Index: head/math/Makefile =================================================================== --- head/math/Makefile (revision 483368) +++ head/math/Makefile (revision 483369) @@ -1,880 +1,881 @@ # $FreeBSD$ # COMMENT = Mathematics SUBDIR += GiNaC SUBDIR += PDL SUBDIR += R SUBDIR += R-cran-Amelia SUBDIR += R-cran-CVST SUBDIR += R-cran-ChangeAnomalyDetection SUBDIR += R-cran-DEoptimR SUBDIR += R-cran-DRR SUBDIR += R-cran-DoE.base SUBDIR += R-cran-Formula SUBDIR += R-cran-KFAS SUBDIR += R-cran-LearnBayes SUBDIR += R-cran-MCMCpack SUBDIR += R-cran-MSwM SUBDIR += R-cran-MatchIt SUBDIR += R-cran-Matching SUBDIR += R-cran-MatrixModels SUBDIR += R-cran-NMF SUBDIR += R-cran-RHmm SUBDIR += R-cran-RSvgDevice SUBDIR += R-cran-RcppArmadillo SUBDIR += R-cran-RcppEigen SUBDIR += R-cran-RcppRoll SUBDIR += R-cran-Rmpfr SUBDIR += R-cran-Rsolnp SUBDIR += R-cran-SQUAREM SUBDIR += R-cran-SparseM SUBDIR += R-cran-VGAM SUBDIR += R-cran-Zelig SUBDIR += R-cran-assertthat SUBDIR += R-cran-backports SUBDIR += R-cran-bdsmatrix SUBDIR += R-cran-car SUBDIR += R-cran-carData SUBDIR += R-cran-coda SUBDIR += R-cran-combinat SUBDIR += R-cran-conf.design SUBDIR += R-cran-ddalpha SUBDIR += R-cran-deldir SUBDIR += R-cran-dimRed SUBDIR += R-cran-dlmodeler SUBDIR += R-cran-dplyr SUBDIR += R-cran-expm SUBDIR += R-cran-forcats SUBDIR += R-cran-forecast SUBDIR += R-cran-fracdiff SUBDIR += R-cran-geepack SUBDIR += R-cran-geometry SUBDIR += R-cran-gmp SUBDIR += R-cran-gower SUBDIR += R-cran-gpclib SUBDIR += R-cran-gss SUBDIR += R-cran-gtable SUBDIR += R-cran-haven SUBDIR += R-cran-igraph SUBDIR += R-cran-influenceR SUBDIR += R-cran-inline SUBDIR += R-cran-ipred SUBDIR += R-cran-irlba SUBDIR += R-cran-labeling SUBDIR += R-cran-lava SUBDIR += R-cran-lazyeval SUBDIR += R-cran-lme4 SUBDIR += R-cran-magic SUBDIR += R-cran-maxLik SUBDIR += R-cran-mcmc SUBDIR += R-cran-memisc SUBDIR += R-cran-minqa SUBDIR += R-cran-miscTools SUBDIR += R-cran-mvtnorm SUBDIR += R-cran-nloptr SUBDIR += R-cran-nnls SUBDIR += R-cran-nortest SUBDIR += R-cran-numDeriv SUBDIR += R-cran-numbers SUBDIR += R-cran-outliers SUBDIR += R-cran-partitions SUBDIR += R-cran-pbkrtest SUBDIR += R-cran-pls SUBDIR += R-cran-polynom SUBDIR += R-cran-prodlim SUBDIR += R-cran-psych SUBDIR += R-cran-quadprog SUBDIR += R-cran-qualityTools SUBDIR += R-cran-quantreg SUBDIR += R-cran-recipes SUBDIR += R-cran-rgenoud SUBDIR += R-cran-robustbase SUBDIR += R-cran-sandwich SUBDIR += R-cran-sf SUBDIR += R-cran-sm SUBDIR += R-cran-sp SUBDIR += R-cran-spData SUBDIR += R-cran-spdep SUBDIR += R-cran-sspir SUBDIR += R-cran-stabledist SUBDIR += R-cran-survey SUBDIR += R-cran-truncnorm SUBDIR += R-cran-units SUBDIR += R-cran-uroot SUBDIR += R-cran-xts SUBDIR += R-cran-zoo SUBDIR += SCIP SUBDIR += SoPlex SUBDIR += aamath SUBDIR += abakus SUBDIR += abs SUBDIR += acalc SUBDIR += add SUBDIR += adept SUBDIR += adol-c SUBDIR += algae SUBDIR += alglib SUBDIR += algotutor SUBDIR += alt-ergo SUBDIR += amath SUBDIR += ambit SUBDIR += analitza SUBDIR += analitza-kde4 SUBDIR += ann SUBDIR += antic SUBDIR += apc SUBDIR += arb SUBDIR += aribas SUBDIR += armadillo SUBDIR += arpack++ SUBDIR += arpack-ng SUBDIR += aspcud SUBDIR += asymptote SUBDIR += atlas SUBDIR += biggles SUBDIR += blacs SUBDIR += blas SUBDIR += blaze SUBDIR += blazeiterative SUBDIR += blis SUBDIR += blitz++ SUBDIR += blocksolve95 SUBDIR += bsdnt SUBDIR += cadabra2 SUBDIR += calc SUBDIR += calcoo SUBDIR += calctool SUBDIR += cantor SUBDIR += cantor-kde4 SUBDIR += cbc SUBDIR += cblas SUBDIR += ccmath SUBDIR += cddlib SUBDIR += ceres-solver SUBDIR += cgal SUBDIR += cgl SUBDIR += chaco SUBDIR += chryzodus SUBDIR += clasp SUBDIR += clblas SUBDIR += clblast SUBDIR += clfft SUBDIR += cln SUBDIR += cloog SUBDIR += clp SUBDIR += clrng SUBDIR += cminpack SUBDIR += cmlib SUBDIR += coinmp SUBDIR += concorde SUBDIR += convertall SUBDIR += coq