBDIR += py-mmtf-python SUBDIR += py-molmod SUBDIR += py-netCDF4 SUBDIR += py-obspy SUBDIR += py-openpiv SUBDIR += py-paida SUBDIR += py-phono3py SUBDIR += py-phonopy SUBDIR += py-pupynere SUBDIR += py-pyaixi SUBDIR += py-pydicom SUBDIR += py-pymatgen SUBDIR += py-pymol SUBDIR += py-pyosf SUBDIR += py-pysal SUBDIR += py-pyteomics SUBDIR += py-pyteomics.biolccc SUBDIR += py-qspin SUBDIR += py-quantities SUBDIR += py-rmf SUBDIR += py-scikit-fuzzy SUBDIR += py-scikit-learn SUBDIR += py-scikit-sparse SUBDIR += py-scimath SUBDIR += py-scipy SUBDIR += py-scoria SUBDIR += py-spglib SUBDIR += py-veusz SUBDIR += py-ws2300 SUBDIR += pybrain SUBDIR += pycdf SUBDIR += pynn SUBDIR += qbox SUBDIR += qcl SUBDIR += qmcpack SUBDIR += qtresistors SUBDIR += quantum-espresso SUBDIR += qwalk SUBDIR += rdkit SUBDIR += rmf SUBDIR += rubygem-ai4r SUBDIR += rubygem-cdo SUBDIR += rubygem-rgeo SUBDIR += rubygem-rgeo-geojson SUBDIR += rubygem-rgeo-proj4 SUBDIR += rubygem-rgeo-shapefile SUBDIR += rubygem-ruby-dcl SUBDIR += rubygem-ruby-netcdf SUBDIR += siesta SUBDIR += sigrok-cli SUBDIR += sigrok-firmware SUBDIR += sigrok-firmware-fx2lafw SUBDIR += sigrok-firmware-utils SUBDIR += silo SUBDIR += simbody SUBDIR += simint SUBDIR += simlib SUBDIR += simsmith SUBDIR += sparta SUBDIR += spglib SUBDIR += step SUBDIR += step-kde4 SUBDIR += svmlight SUBDIR += szip SUBDIR += teem SUBDIR += tfel SUBDIR += tinker SUBDIR += triqs SUBDIR += udunits SUBDIR += v_sim SUBDIR += vmd SUBDIR += voro++ SUBDIR += wannier90 SUBDIR += wxmacmolplt SUBDIR += xcrysden SUBDIR += xdrawchem SUBDIR += xfce4-equake-plugin SUBDIR += xmakemol .include Index: head/science/opensim-core/Makefile =================================================================== --- head/science/opensim-core/Makefile (nonexistent) +++ head/science/opensim-core/Makefile (revision 485059) @@ -0,0 +1,39 @@ +# $FreeBSD$ + +PORTNAME= OpenSim +DISTVERSION= 4.0 +CATEGORIES= science +PKGNAMESUFFIX= -core + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Software for modeling of musculoskeletal structures + +LICENSE= APACHE20 +LICENSE_FILE= ${WRKSRC}/LICENSE.txt + +LIB_DEPENDS= libdocopt.so:devel/docopt.cpp \ + libSimTKcommon.so:science/simbody + +USES= blaslapack:openblas cmake:outsource compiler:c++11-lib fortran gl # fortran only for simbody/openblas +USE_GITHUB= yes +GH_ACCOUNT= ${PORTNAME:tl}-org +GH_PROJECT= ${PORTNAME:tl}-core +USE_GL= gl glu glut +USE_XORG= xi xmu +USE_LDCONFIG= yes + +CXXFLAGS+= -I${LOCALBASE}/include/docopt +CONFIGURE_ENV+= SIMBODY_HOME=${LOCALBASE} +CMAKE_OFF= OPENSIM_COPY_DEPENDENCIES DO_TESTING + +OPTIONS_DEFINE= DOCS +DOCS_CMAKE_BOOL= INSTALL_DOCS +PORTDOCS= * + +do-test: # 4 testcases are known to fail: https://github.com/opensim-org/opensim-core/issues/2379 + @cd ${BUILD_WRKSRC} && \ + ${SETENV} ${CONFIGURE_ENV} ${CMAKE_BIN} ${CMAKE_ARGS} -DDO_TESTING=ON ${CMAKE_SOURCE_PATH} && \ + ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} ${ALL_TARGET} && \ + ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} test + +.include Property changes on: head/science/opensim-core/Makefile ___________________________________________________________________ Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:keywords ## -0,0 +1 ## +FreeBSD=%H \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/science/opensim-core/distinfo =================================================================== --- head/science/opensim-core/distinfo (nonexistent) +++ head/science/opensim-core/distinfo (revision 485059) @@ -0,0 +1,3 @@ +TIMESTAMP = 1542256927 +SHA256 (opensim-org-opensim-core-4.0_GH0.tar.gz) = 3d9be82786d3040368b862ef4cf192bfdd34b996cab53aba6d86b6e74f6ba0d1 +SIZE (opensim-org-opensim-core-4.0_GH0.tar.gz) = 45202145 Property changes on: head/science/opensim-core/distinfo ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/science/opensim-core/files/patch-Applications_opensim-cmd_CMakeLists.txt =================================================================== --- head/science/opensim-core/files/patch-Applications_opensim-cmd_CMakeLists.txt (nonexistent) +++ head/science/opensim-core/files/patch-Applications_opensim-cmd_CMakeLists.txt (revision 485059) @@ -0,0 +1,11 @@ +--- Applications/opensim-cmd/CMakeLists.txt.orig 2018-11-15 17:30:25 UTC ++++ Applications/opensim-cmd/CMakeLists.txt +@@ -20,7 +20,7 @@ OpenSimAddApplication(NAME opensim-cmd + parse_arguments.h + ) + +-target_link_libraries(opensim-cmd docopt_s) ++target_link_libraries(opensim-cmd docopt) + + if(BUILD_TESTING) + subdirs(test) Property changes on: head/science/opensim-core/files/patch-Applications_opensim-cmd_CMakeLists.txt ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/science/opensim-core/files/patch-CMakeLists.txt =================================================================== --- head/science/opensim-core/files/patch-CMakeLists.txt (nonexistent) +++ head/science/opensim-core/files/patch-CMakeLists.txt (revision 485059) @@ -0,0 +1,23 @@ +--- CMakeLists.txt.orig 2018-11-12 23:49:48 UTC ++++ CMakeLists.txt +@@ -766,8 +766,10 @@ endif(WIN32) + + + ## The following are required to uses Dart and the Cdash dashboard per Jesse +-enable_testing() +-include(CTest) ++if (DO_TESTING) ++ enable_testing() ++ include(CTest) ++endif() + + # Sets the number of concurrent jobs that testing can use. + if(MSVC OR XCODE) +@@ -834,4 +836,6 @@ endif() + add_subdirectory(Bindings) + + add_subdirectory(cmake) +-add_subdirectory(doc) ++if (INSTALL_DOCS) ++ add_subdirectory(doc) ++endif() Property changes on: head/science/opensim-core/files/patch-CMakeLists.txt ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/science/opensim-core/files/patch-OpenSim_Common_IO.cpp =================================================================== --- head/science/opensim-core/files/patch-OpenSim_Common_IO.cpp (nonexistent) +++ head/science/opensim-core/files/patch-OpenSim_Common_IO.cpp (revision 485059) @@ -0,0 +1,38 @@ +--- OpenSim/Common/IO.cpp.orig 2018-11-15 09:02:08 UTC ++++ OpenSim/Common/IO.cpp +@@ -33,7 +33,7 @@ + #include + + #include "IO.h" +-#if defined(__linux__) || defined(__APPLE__) ++#if defined(__linux__) || defined(__APPLE__) || defined(__FreeBSD__) + #include + #include + #elif defined(_MSC_VER) +@@ -476,7 +476,7 @@ int IO:: + makeDir(const string &aDirName) + { + +-#if defined __linux__ || defined __APPLE__ ++#if defined __linux__ || defined __APPLE__ || defined __FreeBSD__ + return mkdir(aDirName.c_str(),S_IRWXU); + #else + return _mkdir(aDirName.c_str()); +@@ -491,7 +491,7 @@ int IO:: + chDir(const string &aDirName) + { + +-#if defined __linux__ || defined __APPLE__ ++#if defined __linux__ || defined __APPLE__ || defined __FreeBSD__ + return chdir(aDirName.c_str()); + #else + return _chdir(aDirName.c_str()); +@@ -507,7 +507,7 @@ string IO:: + getCwd() + { + char buffer[PATH_MAX]; +-#if defined __linux__ || defined __APPLE__ ++#if defined __linux__ || defined __APPLE__ || defined __FreeBSD__ + auto ptr = getcwd(buffer, PATH_MAX); (void)ptr; + #else + _getcwd(buffer, PATH_MAX); Property