Index: head/biology/ncbi-toolkit/Makefile =================================================================== --- head/biology/ncbi-toolkit/Makefile (revision 481471) +++ head/biology/ncbi-toolkit/Makefile (revision 481472) @@ -1,106 +1,78 @@ # Created by: tonym # $FreeBSD$ PORTNAME= ncbi-toolkit -PORTVERSION= 2012.06.20 # containing BLAST v2.2.27 -PORTREVISION= 1 +DISTVERSION= 2017.01.06 # containing BLAST v2.2.27 (? is this true) CATEGORIES= biology MASTER_SITES= ftp://ftp.ncbi.nlm.nih.gov/toolbox/ncbi_tools/old/${PORTVERSION:S/.//g}/ DISTNAME= ncbi DIST_SUBDIR= ${PORTNAME}-${PORTVERSION} -MAINTAINER= ports@FreeBSD.org +MAINTAINER= yuri@FreeBSD.org COMMENT= NCBI development toolkit, including BLAST 2 and GenBank/Entrez support -LIB_DEPENDS= libpng.so:graphics/png +LIB_DEPENDS= libfontconfig.so:x11-fonts/fontconfig \ + libgmp.so:math/gmp \ + libgnutls.so:security/gnutls \ + libhogweed.so:security/nettle \ + libidn2.so:dns/libidn2 \ + libnettle.so:security/nettle \ + libp11-kit.so:security/p11-kit \ + libpng.so:graphics/png \ + libtasn1.so:security/libtasn1 \ + libtspi.so:security/trousers \ + libunistring.so:devel/libunistring \ + libXp.so:x11/libXp -USES= iconv motif -MAKE_JOBS_UNSAFE= yes +USES= gettext-runtime iconv jpeg motif +USE_XORG= x11 xau xext xft xmu xrender xt SUB_FILES= pkg-message -# These are the executables we install. -# -# We follow Debian in the separation of the port in three -# main categories and in the selection of programs that -# are installed in each case. This Makes Sense (TM). -# Thus, we drop a handful of programs that are useful only as tests -# or code examples -# (credit goes to Aaron Ucko, the Debian maintainer of the NCBI stuff) -# Right now the port installs all the executables below, this may -# change in the future with the addition of selectable knobs or -# new slave ports - -TOOLKIT_EXE= asn2ff asn2gb asn2idx asn2xml asndhuff asntool cdscan \ - checksub debruijn demo_regexp demo_regexp_grep dosimple \ - entrcmd errhdr fa2htgs findspl gene2xml getmesh getpub \ - gil2bin idfetch indexpub makeset ncbisort seqtest tbl2asn \ - vecscreen -BLAST_EXE= bl2seq blastall blastcl3 blastclust blastpgp copymat \ - fastacmd formatdb formatrpsdb impala makemat megablast \ - rpsblast seedtop taxblast -X11_EXE= Nentrez Psequin ddv entrez2 sbtedit udv - -# and these are the man pages we have -MAN_FILES= Psequin.1 asn2ff.1 asn2idx.1 asn2xml.1 asndhuff.1 \ - asntool.1 blast.1 blastclust.1 cdscan.1 checksub.1 \ - copymat.1 ddv.1 debruijn.1 entrez2.1 errhdr.1 fa2htgs.1 \ - fastacmd.1 findspl.1 formatdb.1 formatrpsdb.1 getmesh.1 \ - getpub.1 gil2bin.1 idfetch.1 indexpub.1 makemat.1 \ - taxblast.1 tbl2asn.1 udv.1 vecscreen.1 - -MAN_LINKS= bl2seq blastall blastcl3 blastpgp impala megablast \ - seedtop rpsblast - OPTIONS_DEFINE= DOCS post-patch: @${REINPLACE_CMD} -e \ 's|/usr/X11R6|${LOCALBASE}|g' ${WRKSRC}/make/makedis.csh @${REINPLACE_CMD} -e \ '/^NCBI_CC/s|=.