SUBDIR += crlibm SUBDIR += cryptominisat SUBDIR += cvc3 SUBDIR += cvc4 SUBDIR += deal.ii SUBDIR += diehard SUBDIR += dieharder SUBDIR += djbfft SUBDIR += drgeo + SUBDIR += dsdp SUBDIR += dynare SUBDIR += e SUBDIR += ecos SUBDIR += edenmath SUBDIR += eigen2 SUBDIR += eigen3 SUBDIR += eispack SUBDIR += elpa SUBDIR += emc2 SUBDIR += ent SUBDIR += entropy SUBDIR += eprover SUBDIR += ess SUBDIR += eukleides SUBDIR += eval SUBDIR += facile SUBDIR += fann SUBDIR += fflas-ffpack SUBDIR += fftw SUBDIR += fftw-float SUBDIR += fftw3 SUBDIR += fftw3-float SUBDIR += fftw3-long SUBDIR += fftw3-quad SUBDIR += fityk SUBDIR += flann SUBDIR += flint2 SUBDIR += form SUBDIR += fpc-fftw SUBDIR += fpc-gmp SUBDIR += fpc-numlib SUBDIR += fricas SUBDIR += fxt SUBDIR += g2o SUBDIR += galculator SUBDIR += gambit SUBDIR += gap SUBDIR += gau2grid SUBDIR += gdcalc SUBDIR += geg SUBDIR += geogebra SUBDIR += geonext SUBDIR += gexpr SUBDIR += ggobi SUBDIR += giacxcas SUBDIR += givaro SUBDIR += gkmap SUBDIR += glgraph SUBDIR += glm SUBDIR += glpk SUBDIR += glucose SUBDIR += gmm++ SUBDIR += gmp SUBDIR += gmp-ecm SUBDIR += gnome-calculator SUBDIR += gnubc SUBDIR += gnumeric SUBDIR += gnuplot SUBDIR += gnuplot-lite SUBDIR += gnuplot-tex-extras SUBDIR += goblin SUBDIR += gotoblas SUBDIR += grace SUBDIR += gracetmpl SUBDIR += graphthing SUBDIR += gretl SUBDIR += gri SUBDIR += gringo SUBDIR += grpn SUBDIR += gsl SUBDIR += hexcalc SUBDIR += hs-Agda SUBDIR += hs-Agda-stdlib SUBDIR += hs-NumInstances SUBDIR += hs-adjunctions SUBDIR += hs-categories SUBDIR += hs-comonad SUBDIR += hs-contravariant SUBDIR += hs-data-lens SUBDIR += hs-data-lens-template SUBDIR += hs-distributive SUBDIR += hs-erf SUBDIR += hs-fixed SUBDIR += hs-half SUBDIR += hs-ieee754 SUBDIR += hs-integer-logarithms SUBDIR += hs-kan-extensions SUBDIR += hs-math-functions SUBDIR += hs-mwc-random SUBDIR += hs-pointed SUBDIR += hs-probability SUBDIR += hs-semigroupoids SUBDIR += hs-semigroups SUBDIR += hs-statistics SUBDIR += hs-vector-space SUBDIR += igraph SUBDIR += intervaltree SUBDIR += ipopt SUBDIR += ised SUBDIR += jacal SUBDIR += jags SUBDIR += jakarta-commons-math3 SUBDIR += jama SUBDIR += jeuclid SUBDIR += jlatexmath SUBDIR += jsmath-fonts SUBDIR += jtransforms SUBDIR += jts SUBDIR += kalgebra SUBDIR += kalgebra-kde4 SUBDIR += kbruch SUBDIR += kbruch-kde4 SUBDIR += kcalc SUBDIR += kcalc-kde4 SUBDIR += kig SUBDIR += kig-kde4 SUBDIR += kktdirect SUBDIR += kmplot SUBDIR += kmplot-kde4 SUBDIR += labplot SUBDIR += lambda SUBDIR += lapack SUBDIR += lapack++ SUBDIR += lapack95 SUBDIR += lapacke SUBDIR += laspack SUBDIR += ldouble SUBDIR += lean SUBDIR += levmar SUBDIR += libRmath SUBDIR += libflame SUBDIR += liblbfgs SUBDIR += libmesh SUBDIR += libmissing SUBDIR += libocas SUBDIR += liborigin SUBDIR += libpgmath SUBDIR += libpoly SUBDIR += libqalculate SUBDIR += libranlip SUBDIR += librsb SUBDIR += libtommath SUBDIR += libtsnnls SUBDIR += libxls SUBDIR += libxlsxwriter SUBDIR += libxsmm SUBDIR += linpack SUBDIR += lll_spect SUBDIR += lp_solve SUBDIR += lrng SUBDIR += ltl SUBDIR += ltl2ba SUBDIR += lybniz SUBDIR += mate-calc SUBDIR += math77 SUBDIR += mathgl SUBDIR += mathmod SUBDIR += mathomatic SUBDIR += matio SUBDIR += matlab-installer SUBDIR += maxima SUBDIR += mbasecalc SUBDIR += metis SUBDIR += metis-edf SUBDIR += metis4 SUBDIR += mfem SUBDIR += mingw32-libgmp SUBDIR += minisat SUBDIR += miracl SUBDIR += mkl-dnn SUBDIR += mlpack SUBDIR += moo SUBDIR += mosesdecoder SUBDIR += mpc SUBDIR += mpexpr SUBDIR += mpfr SUBDIR += mpir SUBDIR += mppp SUBDIR += mprime SUBDIR += msieve SUBDIR += mtrxmath SUBDIR += multichoose SUBDIR += mumps SUBDIR += mumps-edf SUBDIR += mumps-mpich SUBDIR += muparser SUBDIR += nanoflann SUBDIR += naturalmath SUBDIR += nauty SUBDIR += ndiff SUBDIR += newmat SUBDIR += nfft SUBDIR += ngraph SUBDIR += nlopt SUBDIR += ntl SUBDIR += numdiff SUBDIR += nyh-hoc SUBDIR += ocaml-ocamlgraph SUBDIR += ocaml-zarith SUBDIR += ocamlgsl SUBDIR += octave SUBDIR += octave-forge SUBDIR += octave-forge-actuarial SUBDIR += octave-forge-audio SUBDIR += octave-forge-base SUBDIR += octave-forge-bim SUBDIR += octave-forge-bioinfo SUBDIR += octave-forge-bsltl SUBDIR += octave-forge-cgi SUBDIR += octave-forge-civil-engineering SUBDIR += octave-forge-control SUBDIR += octave-forge-data-smoothing SUBDIR += octave-forge-database SUBDIR += octave-forge-dataframe SUBDIR += octave-forge-dicom SUBDIR += octave-forge-divand SUBDIR += octave-forge-doctest SUBDIR += octave-forge-econometrics SUBDIR += octave-forge-engine SUBDIR += octave-forge-fenv SUBDIR += octave-forge-financial SUBDIR += octave-forge-fits SUBDIR += octave-forge-fl-core SUBDIR += octave-forge-fpl SUBDIR += octave-forge-fuzzy-logic-toolkit SUBDIR += octave-forge-ga SUBDIR += octave-forge-general SUBDIR += octave-forge-generate_html SUBDIR += octave-forge-geometry SUBDIR += octave-forge-gnuplot SUBDIR += octave-forge-gsl SUBDIR += octave-forge-ident SUBDIR += octave-forge-image SUBDIR += octave-forge-informationtheory SUBDIR += octave-forge-integration SUBDIR += octave-forge-interval SUBDIR += octave-forge-io SUBDIR += octave-forge-irsa SUBDIR += octave-forge-level-set SUBDIR += octave-forge-linear-algebra SUBDIR += octave-forge-lssa SUBDIR += octave-forge-ltfat SUBDIR += octave-forge-mapping SUBDIR += octave-forge-mechanics SUBDIR += octave-forge-miscellaneous SUBDIR += octave-forge-missing-functions SUBDIR += octave-forge-msh SUBDIR += octave-forge-multicore SUBDIR += octave-forge-mvn SUBDIR += octave-forge-nan SUBDIR += octave-forge-ncarray SUBDIR += octave-forge-netcdf SUBDIR += octave-forge-nlwing2 SUBDIR += octave-forge-nnet SUBDIR += octave-forge-nurbs SUBDIR += octave-forge-oct2mat SUBDIR += octave-forge-octclip SUBDIR += octave-forge-octproj SUBDIR += octave-forge-odebvp SUBDIR += octave-forge-optics SUBDIR += octave-forge-optim SUBDIR += octave-forge-optiminterp SUBDIR += octave-forge-outliers SUBDIR += octave-forge-parallel SUBDIR += octave-forge-pdb SUBDIR += octave-forge-plot SUBDIR += octave-forge-quaternion SUBDIR += octave-forge-queueing SUBDIR += octave-forge-secs1d SUBDIR += octave-forge-secs2d SUBDIR += octave-forge-secs3d SUBDIR += octave-forge-signal SUBDIR += octave-forge-simp SUBDIR += octave-forge-sockets SUBDIR += octave-forge-sparsersb SUBDIR += octave-forge-specfun SUBDIR += octave-forge-special-matrix SUBDIR += octave-forge-splines SUBDIR += octave-forge-statistics SUBDIR += octave-forge-stk SUBDIR += octave-forge-strings SUBDIR += octave-forge-struct SUBDIR += octave-forge-symband SUBDIR += octave-forge-symbolic SUBDIR += octave-forge-tcl-octave SUBDIR += octave-forge-tisean SUBDIR += octave-forge-tsa SUBDIR += octave-forge-video SUBDIR += octave-forge-zenity SUBDIR += octave-forge-zeromq SUBDIR += ogdf SUBDIR += oleo SUBDIR += openblas SUBDIR += openfst SUBDIR += openlibm SUBDIR += openmesh SUBDIR += opensolaris-libm SUBDIR += orpie SUBDIR += p5-AI-DecisionTree SUBDIR += p5-AI-Genetic SUBDIR += p5-AI-NeuralNet-BackProp SUBDIR += p5-AI-Perceptron SUBDIR += p5-Algorithm-Combinatorics SUBDIR += p5-Algorithm-CurveFit SUBDIR += p5-Algorithm-KMeans SUBDIR += p5-Algorithm-Munkres SUBDIR += p5-Bit-ShiftReg SUBDIR += p5-Bit-Vector SUBDIR += p5-Bit-Vector-Minimal SUBDIR += p5-CAD-Calc SUBDIR += p5-Chart-Math-Axis SUBDIR += p5-Data-Float SUBDIR += p5-Date-Handler SUBDIR += p5-GIS-Distance SUBDIR += p5-GIS-Distance-Fast SUBDIR += p5-GIS-Distance-Lite SUBDIR += p5-Geo-Coordinates-UTM SUBDIR += p5-Geo-Distance SUBDIR += p5-Geo-Distance-XS SUBDIR += p5-Graph SUBDIR += p5-Math-Algebra-Symbols SUBDIR += p5-Math-Base36 SUBDIR += p5-Math-Base85 SUBDIR += p5-Math-BaseCalc SUBDIR += p5-Math-BaseCnv SUBDIR += p5-Math-Bezier SUBDIR += p5-Math-Bezier-Convert SUBDIR += p5-Math-BigInt SUBDIR += p5-Math-BigInt-FastCalc SUBDIR += p5-Math-BigInt-GMP SUBDIR += p5-Math-BigInt-Lite SUBDIR += p5-Math-BigInt-Pari SUBDIR += p5-Math-BigRat SUBDIR += p5-Math-CDF SUBDIR += p5-Math-Calc-Units SUBDIR += p5-Math-Cephes SUBDIR += p5-Math-Combinatorics SUBDIR += p5-Math-Complex SUBDIR += p5-Math-ConvexHull SUBDIR += p5-Math-Currency SUBDIR += p5-Math-Derivative SUBDIR += p5-Math-Evol SUBDIR += p5-Math-Expr SUBDIR += p5-Math-FFT SUBDIR += p5-Math-FixedPrecision SUBDIR += p5-Math-Fleximal SUBDIR += p5-Math-GMP SUBDIR += p5-Math-GMPf SUBDIR += p5-Math-GMPq SUBDIR += p5-Math-GMPz SUBDIR += p5-Math-GSL SUBDIR += p5-Math-Geometry SUBDIR += p5-Math-Geometry-Planar SUBDIR += p5-Math-Geometry-Planar-GPC SUBDIR += p5-Math-Geometry-Planar-GPC-PolygonXS SUBDIR += p5-Math-Geometry-Planar-Offset SUBDIR += p5-Math-Geometry-Voronoi SUBDIR += p5-Math-Gradient SUBDIR += p5-Math-Int128 SUBDIR += p5-Math-Int64 SUBDIR += p5-Math-Interpolate SUBDIR += p5-Math-Intersection-StraightLine SUBDIR += p5-Math-Logic SUBDIR += p5-Math-MPC SUBDIR += p5-Math-MPFR SUBDIR += p5-Math-Matrix SUBDIR += p5-Math-MatrixReal SUBDIR += p5-Math-NumberCruncher SUBDIR += p5-Math-Pari SUBDIR += p5-Math-Polygon SUBDIR += p5-Math-Polygon-Tree SUBDIR += p5-Math-Polynomial-Solve SUBDIR += p5-Math-Prime-Util SUBDIR += p5-Math-Prime-Util-GMP SUBDIR += p5-Math-Prime-XS SUBDIR += p5-Math-ProvablePrime SUBDIR += p5-Math-RPN SUBDIR += p5-Math-Random SUBDIR += p5-Math-Random-ISAAC SUBDIR += p5-Math-Random-ISAAC-XS SUBDIR += p5-Math-Random-MT SUBDIR += p5-Math-Random-MT-Auto SUBDIR += p5-Math-Random-OO SUBDIR += p5-Math-Random-Secure SUBDIR += p5-Math-RandomOrg SUBDIR += p5-Math-Round SUBDIR += p5-Math-Round-Var SUBDIR += p5-Math-Sequence SUBDIR += p5-Math-Series SUBDIR += p5-Math-SigFigs SUBDIR += p5-Math-SimpleVariable SUBDIR += p5-Math-Spline SUBDIR += p5-Math-String SUBDIR += p5-Math-Symbolic SUBDIR += p5-Math-Symbolic-Custom-CCompiler SUBDIR += p5-Math-Symbolic-Custom-Contains SUBDIR += p5-Math-Symbolic-Custom-ErrorPropagation SUBDIR += p5-Math-Symbolic-Custom-LaTeXDumper SUBDIR += p5-Math-Symbolic-Custom-Pattern SUBDIR += p5-Math-Symbolic-Custom-Simplification SUBDIR += p5-Math-Symbolic-Custom-Transformation SUBDIR += p5-Math-SymbolicX-BigNum SUBDIR += p5-Math-SymbolicX-Complex SUBDIR += p5-Math-SymbolicX-Error SUBDIR += p5-Math-SymbolicX-Inline SUBDIR += p5-Math-SymbolicX-NoSimplification SUBDIR += p5-Math-SymbolicX-ParserExtensionFactory SUBDIR += p5-Math-SymbolicX-Statistics-Distributions SUBDIR += p5-Math-TrulyRandom SUBDIR += p5-Math-Units SUBDIR += p5-Math-Utils SUBDIR += p5-Math-Vec SUBDIR += p5-Math-VecStat SUBDIR += p5-Math-VectorReal SUBDIR += p5-NetCDF SUBDIR += p5-Number-Compare SUBDIR += p5-Number-Fraction SUBDIR += p5-Number-Misc SUBDIR += p5-Number-Uncertainty SUBDIR += p5-Number-WithError SUBDIR += p5-Number-WithError-LaTeX SUBDIR += p5-Parse-Range SUBDIR += p5-Roman SUBDIR += p5-Set-IntSpan SUBDIR += p5-Set-IntSpan-Fast SUBDIR += p5-Set-IntSpan-Fast-XS SUBDIR += p5-Set-Partition SUBDIR += p5-Set-Window SUBDIR += p5-Statistics-Basic SUBDIR += p5-Statistics-Benford SUBDIR += p5-Statistics-CaseResampling SUBDIR += p5-Statistics-ChiSquare SUBDIR += p5-Statistics-Contingency SUBDIR += p5-Statistics-Descriptive SUBDIR += p5-Statistics-Descriptive-Discrete SUBDIR += p5-Statistics-Distributions SUBDIR += p5-Statistics-Forecast SUBDIR += p5-Statistics-Frequency SUBDIR += p5-Statistics-LTU SUBDIR += p5-Statistics-LineFit SUBDIR += p5-Statistics-Lite SUBDIR += p5-Statistics-OLS SUBDIR += p5-Statistics-R SUBDIR += p5-Statistics-Regression SUBDIR += p5-Statistics-TTest SUBDIR += p5-Task-Math-Symbolic SUBDIR += p5-Text-AsciiTeX SUBDIR += p5-bignum SUBDIR += pantheon-calculator SUBDIR += pari SUBDIR += parmetis SUBDIR += parmgridgen SUBDIR += pdal SUBDIR += pear-Math_BigInteger SUBDIR += pear-Math_Combinatorics