Index: head/science/Makefile =================================================================== --- head/science/Makefile (revision 482878) +++ head/science/Makefile (revision 482879) @@ -1,301 +1,302 @@ # $FreeBSD$ # COMMENT = Scientific ports SUBDIR += 2d-rewriter SUBDIR += ALPSCore SUBDIR += InsightToolkit SUBDIR += MOOSE-neural-simulator SUBDIR += PETSc SUBDIR += R-cran-AMORE SUBDIR += R-cran-DCluster SUBDIR += R-cran-Epi SUBDIR += R-cran-bayesm SUBDIR += R-cran-cmprsk SUBDIR += R-cran-e1071 SUBDIR += R-cran-eco SUBDIR += R-cran-epicalc SUBDIR += R-cran-etm SUBDIR += R-cran-fastICA SUBDIR += R-cran-kernlab SUBDIR += R-cran-snow SUBDIR += R-cran-som SUBDIR += R-cran-udunits2 SUBDIR += abinit SUBDIR += afni SUBDIR += aircraft-datcom SUBDIR += antioch SUBDIR += atom SUBDIR += atompaw SUBDIR += avogadro SUBDIR += avogadro2 SUBDIR += avogadrolibs SUBDIR += bagel SUBDIR += bddsolve SUBDIR += bft SUBDIR += bodr SUBDIR += brian SUBDIR += buddy SUBDIR += cdcl SUBDIR += cdf SUBDIR += cdo SUBDIR += cgnslib SUBDIR += cgribex SUBDIR += checkmol SUBDIR += chemical-mime-data SUBDIR += chemps2 SUBDIR += chemtool SUBDIR += chemtool-devel SUBDIR += chrono SUBDIR += clhep SUBDIR += clipper SUBDIR += colt SUBDIR += coot SUBDIR += cp2k SUBDIR += crf++ SUBDIR += dalton SUBDIR += datawarrior SUBDIR += dcl SUBDIR += devisor SUBDIR += dft_tools SUBDIR += dftbplus SUBDIR += dkh SUBDIR += dlib-cpp SUBDIR += dlpoly-classic SUBDIR += eccodes SUBDIR += ecs SUBDIR += elk SUBDIR += epte SUBDIR += erd SUBDIR += erkale SUBDIR += fastcap SUBDIR += fasthenry SUBDIR += fisicalab SUBDIR += fleur SUBDIR += fsom SUBDIR += fvcom SUBDIR += fvcom-mpi SUBDIR += fvm SUBDIR += gabedit SUBDIR += gamess-us SUBDIR += gchemutils SUBDIR += gdma SUBDIR += getdp SUBDIR += ghemical SUBDIR += ghmm SUBDIR += gnudatalanguage SUBDIR += gramps SUBDIR += grib_api SUBDIR += gromacs SUBDIR += gsmc SUBDIR += gtamsanalyzer SUBDIR += gwyddion SUBDIR += h5utils SUBDIR += harminv SUBDIR += hdf SUBDIR += hdf5 SUBDIR += hdf5-18 SUBDIR += hypre SUBDIR += iboview SUBDIR += isaac-cfd SUBDIR += jdftx SUBDIR += jstrack SUBDIR += kalzium SUBDIR += kalzium-kde4 SUBDIR += kst2 SUBDIR += lammps SUBDIR += lamprop SUBDIR += libaec SUBDIR += libccp4 SUBDIR += libcint SUBDIR += libctl SUBDIR += libefp SUBDIR += libgeodecomp SUBDIR += libghemical SUBDIR += libgridxc SUBDIR += libint SUBDIR += libint2 SUBDIR += libkml SUBDIR += liblinear SUBDIR += libmsym SUBDIR += liboglappth SUBDIR += libquantum SUBDIR += libssm SUBDIR += libsvm SUBDIR += libsvm-python SUBDIR += libxc SUBDIR += linsmith SUBDIR += lm SUBDIR += luscus SUBDIR += madness SUBDIR += massxpert SUBDIR += mbdyn SUBDIR += mcstas SUBDIR += mcstas-comps SUBDIR += mcxtrace SUBDIR += mcxtrace-comps SUBDIR += mdynamix SUBDIR += medit SUBDIR += meep SUBDIR += mei SUBDIR += metaf2xml SUBDIR += metaphysicl SUBDIR += minc2 SUBDIR += mmdb2 SUBDIR += mmtf SUBDIR += mol2ps SUBDIR += molgif + SUBDIR += molsketch SUBDIR += mpb SUBDIR += mpqc SUBDIR += msms SUBDIR += multiwfn SUBDIR += namd SUBDIR += ncs SUBDIR += netcdf SUBDIR += netcdf-cxx SUBDIR += netcdf-fortran SUBDIR += nifticlib SUBDIR += nwchem SUBDIR += octopus SUBDIR += openbabel SUBDIR += openkim SUBDIR += openmx SUBDIR += openstructure SUBDIR += p5-Algorithm-SVMLight SUBDIR += p5-Chemistry-3DBuilder SUBDIR += p5-Chemistry-Bond-Find SUBDIR += p5-Chemistry-Canonicalize SUBDIR += p5-Chemistry-Elements SUBDIR += p5-Chemistry-File-MDLMol SUBDIR += p5-Chemistry-File-Mopac SUBDIR += p5-Chemistry-File-PDB SUBDIR += p5-Chemistry-File-SLN SUBDIR += p5-Chemistry-File-SMARTS SUBDIR += p5-Chemistry-File-SMILES SUBDIR += p5-Chemistry-File-VRML SUBDIR += p5-Chemistry-File-XYZ SUBDIR += p5-Chemistry-FormulaPattern SUBDIR += p5-Chemistry-InternalCoords SUBDIR += p5-Chemistry-Isotope SUBDIR += p5-Chemistry-MacroMol SUBDIR += p5-Chemistry-MidasPattern SUBDIR += p5-Chemistry-Mok SUBDIR += p5-Chemistry-Mol SUBDIR += p5-Chemistry-Pattern SUBDIR += p5-Chemistry-Reaction SUBDIR += p5-Chemistry-Ring SUBDIR += p5-Geo-BUFR SUBDIR += p5-Geo-Coordinates-Converter SUBDIR += p5-Geo-Coordinates-Converter-iArea SUBDIR += p5-Geo-ReadGRIB SUBDIR += p5-Geo-WebService-Elevation-USGS SUBDIR += p5-Mcstas-Tools SUBDIR += p5-PerlMol SUBDIR += p5-Physics-Unit SUBDIR += paje SUBDIR += paraview SUBDIR += pcmsolver SUBDIR += pnetcdf SUBDIR += psychopy SUBDIR += pulseview SUBDIR += py-DendroPy SUBDIR += py-PyFR SUBDIR += py-MDAnalysis SUBDIR += py-MDAnalysisTests SUBDIR += py-OpenFermion SUBDIR += py-PyQuante SUBDIR += py-ScientificPython SUBDIR += py-SimpleSpectral SUBDIR += py-abipy SUBDIR += py-ase SUBDIR += py-avogadrolibs SUBDIR += py-cdo SUBDIR += py-chempy SUBDIR += py-coards SUBDIR += py-dlib SUBDIR += py-gpaw SUBDIR += py-gsd SUBDIR += py-h5py SUBDIR += py-hcluster SUBDIR += py-kinematics SUBDIR += py-mdp SUBDIR += py-mlpy SUBDIR += py-mmtf-python SUBDIR += py-molmod SUBDIR += py-netCDF4 SUBDIR += py-obspy SUBDIR += py-openpiv SUBDIR += py-paida SUBDIR += py-phono3py SUBDIR += py-phonopy SUBDIR += py-pupynere SUBDIR += py-pyaixi SUBDIR += py-pydicom SUBDIR += py-pymatgen SUBDIR += py-pymol SUBDIR += py-pyosf SUBDIR += py-pysal SUBDIR += py-pyteomics SUBDIR += py-pyteomics.biolccc SUBDIR += py-qspin SUBDIR += py-quantities SUBDIR += py-rmf SUBDIR += py-scikit-fuzzy SUBDIR += py-scikit-learn SUBDIR += py-scikit-sparse SUBDIR += py-scimath SUBDIR += py-scipy SUBDIR += py-scoria SUBDIR += py-spglib SUBDIR += py-veusz SUBDIR += py-ws2300 SUBDIR += pybrain SUBDIR += pycdf SUBDIR += pynn SUBDIR += qbox SUBDIR += qcl SUBDIR += qmcpack SUBDIR += qtresistors SUBDIR += quantum-espresso SUBDIR += qwalk SUBDIR += rdkit SUBDIR += rmf SUBDIR += rubygem-ai4r SUBDIR += rubygem-cdo SUBDIR += rubygem-rgeo SUBDIR += rubygem-rgeo-geojson SUBDIR += rubygem-rgeo-proj4 SUBDIR += rubygem-rgeo-shapefile SUBDIR += rubygem-ruby-dcl SUBDIR += rubygem-ruby-netcdf SUBDIR += siesta SUBDIR += sigrok-cli SUBDIR += sigrok-firmware SUBDIR += sigrok-firmware-fx2lafw SUBDIR += sigrok-firmware-utils SUBDIR += silo SUBDIR += simint SUBDIR += simlib SUBDIR += simsmith SUBDIR += spglib SUBDIR += step SUBDIR += step-kde4 SUBDIR += svmlight SUBDIR += szip SUBDIR += teem SUBDIR += tfel SUBDIR += tinker SUBDIR += triqs SUBDIR += udunits SUBDIR += v_sim SUBDIR += vmd SUBDIR += voro++ SUBDIR += wannier90 SUBDIR += wxmacmolplt SUBDIR += xcrysden SUBDIR += xdrawchem SUBDIR += xfce4-equake-plugin SUBDIR += xmakemol .include Index: head/science/molsketch/Makefile =================================================================== --- head/science/molsketch/Makefile (nonexistent) +++ head/science/molsketch/Makefile (revision 482879) @@ -0,0 +1,30 @@ +# $FreeBSD$ + +PORTNAME= molsketch +DISTVERSION= 0.5.2 +DISTVERSIONSUFFIX= -src +CATEGORIES= science +MASTER_SITES= SF/${PORTNAME}/Molsketch/Boron-11%20${DISTVERSION}/ +DISTNAME= Molsketch-${DISTVERSIONFULL} + +MAINTAINER= yuri@FreeBSD.org +COMMENT= 2D molecule editor + +LICENSE= GPLv2 +LICENSE_FILE= ${WRKSRC}/COPYING + +LIB_DEPENDS= libopenbabel.so:science/openbabel + +USES= cmake:outsource desktop-file-utils localbase:ldflags pkgconfig qt:5 shared-mime-info +USE_QT= core gui network printsupport svg widgets buildtools_build qmake_build +USE_LDCONFIG= ${PREFIX}/lib/molsketch + +CMAKE_ARGS= -DMSK_PREFIX:STRING=${PREFIX} + +WRKSRC= ${WRKDIR}/Molsketch-${DISTVERSION} + +OPTIONS_DEFINE= DOCS + +PORTDOCS= * + +.include Property changes on: head/science/molsketch/Makefile ___________________________________________________________________ Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:keywords ## -0,0 +1 ## +FreeBSD=%H \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/science/molsketch/distinfo =================================================================== --- head/science/molsketch/distinfo (nonexistent) +++ head/science/molsketch/distinfo (revision 482879) @@ -0,0 +1,3 @@ +TIMESTAMP = 1540350640 +SHA256 (Molsketch-0.5.2-src.tar.gz) = 87a4382c2cac8eb280f69ea2f7bd26f945adbce6012a347684f24304b1c491ae +SIZE (Molsketch-0.5.2-src.tar.gz) = 1670642 Property changes on: head/science/molsketch/distinfo ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/science/molsketch/files/patch-CMakeLists.txt =================================================================== --- head/science/molsketch/files/patch-CMakeLists.txt (nonexistent) +++ head/science/molsketch/files/patch-CMakeLists.txt (revision 482879) @@ -0,0 +1,29 @@ +--- CMakeLists.txt.orig 2018-08-15 17:18:23 UTC ++++ CMakeLists.txt +@@ -39,7 +39,7 @@ configure_file("${CMAKE_MODULE_PATH}/cma + add_custom_target(uninstall "${CMAKE_COMMAND}" -P "${CMAKE_CURRENT_BINARY_DIR}/cmake_uninstall.cmake") + + # Enabling debugging symbols +-set(CMAKE_BUILD_TYPE Debug) ++#set(CMAKE_BUILD_TYPE Debug) + + # Enabling shared libraries + set(BUILD_SHARED_LIBS ON) +@@ -119,7 +119,7 @@ if( CMAKE_SIZEOF_VOID_P EQUAL 8 AND NOT + endif( CMAKE_SIZEOF_VOID_P EQUAL 8 AND NOT APPLE ) + + if(NOT FORCEQt4) +- set(QTVERSIONSUFFIX "-qt5") ++ set(QTVERSIONSUFFIX "") + endif(NOT FORCEQt4) + + set(OBABEL_IFACE_NAME "libobabeliface${QTVERSIONSUFFIX}.so") +@@ -130,7 +130,7 @@ endif(WIN32 OR WIN64) + + add_definitions(-DOBABEL_IFACE_LOCATION="\\\"${MSK_INSTALL_LIBS}/${OBABEL_IFACE_NAME}\\\"") + +-set(CMAKE_INSTALL_PREFIX ${MSK_PREFIX}) ++#set(CMAKE_INSTALL_PREFIX ${MSK_PREFIX}) + + ################ Adding subdirs + add_subdirectory(libmolsketch) Property changes on: head/science/molsketch/files/patch-CMakeLists.txt ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/science/molsketch/files/patch-buildvariables =================================================================== --- head/science/molsketch/files/patch-buildvariables (nonexistent) +++ head/science/molsketch/files/patch-buildvariables (revision 482879) @@ -0,0 +1,10 @@ +--- buildvariables.orig 2018-10-24 03:59:40 UTC ++++ buildvariables +@@ -2,6 +2,6 @@ + "Executable destination dir";MSK_INSTALL_BINS;/bin;/bin + "Headers destination dir";MSK_INSTALL_INCLUDES;/include;/include + "Documentation destination