changes on: head/science/opensim-core/files/patch-OpenSim_Common_IO.cpp ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/science/opensim-core/pkg-descr =================================================================== --- head/science/opensim-core/pkg-descr (nonexistent) +++ head/science/opensim-core/pkg-descr (revision 485059) @@ -0,0 +1,6 @@ +OpenSim is software that lets users develop models of musculoskeletal structures +and create dynamic simulations of movement. + +It contains SimTK OpenSim C++ libraries and command-line applications. + +WWW: http://opensim.stanford.edu/ Property changes on: head/science/opensim-core/pkg-descr ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/science/opensim-core/pkg-plist =================================================================== --- head/science/opensim-core/pkg-plist (nonexistent) +++ head/science/opensim-core/pkg-plist (revision 485059) @@ -0,0 +1,349 @@ +bin/opensim-cmd +%%ETCDIR%%_buildinfo.txt +include/OpenSim/Actuators/ActiveForceLengthCurve.h +include/OpenSim/Actuators/BodyActuator.h +include/OpenSim/Actuators/ClutchedPathSpring.h +include/OpenSim/Actuators/ConstantMuscleActivation.h +include/OpenSim/Actuators/CoordinateActuator.h +include/OpenSim/Actuators/Delp1990Muscle_Deprecated.h +include/OpenSim/Actuators/FiberCompressiveForceCosPennationCurve.h +include/OpenSim/Actuators/FiberCompressiveForceLengthCurve.h +include/OpenSim/Actuators/FiberForceLengthCurve.h +include/OpenSim/Actuators/FirstOrderMuscleActivationDynamics.h +include/OpenSim/Actuators/ForceVelocityCurve.h +include/OpenSim/Actuators/ForceVelocityInverseCurve.h +include/OpenSim/Actuators/McKibbenActuator.h +include/OpenSim/Actuators/Millard2012AccelerationMuscle.h +include/OpenSim/Actuators/Millard2012EquilibriumMuscle.h +include/OpenSim/Actuators/MuscleActivationDynamics.h +include/OpenSim/Actuators/MuscleFirstOrderActivationDynamicModel.h +include/OpenSim/Actuators/MuscleFixedWidthPennationModel.h +include/OpenSim/Actuators/MuscleSecondOrderActivationDynamicModel.h +include/OpenSim/Actuators/PointActuator.h +include/OpenSim/Actuators/PointToPointActuator.h +include/OpenSim/Actuators/RegisterTypes_osimActuators.h +include/OpenSim/Actuators/RigidTendonMuscle.h +include/OpenSim/Actuators/Schutte1993Muscle_Deprecated.h +include/OpenSim/Actuators/SpringGeneralizedForce.h +include/OpenSim/Actuators/TendonForceLengthCurve.h +include/OpenSim/Actuators/Thelen2003Muscle.h +include/OpenSim/Actuators/Thelen2003Muscle_Deprecated.h +include/OpenSim/Actuators/TorqueActuator.h +include/OpenSim/Actuators/ZerothOrderMuscleActivationDynamics.h +include/OpenSim/Actuators/osimActuators.h +include/OpenSim/Actuators/osimActuatorsDLL.h +include/OpenSim/Analyses/Actuation.h +include/OpenSim/Analyses/BodyKinematics.h +include/OpenSim/Analyses/ForceReporter.h +include/OpenSim/Analyses/InducedAccelerations.h +include/OpenSim/Analyses/InducedAccelerationsSolver.h +include/OpenSim/Analyses/InverseDynamics.h +include/OpenSim/Analyses/JointReaction.h +include/OpenSim/Analyses/Kinematics.h +include/OpenSim/Analyses/MuscleAnalysis.h +include/OpenSim/Analyses/OutputReporter.h +include/OpenSim/Analyses/PointKinematics.h +include/OpenSim/Analyses/ProbeReporter.h +include/OpenSim/Analyses/RegisterTypes_osimAnalyses.h +include/OpenSim/Analyses/StatesReporter.h +include/OpenSim/Analyses/StaticOptimization.h +include/OpenSim/Analyses/StaticOptimizationTarget.h +include/OpenSim/Analyses/osimAnalyses.h +include/OpenSim/Analyses/osimAnalysesDLL.h +include/OpenSim/Common/About.h +include/OpenSim/Common/AbstractDataTable.h +include/OpenSim/Common/AbstractProperty.h +include/OpenSim/Common/Adapters.h +include/OpenSim/Common/Array.h +include/OpenSim/Common/ArrayPtrs.h +include/OpenSim/Common/CSVFileAdapter.h +include/OpenSim/Common/Component.h +include/OpenSim/Common/ComponentList.h +include/OpenSim/Common/ComponentOutput.h +include/OpenSim/Common/ComponentPath.h +include/OpenSim/Common/ComponentSocket.h +include/OpenSim/Common/Constant.h +include/OpenSim/Common/DataAdapter.h +include/OpenSim/Common/DataTable.h +include/OpenSim/Common/DebugUtilities.h +include/OpenSim/Common/DelimFileAdapter.h +include/OpenSim/Common/Event.h +include/OpenSim/Common/Exception.h +include/OpenSim/Common/FileAdapter.h +include/OpenSim/Common/Function.h +include/OpenSim/Common/FunctionAdapter.h +include/OpenSim/Common/FunctionSet.h +include/OpenSim/Common/GCVSpline.h +include/OpenSim/Common/GCVSplineSet.h +include/OpenSim/Common/IO.h +include/OpenSim/Common/LinearFunction.h +include/OpenSim/Common/Lmdif.h +include/OpenSim/Common/LoadOpenSimLibrary.h +include/OpenSim/Common/LogCallback.h +include/OpenSim/Common/LogManager.h +include/OpenSim/Common/MarkerData.h +include/OpenSim/Common/MarkerFrame.h +include/OpenSim/Common/ModelDisplayHints.h +include/OpenSim/Common/Mtx.h +include/OpenSim/Common/MultiplierFunction.h +include/OpenSim/Common/Object.h +include/OpenSim/Common/ObjectGroup.h +include/OpenSim/Common/OptimizationTarget.h +include/OpenSim/Common/Path.h +include/OpenSim/Common/PiecewiseConstantFunction.h +include/OpenSim/Common/PiecewiseLinearFunction.h +include/OpenSim/Common/PolynomialFunction.h +include/OpenSim/Common/Property.h +include/OpenSim/Common/PropertyBool.h +include/OpenSim/Common/PropertyBoolArray.h +include/OpenSim/Common/PropertyDbl.h +include/OpenSim/Common/PropertyDblArray.h +include/OpenSim/Common/PropertyDblVec.h +include/OpenSim/Common/PropertyGroup.h +include/OpenSim/Common/PropertyInt.h +include/OpenSim/Common/PropertyIntArray.h +include/OpenSim/Common/PropertyObj.h +include/OpenSim/Common/PropertyObjArray.h +include/OpenSim/Common/PropertyObjPtr.h +include/OpenSim/Common/PropertySet.h +include/OpenSim/Common/PropertyStr.h +include/OpenSim/Common/PropertyStrArray.h +include/OpenSim/Common/PropertyTable.h +include/OpenSim/Common/PropertyTransform.h +include/OpenSim/Common/Property_Deprecated.h +include/OpenSim/Common/RegisterTypes_osimCommon.h +include/OpenSim/Common/Reporter.h +include/OpenSim/Common/RootSolver.h +include/OpenSim/Common/STOFileAdapter.h +include/OpenSim/Common/Scale.h +include/OpenSim/Common/ScaleSet.h +include/OpenSim/Common/SegmentedQuinticBezierToolkit.h +include/OpenSim/Common/Set.h +include/OpenSim/Common/Signal.h +include/OpenSim/Common/SignalGenerator.h +include/OpenSim/Common/SimmIO.h +include/OpenSim/Common/SimmMacros.h +include/OpenSim/Common/SimmSpline.h +include/OpenSim/Common/Sine.h +include/OpenSim/Common/SmoothSegmentedFunction.h +include/OpenSim/Common/SmoothSegmentedFunctionFactory.h +include/OpenSim/Common/StateVector.h +include/OpenSim/Common/StepFunction.h +include/OpenSim/Common/Storage.h +include/OpenSim/Common/StorageFactory.h +include/OpenSim/Common/StorageInterface.h +include/OpenSim/Common/TRCFileAdapter.h +include/OpenSim/Common/TableSource.h +include/OpenSim/Common/TimeSeriesTable.h +include/OpenSim/Common/Units.h +include/OpenSim/Common/ValueArray.h +include/OpenSim/Common/ValueArrayDictionary.h +include/OpenSim/Common/VectorFunction.h +include/OpenSim/Common/VectorFunctionUncoupledNxN.h +include/OpenSim/Common/XMLDocument.h +include/OpenSim/Common/XYFunctionInterface.h +include/OpenSim/Common/gcvspl.h +include/OpenSim/Common/osimCommon.h +include/OpenSim/Common/osimCommonDLL.h +include/OpenSim/Common/osimCommonTemplates.h +include/OpenSim/ExampleComponents/HopperDevice.h +include/OpenSim/ExampleComponents/RegisterTypes_osimExampleComponents.h +include/OpenSim/ExampleComponents/ToyPropMyoController.h +include/OpenSim/ExampleComponents/ToyReflexController.h +include/OpenSim/ExampleComponents/osimExampleComponentsDLL.h +include/OpenSim/Lepton.h +include/OpenSim/OpenSim.h +include/OpenSim/Simulation/AssemblySolver.h +include/OpenSim/Simulation/Control/Control.h +include/OpenSim/Simulation/Control/ControlConstant.h +include/OpenSim/Simulation/Control/ControlLinear.h +include/OpenSim/Simulation/Control/ControlLinearNode.h +include/OpenSim/Simulation/Control/ControlSet.h +include/OpenSim/Simulation/Control/ControlSetController.h +include/OpenSim/Simulation/Control/Controller.h +include/OpenSim/Simulation/Control/PrescribedController.h +include/OpenSim/Simulation/Control/TrackingController.h +include/OpenSim/Simulation/CoordinateReference.h +include/OpenSim/Simulation/InverseDynamicsSolver.h +include/OpenSim/Simulation/InverseKinematicsSolver.h +include/OpenSim/Simulation/Manager/Manager.h +include/OpenSim/Simulation/MarkersReference.h +include/OpenSim/Simulation/Model/AbstractPathPoint.h +include/OpenSim/Simulation/Model/AbstractTool.h +include/OpenSim/Simulation/Model/ActivationFiberLengthMuscle.h +include/OpenSim/Simulation/Model/ActivationFiberLengthMuscle_Deprecated.h +include/OpenSim/Simulation/Model/Actuator.h +include/OpenSim/Simulation/Model/ActuatorForceProbe.h +include/OpenSim/Simulation/Model/ActuatorPowerProbe.h +include/OpenSim/Simulation/Model/Analysis.h +include/OpenSim/Simulation/Model/AnalysisSet.h +include/OpenSim/Simulation/Model/Appearance.h +include/OpenSim/Simulation/Model/Bhargava2004MuscleMetabolicsProbe.h +include/OpenSim/Simulation/Model/BodyScale.h +include/OpenSim/Simulation/Model/BodyScaleSet.h +include/OpenSim/Simulation/Model/BodySet.h +include/OpenSim/Simulation/Model/BushingForce.h +include/OpenSim/Simulation/Model/CMCActuatorSubsystem.h +include/OpenSim/Simulation/Model/ComponentSet.h +include/OpenSim/Simulation/Model/Condition.h +include/OpenSim/Simulation/Model/ConditionalPathPoint.h +include/OpenSim/Simulation/Model/ConstraintSet.h +include/OpenSim/Simulation/Model/ContactGeometry.h +include/OpenSim/Simulation/Model/ContactGeometrySet.h +include/OpenSim/Simulation/Model/ContactHalfSpace.h +include/OpenSim/Simulation/Model/ContactMesh.h +include/OpenSim/Simulation/Model/ContactSphere.h +include/OpenSim/Simulation/Model/ControllerSet.h +include/OpenSim/Simulation/Model/CoordinateLimitForce.h +include/OpenSim/Simulation/Model/CoordinateSet.h +include/OpenSim/Simulation/Model/ElasticFoundationForce.h +include/OpenSim/Simulation/Model/ExpressionBasedBushingForce.h +include/OpenSim/Simulation/Model/ExpressionBasedCoordinateForce.h +include/OpenSim/Simulation/Model/ExpressionBasedPointToPointForce.h +include/OpenSim/Simulation/Model/ExternalForce.h +include/OpenSim/Simulation/Model/ExternalLoads.h +include/OpenSim/Simulation/Model/Force.h +include/OpenSim/Simulation/Model/ForceAdapter.h +include/OpenSim/Simulation/Model/ForceSet.h +include/OpenSim/Simulation/Model/Frame.h 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