SUBDIR += pecl-big_int SUBDIR += pecl-bitset SUBDIR += pecl-bitset2 SUBDIR += pecl-stats SUBDIR += pecl-stats2 SUBDIR += pecl-trader SUBDIR += petiga SUBDIR += php56-bcmath SUBDIR += php56-gmp SUBDIR += php70-bcmath SUBDIR += php70-gmp SUBDIR += php71-bcmath SUBDIR += php71-gmp SUBDIR += php72-bcmath SUBDIR += php72-gmp SUBDIR += php73-bcmath SUBDIR += php73-gmp SUBDIR += physcalc SUBDIR += picosat SUBDIR += piranha SUBDIR += plman SUBDIR += ploticus SUBDIR += ploticus-nox11 SUBDIR += plplot SUBDIR += plplot-ada SUBDIR += primegen SUBDIR += primme SUBDIR += prng SUBDIR += proofgeneral SUBDIR += pspp SUBDIR += pure-mpfr SUBDIR += pure-rational SUBDIR += py-CyLP SUBDIR += py-Diofant SUBDIR += py-GridDataFormats SUBDIR += py-PuLP SUBDIR += py-PyMetis SUBDIR += py-PySCIPOpt SUBDIR += py-PyWavelets SUBDIR += py-Pyomo SUBDIR += py-algopy SUBDIR += py-altgraph SUBDIR += py-apgl SUBDIR += py-basemap SUBDIR += py-basemap-data SUBDIR += py-bitmath SUBDIR += py-bitvector SUBDIR += py-bottleneck SUBDIR += py-cdecimal SUBDIR += py-chaospy SUBDIR += py-colormath SUBDIR += py-cryptominisat SUBDIR += py-cvxopt SUBDIR += py-cyipopt SUBDIR += py-fastcluster SUBDIR += py-fastdtw SUBDIR += py-ffc SUBDIR += py-fiat SUBDIR += py-fpconst SUBDIR += py-gato SUBDIR += py-gau2grid SUBDIR += py-gimmik SUBDIR += py-gmpy SUBDIR += py-gmpy2 SUBDIR += py-gnuplot SUBDIR += py-graphillion SUBDIR += py-igakit SUBDIR += py-igraph SUBDIR += py-intspan SUBDIR += py-keras SUBDIR += py-levmar SUBDIR += py-libpoly SUBDIR += py-luminol SUBDIR += py-mathdom SUBDIR += py-matplotlib SUBDIR += py-mpmath SUBDIR += py-munkres SUBDIR += py-networkx SUBDIR += py-numarray SUBDIR += py-numeric SUBDIR += py-numexpr SUBDIR += py-numpy SUBDIR += py-nzmath SUBDIR += py-pandas SUBDIR += py-pandas-datareader SUBDIR += py-patsy SUBDIR += py-permutation SUBDIR += py-petsc4py SUBDIR += py-piranha SUBDIR += py-plastex SUBDIR += py-primme SUBDIR += py-probstat SUBDIR += py-pyFFTW SUBDIR += py-pyasp SUBDIR += py-pybloom SUBDIR += py-pycosat SUBDIR += py-pygsl SUBDIR += py-pygslodeiv2 SUBDIR += py-pyhull SUBDIR += py-pyipopt SUBDIR += py-pymc SUBDIR += py-pymc3 SUBDIR += py-pyneqsys SUBDIR += py-pynleq2 SUBDIR += py-pyodeint SUBDIR += py-pyodesys SUBDIR += py-pysparse SUBDIR += py-pysym SUBDIR += py-pyvtk SUBDIR += py-random2 SUBDIR += py-rapi SUBDIR += py-roman SUBDIR += py-rpy2 SUBDIR += py-scientific SUBDIR += py-scikit-umfpack SUBDIR += py-seaborn SUBDIR += py-secp256k1 SUBDIR += py-simhash SUBDIR += py-slepc4py SUBDIR += py-spectral SUBDIR += py-spot SUBDIR += py-statsmodels SUBDIR += py-svgmath SUBDIR += py-sym SUBDIR += py-symcxx SUBDIR += py-symeig SUBDIR += py-sympy SUBDIR += py-theano SUBDIR += py-ufl SUBDIR += py-uncertainties SUBDIR += py-viper SUBDIR += py-yt SUBDIR += py-z3-solver SUBDIR += qalculate SUBDIR += qd SUBDIR += qhull SUBDIR += qhull5 SUBDIR += qrupdate SUBDIR += qtiplot SUBDIR += qtiplot-doc SUBDIR += qtoctave SUBDIR += qwtplot3d-qt4 SUBDIR += randlib SUBDIR += rapid SUBDIR += reduce SUBDIR += reduce-psl SUBDIR += reed-solomon SUBDIR += rexx-regmath SUBDIR += rkward-kde SUBDIR += rngstreams SUBDIR += rocs SUBDIR += rocs-kde4 SUBDIR += rpcalc SUBDIR += rpy SUBDIR += rubygem-algebra SUBDIR += rubygem-expression_parser SUBDIR += rubygem-fftw3 SUBDIR += rubygem-mathn SUBDIR += rubygem-narray SUBDIR += rubygem-narray_miss SUBDIR += rubygem-numru-misc SUBDIR += rubygem-numru-units SUBDIR += rubygem-rb-gsl SUBDIR += saga SUBDIR += sage SUBDIR += sc SUBDIR += sc-im SUBDIR += scalapack SUBDIR += scilab SUBDIR += scilab-toolbox-swt SUBDIR += sdpa SUBDIR += sdpara SUBDIR += secp256k1 SUBDIR += sfft SUBDIR += sfst SUBDIR += simd-viterbi SUBDIR += singular SUBDIR += slatec SUBDIR += sleef SUBDIR += slepc SUBDIR += slgrace SUBDIR += snns SUBDIR += solitaire SUBDIR += sound-of-sorting SUBDIR += spar SUBDIR += spblas