dir";MSK_INSTALL_DOCS;/share/doc/molsketch;/doc +-"Libraries (64bit) destination dir";MSK_INSTALL_LIBS64;/lib64/molsketch;/lib ++"Libraries (64bit) destination dir";MSK_INSTALL_LIBS64;/lib/molsketch;/lib + "Libraries (32bit) destination dir";MSK_INSTALL_LIBS;/lib/molsketch;/lib + "Build OpenBabel interface";MSK_OBABELIFACE;true;true Property changes on: head/science/molsketch/files/patch-buildvariables ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/science/molsketch/files/patch-molsketch_programversion.cpp =================================================================== --- head/science/molsketch/files/patch-molsketch_programversion.cpp (nonexistent) +++ head/science/molsketch/files/patch-molsketch_programversion.cpp (revision 482879) @@ -0,0 +1,15 @@ +--- molsketch/programversion.cpp.orig 2018-10-24 03:35:50 UTC ++++ molsketch/programversion.cpp +@@ -88,10 +88,10 @@ QString ProgramVersion::toString() const + return QString("%1.%2.%3.%4").arg(d->major).arg(d->minor).arg(d->patch).arg(d->build); + } + +-unsigned int ProgramVersion::minor() const { ++unsigned int ProgramVersion::minorx() const { + return d->minor; + } + +-unsigned int ProgramVersion::major() const { ++unsigned int ProgramVersion::majorx() const { + return d->major; + } Property changes on: head/science/molsketch/files/patch-molsketch_programversion.cpp ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/science/molsketch/files/patch-molsketch_programversion.h =================================================================== --- head/science/molsketch/files/patch-molsketch_programversion.h (nonexistent) +++ head/science/molsketch/files/patch-molsketch_programversion.h (revision 482879) @@ -0,0 +1,13 @@ +--- molsketch/programversion.h.orig 2018-10-24 03:35:24 UTC ++++ molsketch/programversion.h +@@ -30,8 +30,8 @@ public: + ProgramVersion(const QString& version = ""); + ProgramVersion(int major, int minor = 0, int patch = 0, int build = 0); + ~ProgramVersion(); +- unsigned int major() const; +- unsigned int minor() const; ++ unsigned int majorx() const; ++ unsigned int minorx() const; + unsigned int patch() const; + unsigned int build() const; + bool operator ==(const ProgramVersion& other) const; Property changes on: head/science/molsketch/files/patch-molsketch_programversion.h ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/science/molsketch/pkg-descr =================================================================== --- head/science/molsketch/pkg-descr (nonexistent) +++ head/science/molsketch/pkg-descr (revision 482879) @@ -0,0 +1,4 @@ +Molsketch is a 2D molecular editing tool. +Its goal is to help you draw molecules quick and easily. + +WWW: https://molsketch.sourceforge.net/ Property changes on: head/science/molsketch/pkg-descr ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/science/molsketch/pkg-plist =================================================================== --- head/science/molsketch/pkg-plist (nonexistent) +++ head/science/molsketch/pkg-plist (revision 482879) @@ -0,0 +1,86 @@ +bin/molsketch +include/libmolsketch/TextInputItem.h +include/libmolsketch/abstractxmlobject.h +include/libmolsketch/actions/abstractitemaction.h +include/libmolsketch/actions/abstractrecursiveitemaction.h +include/libmolsketch/actions/alignmentaction.h +include/libmolsketch/actions/arrowtypeaction.h +include/libmolsketch/actions/arrowtypewidget.h +include/libmolsketch/actions/bondtypeaction.h +include/libmolsketch/actions/bondtypewidget.h +include/libmolsketch/actions/coloraction.h +include/libmolsketch/actions/deleteaction.h +include/libmolsketch/actions/drawaction.h +include/libmolsketch/actions/flipbondaction.h +include/libmolsketch/actions/flipstereobondsaction.h +include/libmolsketch/actions/frameaction.h +include/libmolsketch/actions/frametypeaction.h +include/libmolsketch/actions/frametypewidget.h +include/libmolsketch/actions/genericaction.h +include/libmolsketch/actions/incdecaction.h +include/libmolsketch/actions/itemgrouptypeaction.h +include/libmolsketch/actions/itemtypeaction.h +include/libmolsketch/actions/itemtypeselectionaction.h +include/libmolsketch/actions/itemtypewidget.h +include/libmolsketch/actions/linewidthaction.h +include/libmolsketch/actions/mechanismarrowaction.h +include/libmolsketch/actions/multiaction.h +include/libmolsketch/actions/periodictablewidget.h +include/libmolsketch/actions/reactionarrowaction.h +include/libmolsketch/actions/ringaction.h +include/libmolsketch/actions/rotateaction.h +include/libmolsketch/actions/textaction.h +include/libmolsketch/actions/transformcommand.h +include/libmolsketch/arrow.h +include/libmolsketch/arrowpopup.h +include/libmolsketch/atom.h +include/libmolsketch/atompopup.h +include/libmolsketch/bond.h +include/libmolsketch/boundingboxlinker.h +include/libmolsketch/colorbutton.h +include/libmolsketch/commands.h +include/libmolsketch/constants.h +include/libmolsketch/coordinatedelegate.h +include/libmolsketch/coordinatemodel.h +include/libmolsketch/coordinatetableview.h +include/libmolsketch/electronsystem.h +include/libmolsketch/element.h +include/libmolsketch/fileio.h +include/libmolsketch/fontchooser.h +include/libmolsketch/frame.h +include/libmolsketch/generics.h +include/libmolsketch/graphicsitem.h +include/libmolsketch/grid.h +include/libmolsketch/helptextemptydock.h +include/libmolsketch/helptextonemptylabel.h +include/libmolsketch/librarymodel.h +include/libmolsketch/libraryview.h +include/libmolsketch/lineupaction.h +include/libmolsketch/lonepair.h +include/libmolsketch/math2d.h +include/libmolsketch/mimemolecule.h +include/libmolsketch/molecule.h +include/libmolsketch/moleculemodelitem.h +include/libmolsketch/moleculepopup.h +include/libmolsketch/molscene.h +include/libmolsketch/molview.h +include/libmolsketch/propertiesdock.h +include/libmolsketch/propertieswidget.h +include/libmolsketch/qtversionmacros.h +include/libmolsketch/radicalelectron.h +include/libmolsketch/scenepropertieswidget.h +include/libmolsketch/scenesettings.h +include/libmolsketch/settingsconnector.h +include/libmolsketch/settingsfacade.h +include/libmolsketch/settingsitem.h +include/libmolsketch/stringify.h +include/libmolsketch/textitem.h +include/libmolsketch/xmlobjectinterface.h +lib/molsketch/libmolsketch.so +lib/molsketch/libobabeliface.so +share/applications/molsketch.desktop +share/icons/hicolor/scalable/apps/molsketch.svg +share/icons/hicolor/scalable/mimetypes/application-x-molsketch.svg +share/metainfo/net.sourceforge.molsketch.appdata.xml +share/mime/packages/molsketch.xml +share/pixmaps/molsketch.xpm Property changes on: head/science/molsketch/pkg-plist ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property