SUBDIR += spectra SUBDIR += speedcrunch SUBDIR += spooles SUBDIR += spooles-mpich SUBDIR += spot SUBDIR += stp SUBDIR += suitesparse SUBDIR += sundials SUBDIR += superlu SUBDIR += superlu_mt SUBDIR += surf SUBDIR += symmetrica SUBDIR += tablix SUBDIR += taucs SUBDIR += tblis SUBDIR += testu01 SUBDIR += tetgen SUBDIR += timbl SUBDIR += tmv SUBDIR += tomsfastmath SUBDIR += topaz SUBDIR += triangle SUBDIR += trlan SUBDIR += truthtable SUBDIR += tvmet SUBDIR += ump SUBDIR += units SUBDIR += unuran SUBDIR += viennacl SUBDIR += vowpal_wabbit SUBDIR += vtk5 SUBDIR += vtk5-data SUBDIR += vtk6 SUBDIR += vtk8 SUBDIR += wcalc SUBDIR += wfmath SUBDIR += why3 SUBDIR += wingz3 SUBDIR += wxMaxima SUBDIR += x12arima SUBDIR += xblas SUBDIR += xfce4-calculator-plugin SUBDIR += xgraph SUBDIR += xlapack SUBDIR += xldlas SUBDIR += xlife++ SUBDIR += xplot SUBDIR += xppaut SUBDIR += xspread SUBDIR += xtensor SUBDIR += yacas SUBDIR += yices SUBDIR += z3 SUBDIR += zegrapher SUBDIR += zimpl .include Index: head/math/dsdp/Makefile =================================================================== --- head/math/dsdp/Makefile (nonexistent) +++ head/math/dsdp/Makefile (revision 483369) @@ -0,0 +1,47 @@ +# $FreeBSD$ + +PORTNAME= dsdp +DISTVERSION= 5.8 +CATEGORIES= math +MASTER_SITES= https://www.mcs.anl.gov/hs/software/${PORTNAME:tu}/ +DISTNAME= ${PORTNAME:tu}${DISTVERSION} + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Implementation of interior-point method for semidefinite programming + +LICENSE= DSDP_LICENSE +LICENSE_NAME= DSDP License +LICENSE_FILE= ${WRKSRC}/dsdp-license +LICENSE_PERMS= auto-accept dist-mirror dist-sell pkg-mirror pkg-sell # do anything as long as the original copyright notice is retained + +LIB_DEPENDS= libblas.so:math/blas \ + liblapack.so:math/lapack + +USES= fortran gmake localbase:ldflags +USE_LDCONFIG= yes + +ALL_TARGET= all oshared all oshared + +BINARY_ALIAS= make=${GMAKE} gcc=${CC} +MAKE_ENV= DSDPROOT=${WRKSRC} SH_LD="${CC} -shared" +CFLAGS+= -fPIC + +PLIST_FILES= bin/dsdp5 \ + include/dsdp/dsdp5.h \ + include/dsdp/dsdpbasictypes.h \ + include/dsdp/dsdplapack.h \ + include/dsdp/dsdpmem.h \ + include/dsdp/dsdpsys.h \ + lib/libdsdp.so + +do-build: # the build fails to build all binaries without being called twice due to makefile convolution + @cd ${WRKSRC} && ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} ${ALL_TARGET} + @cd ${WRKSRC} && ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} ${ALL_TARGET} + +do-install: + @${MKDIR} ${STAGEDIR}${PREFIX}/include/dsdp + ${INSTALL_PROGRAM} ${WRKSRC}/bin/dsdp5 ${STAGEDIR}${PREFIX}/bin + ${INSTALL_LIB} ${WRKSRC}/lib/libdsdp.so ${STAGEDIR}${PREFIX}/lib + ${INSTALL_DATA} ${WRKSRC}/include/*.h ${STAGEDIR}${PREFIX}/include/dsdp + +.include Property changes on: head/math/dsdp/Makefile ___________________________________________________________________ Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:keywords ## -0,0 +1 ## +FreeBSD=%H \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/math/dsdp/distinfo =================================================================== --- head/math/dsdp/distinfo (nonexistent) +++ head/math/dsdp/distinfo (revision 483369) @@ -0,0 +1,3 @@ +TIMESTAMP = 1540788627 +SHA256 (DSDP5.8.tar.gz) = 26aa624525a636de272c0b329e2dfd01a0d5b7827f1c1c76f393d71e37dead70 +SIZE (DSDP5.8.tar.gz) = 2608518 Property changes on: head/math/dsdp/distinfo ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/math/dsdp/files/patch-Makefile =================================================================== --- head/math/dsdp/files/patch-Makefile (nonexistent) +++ head/math/dsdp/files/patch-Makefile (revision 483369) @@ -0,0 +1,14 @@ +--- Makefile.orig 2005-10-21 19:31:14 UTC ++++ Makefile +@@ -53,8 +53,8 @@ oshared: + -@${RM} tmp; \ + mkdir tmp; \ + cd tmp; \ +- echo "building ${DSDPLIBSO}"; \ +- ${AR} x ${DSDPLIB} ;\ +- ${SH_LD} ${DSDPLIBSO} *.o -o ${DSDPLIBSO}; \ ++ echo "building ${DSDPLIBSO}" ++ ${AR} x ${DSDPLIB} ++ $(CC) -shared $(LDFLAGS) -llapack -lblas -lm *.o -o ${DSDPLIBSO}; \ + cd ../ ; \ + ${RM} tmp Property changes on: head/math/dsdp/files/patch-Makefile ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/math/dsdp/files/patch-examples_Makefile =================================================================== --- head/math/dsdp/files/patch-examples_Makefile (nonexistent) +++ head/math/dsdp/files/patch-examples_Makefile (revision 483369) @@ -0,0 +1,67 @@ +--- examples/Makefile.orig 2005-10-21 19:31:14 UTC ++++ examples/Makefile +@@ -7,31 +7,31 @@ include ../make.include + EXAMPLE_LIBS = ${DSDPLIB} ${LAPACKBLAS} + + dsdp: exinfo clean +- ${MEX} -I${DSDPROOT}/include dsdp.c ${DSDPLIB}; +- ${MV} dsdp.mex* ${DSDPMATLABDIR} ++ #${MEX} -I${DSDPROOT}/include dsdp.c ${DSDPLIB}; ++ #${MV} dsdp.mex* ${DSDPMATLABDIR} + + dsdpsdpa: exinfo clean readsdpa.o +- ${CLINKER} readsdpa.o ${EXAMPLE_LIBS} -o dsdp5 ++ ${CLINKER} ${LDFLAGS} readsdpa.o ${EXAMPLE_LIBS} -o dsdp5 + ${MV} dsdp5 ${EXECDIR} + ${RM} readsdpa.o + + maxcut: exinfo clean maxcut.o +- ${CLINKER} -o maxcut maxcut.o ${EXAMPLE_LIBS} ++ ${CLINKER} ${LDFLAGS} -o maxcut maxcut.o ${EXAMPLE_LIBS} + ${MV} maxcut ${EXECDIR} + ${RM} maxcut.o + + stable: exinfo clean stable.o +- ${CLINKER} -o stable stable.o ${EXAMPLE_LIBS} ++ ${CLINKER} ${LDFLAGS} -o stable stable.o ${EXAMPLE_LIBS} + ${MV} stable ${EXECDIR} + ${RM} stable.o + + color: exinfo clean color.o +- ${CLINKER} -o color color.o ${EXAMPLE_LIBS} ++ ${CLINKER} ${LDFLAGS} -o color color.o ${EXAMPLE_LIBS} + ${MV} color ${EXECDIR} + ${RM} color.o + + theta: exinfo clean theta.o +- ${CLINKER} -o theta theta.o ${EXAMPLE_LIBS} ++ ${CLINKER} ${LDFLAGS} -o theta theta.o ${EXAMPLE_LIBS} + ${MV} theta ${EXECDIR} + ${RM} theta.o + +@@ -43,18 +43,18 @@ copysrc: + + # On most Linux/Unix machines + dsdpagain: copysrc +- ${MEX} -DDSDPMATLAB -DDSDP_TIME dsdp.c allc/*.c +- ${MV} dsdp.mex* ${DSDPMATLABDIR} +- make clean; ++ #${MEX} -DDSDPMATLAB -DDSDP_TIME dsdp.c allc/*.c ++ #${MV} dsdp.mex* ${DSDPMATLABDIR} ++ #make clean; + + # On a Windows Machine + dsdpagain2: copysrc +- ${MEX} -DDSDPMATLAB -DDSDP_MS_TIME -DNOUNDERBLAS dsdp.c allc/*.c +- ${MV} dsdp.mex* ${DSDPMATLABDIR} +- make clean; ++ #${MEX} -DDSDPMATLAB -DDSDP_MS_TIME -DNOUNDERBLAS dsdp.c allc/*.c ++ #${MV} dsdp.mex* ${DSDPMATLABDIR} ++ #make clean; + + sdpaagain: copysrc +- ${CC} -O3 -DDSDP_TIME readsdpa.c allc/*.c ${LAPACKBLAS} -o dsdp5 ++ ${CC} $(CFLAGS) -DDSDP_TIME readsdpa.c allc/*.c ${LAPACKBLAS} -o dsdp5 + ${MV} dsdp5 ${EXECDIR} + make clean; + Property changes on: head/math/dsdp/files/patch-examples_Makefile ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/math/dsdp/files/patch-make.include =================================================================== --- head/math/dsdp/files/patch-make.include (nonexistent) +++ head/math/dsdp/files/patch-make.include (revision 483369) @@ -0,0 +1,47 @@ +--- make.include.orig 2005-10-21 19:31:14 UTC ++++ make.include +@@ -21,7 +21,7 @@ CC = gcc + + # STEP 3a: Compiler Optimization. You should probably add a -On where + # n is the maximum optimization allowed by your C compiler. +-OPTFLAGS = -O3 ++OPTFLAGS = + #OPTFLAGS = /O2 + + # STEP 3b: Add timing support by uncommenting one of the following lines. +@@ -43,7 +43,7 @@ DSDPCFLAGS = + + + # STEP 4. Set Linker and FLAGS: Link the DSDP library to application +-CFLAGS = ${OPTFLAGS} -I. -I${DSDPROOT}/include ${DSDPCFLAGS} ++CFLAGS += ${OPTFLAGS} -I. -I${DSDPROOT}/include ${DSDPCFLAGS} + CLINKER = ${CC} ${OPTFLAGS} + #CLINKER = ${CXX} ${OPTFLAGS} -static + #CLINKER = link /out:dsdp5.exe +@@ -55,7 +55,7 @@ CLINKER = ${CC} ${OPTFLAGS} + # Not needed to compile library or matlab executable + # Needed to link DSDP library to the driver ( read SDPA files, maxcut example, ...) + # Also include the math library and other libraries needed to link the BLAS to the C files that call them. +-LAPACKBLAS = -llapack -lblas -lg2c -lm ++LAPACKBLAS = -llapack -lblas -lm + #LAPACKBLAS = -L/usr/lib/ -llapack -lblas -lg2c -lm + #LAPACKBLAS = -L/home/benson/ATLAS/Linux_P4SSE2/lib -llapack -lcblas -lf77blas -latlas -lg2c -lm + #LAPACKBLAS = -L/sandbox/benson/ATLAS-3.6/lib/Linux_P4SSE2 -llapack -lcblas -lf77blas -latlas -lg2c -lm +@@ -79,7 +79,7 @@ EXECDIR = ${DSDPROOT}/bin/ + + # STEP 7 SET Operating system commands + # Other build information, archive, remove, move, copy +-ARCH = ar cr ++ARCHX = ar cr + RANLIB = ranlib + #RANLIB = echo + RM = rm -f +@@ -90,7 +90,7 @@ DD = ./ + PP = ../ + + dsdplib: ${DSDPOBJ} +- ${ARCH} ${DSDPLIB} ${DSDPOBJ} ++ ${ARCHX} ${DSDPLIB} ${DSDPOBJ} + ${RANLIB} ${DSDPLIB} + make clean + Property changes on: head/math/dsdp/files/patch-make.include ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/math/dsdp/files/patch-pdsdp_ScaLAPACK_Makefile =================================================================== --- head/math/dsdp/files/patch-pdsdp_ScaLAPACK_Makefile (nonexistent) +++ head/math/dsdp/files/patch-pdsdp_ScaLAPACK_Makefile (revision 483369) @@ -0,0 +1,17 @@ +--- pdsdp/ScaLAPACK/Makefile.orig 2018-10-29 04:57:01 UTC ++++ pdsdp/ScaLAPACK/Makefile +@@ -31,12 +31,12 @@ FLINKER = mpicc + + OBJS = readsdpa.o pdsdpscalapack.o + dsdpsdpa: ${OBJS} +- ${FLINKER} -o pdsdp5 ${OBJS} ${ALLLIBS} ++ ${FLINKER} $(LDFLAGS) -o pdsdp5 ${OBJS} ${ALLLIBS} + ${RM} ${OBJS} + + OBJS2 = maxcut.o pdsdpscalapack.o + maxcut: ${OBJS2} +- ${CLINKER} -o pmaxcut ${OBJS2} ${ALLLIBS} ++ ${CLINKER} $(LDFLAGS) -o pmaxcut ${OBJS2} ${ALLLIBS} + ${RM} ${OBJS2} + + info2: Property changes on: head/math/dsdp/files/patch-pdsdp_ScaLAPACK_Makefile ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/math/dsdp/files/patch-src_sys_dsdploginfo.c =================================================================== --- head/math/dsdp/files/patch-src_sys_dsdploginfo.c (nonexistent) +++ head/math/dsdp/files/patch-src_sys_dsdploginfo.c (revision 483369) @@ -0,0 +1,10 @@ +--- src/sys/dsdploginfo.c.orig 2018-10-29 04:54:46 UTC ++++ src/sys/dsdploginfo.c +@@ -6,7 +6,6 @@ + #include + #include + #include +-#include + #include "dsdpsys.h" + #include "dsdpbasictypes.h" + Property changes on: head/math/dsdp/files/patch-src_sys_dsdploginfo.c ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/math/dsdp/pkg-descr =================================================================== --- head/math/dsdp/pkg-descr (nonexistent) +++ head/math/dsdp/pkg-descr (revision 483369) @@ -0,0 +1,16 @@ +The DSDP software is a free open source implementation of an interior-point +method for semidefinite programming. It provides primal and dual solutions, +exploits low-rank structure and sparsity in the data, and has relatively low +memory requirements for an interior-point method. It allows feasible and +infeasible starting points and provides approximate certificates of +infeasibility when no feasible solution exists. The dual-scaling algorithm +implemented in this package has a convergence proof and worst-case polynomial +complexity under mild assumptions on the data. The software can be used as a +set of subroutines, through Matlab, or by reading and writing to data files. +Furthermore, the solver offers scalable parallel performance for large problems +and a well documented interface. Some of the most popular applications of +semidefinite programming and linear matrix inequalities (LMI) are model control, +truss topology design, and semidefinite relaxations of combinatorial and global +optimization problems. + +WWW: https://www.mcs.anl.gov/hs/software/DSDP/ Property changes on: head/math/dsdp/pkg-descr ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property