*|= ${CC}| ; \ /^NCBI_LDFLGS1/s|=.*|= ${LDFLAGS}| ; \ /^NCBI_OPTFLAG/s|= .*|= ${CFLAGS}| ; \ s|-I/usr/X11R6/include||g ; \ s|-L/usr/X11R6/lib||g ; \ s|/usr/local|${LOCALBASE}|g ; \ s|-Wl,-Bstatic|| ; \ s|-Wl,-Bdynamic||' ${WRKSRC}/platform/freebsd.ncbi.mk @${REINPLACE_CMD} -e 's/%%ICONV_LIB%%/${ICONV_LIB}/' \ ${WRKSRC}/make/makeall.unx ${WRKSRC}/make/makenet.unx # the ncbi-toolkit provides a shell script to drive the build # and we use it do-build: - cd ${WRKDIR}; ./${DISTNAME}/make/makedis.csh + @cd ${WRKDIR} && ./${DISTNAME}/make/makedis.csh # the ncbi-toolkit does not provide an install target # we thus roll our own do-install: - (cd ${WRKSRC}/bin && ${INSTALL_PROGRAM} ${BLAST_EXE} \ - ${TOOLKIT_EXE} ${X11_EXE} ${STAGEDIR}${PREFIX}/bin) + cd ${WRKSRC}/bin && ${INSTALL_PROGRAM} * ${STAGEDIR}${PREFIX}/bin @${MKDIR} ${STAGEDIR}${PREFIX}/lib/${DISTNAME} - (cd ${WRKSRC}/lib && ${INSTALL_DATA} *.a \ - ${STAGEDIR}${PREFIX}/lib/${DISTNAME}) + cd ${WRKSRC}/lib && ${INSTALL_DATA} *.a \ + ${STAGEDIR}${PREFIX}/lib/${DISTNAME} @${MKDIR} ${STAGEDIR}${PREFIX}/include/${DISTNAME}/connect - (cd ${WRKSRC}/include && ${INSTALL_DATA} *.h \ - ${STAGEDIR}${PREFIX}/include/${DISTNAME}) - (cd ${WRKSRC}/include/connect && ${INSTALL_DATA} *.h \ - ${STAGEDIR}${PREFIX}/include/${DISTNAME}/connect) - (cd ${WRKSRC}/doc/man && ${INSTALL_MAN} ${MAN_FILES} \ - ${STAGEDIR}${MANPREFIX}/man/man1) -.for man in ${MAN_LINKS} - ${LN} -s ${MANPREFIX}/man/man1/blast.1.gz \ - ${STAGEDIR}${PREFIX}/man/man1/${man}.1.gz -.endfor + cd ${WRKSRC}/include && ${INSTALL_DATA} *.h \ + ${STAGEDIR}${PREFIX}/include/${DISTNAME} + cd ${WRKSRC}/include/connect && ${INSTALL_DATA} *.h \ + ${STAGEDIR}${PREFIX}/include/${DISTNAME}/connect + cd ${WRKSRC}/doc/man && ${INSTALL_MAN} * \ + ${STAGEDIR}${MANPREFIX}/man/man1 @${MKDIR} ${STAGEDIR}${DATADIR} - (cd ${WRKSRC}/data && ${INSTALL_DATA} * ${STAGEDIR}${DATADIR}) + cd ${WRKSRC}/data && ${INSTALL_DATA} * ${STAGEDIR}${DATADIR} do-install-DOCS-on: @${MKDIR} ${STAGEDIR}${DOCSDIR} @(cd ${WRKSRC}/doc && \ ${COPYTREE_SHARE} . ${STAGEDIR}${DOCSDIR} '-not ( -name man -o -path ./man\/* )') .include Index: head/biology/ncbi-toolkit/distinfo =================================================================== --- head/biology/ncbi-toolkit/distinfo (revision 481471) +++ head/biology/ncbi-toolkit/distinfo (revision 481472) @@ -1,2 +1,3 @@ -SHA256 (ncbi-toolkit-2012.06.20/ncbi.tar.gz) = 603c9a4ade2a6f2f8e412558b732924d78fae403d225706e2ac38d553b08073c -SIZE (ncbi-toolkit-2012.06.20/ncbi.tar.gz) = 68428744 +TIMESTAMP = 1538934016 +SHA256 (ncbi-toolkit-2017.01.06/ncbi.tar.gz) = 4b88aaad8f953b1b50bc7d06f3a5920f0d589d2c9a26c709199f8347905f5867 +SIZE (ncbi-toolkit-2017.01.06/ncbi.tar.gz) = 155731358 Index: head/biology/ncbi-toolkit/files/patch-corelib__ncbimisc.c =================================================================== --- head/biology/ncbi-toolkit/files/patch-corelib__ncbimisc.c (revision 481471) +++ head/biology/ncbi-toolkit/files/patch-corelib__ncbimisc.c (nonexistent) @@ -1,11 +0,0 @@ ---- corelib/ncbimisc.c.orig -+++ corelib/ncbimisc.c -@@ -1266,7 +1266,7 @@ - if (len < 1) return NULL; - - rsult = (Nlm_CharPtr) MemNew (len + 3); -- if (rsult == NULL) return; -+ if (rsult == NULL) return NULL; - tmp = rsult; - - for (i = 0; /* local [i] != NULL */ i < numitems; i++) { Property changes on: head/biology/ncbi-toolkit/files/patch-corelib__ncbimisc.c ___________________________________________________________________ Deleted: fbsd:nokeywords ## -1 +0,0 ## -yes \ No newline at end of property Deleted: svn:eol-style ## -1 +0,0 ## -native \ No newline at end of property Deleted: svn:mime-type ## -1 +0,0 ## -text/plain \ No newline at end of property Index: head/biology/ncbi-toolkit/files/patch-make-makenet.unx =================================================================== --- head/biology/ncbi-toolkit/files/patch-make-makenet.unx (revision 481471) +++ head/biology/ncbi-toolkit/files/patch-make-makenet.unx (nonexistent) @@ -1,58 +0,0 @@ ---- make/makenet.unx.orig 2008-12-11 00:23:29.000000000 +0300 -+++ make/makenet.unx 2011-04-14 00:26:38.440426134 +0400 -@@ -67,6 +67,7 @@ - VIB = - VIBLIBS= -lXm -lXmu -lXt -lX11 - VIBLIBS= -+USERLIBS = -lXft -lpng -ljpeg %%ICONV_LIB%% - SEQUIN_OPTS = - LIBCOPY = cp -p - SRCCOPY = ./ln-if-absent -@@ -934,17 +935,17 @@ - $(CC) -o ddv $(LDFLAGS) $(OBJDDV) $(LIB41) $(LIB31) $(LIB20) $(LIB61) $(LIB60) $(LIB22) $(LIB45) \ - $(LIB8) $(LIB7) $(NETCLILIB) $(LIB3) $(LIB4) $(LIB23) \ - $(LIBCOMPADJ) $(LIB2) $(LIB1) \ -- $(VIBLIBS) $(OTHERLIBS) -+ $(VIBLIBS) $(OTHERLIBS) $(USERLIBS) - - udv : $(OBJUDV) - $(CC) -o udv $(LDFLAGS) $(OBJUDV) $(LIB41) $(LIB31) $(LIB20) $(LIB61) $(LIB60) $(LIB22) $(LIB45) \ - $(LIB8) $(LIB7) $(NETCLILIB) $(LIB3) $(LIB4) \ - $(LIB23) $(LIBCOMPADJ) $(LIB2) \ -- $(LIB1) $(VIBLIBS) $(OTHERLIBS) -+ $(LIB1) $(VIBLIBS) $(OTHERLIBS) $(USERLIBS) - - Nentrez : entrez.c $(ULIB31) - $(CC) -o Nentrez $(LDFLAGS) entrez.c $(LIB41) $(LIB31) $(LIB30) $(LIB20) $(LIB61) $(LIB60) $(LIB22) $(LIB45) \ -- $(LIB36) $(LIB23) $(LIBCOMPADJ) $(LIB8) $(LIB7) $(NETCLILIB) $(LIB5) $(LIB4) $(LIB3) $(LIB2) $(LIB1) $(VIBLIBS) $(OTHERLIBS) -+ $(LIB36) $(LIB23) $(LIBCOMPADJ) $(LIB8) $(LIB7) $(NETCLILIB) $(LIB5) $(LIB4) $(LIB3) $(LIB2) $(LIB1) $(VIBLIBS) $(OTHERLIBS) $(USERLIBS) - - # left this in (Tentrez) for script backwards compatibility - Tentrez : entrez.c $(ULIB31) -@@ -1140,7 +1141,7 @@ - entrez2 : entrez2.c - $(CC) -g -o entrez2 $(LDFLAGS) entrez2.c $(LIB41) $(LIB6) $(LIB20) \ - $(LIB61) $(LIB60) $(LIB22) $(LIB23) $(LIBCOMPADJ) \ -- $(LIB2) $(LIB4) $(LIB1) $(VIBLIBS) $(OTHERLIBS) -+ $(LIB2) $(LIB4) $(LIB1) $(VIBLIBS) $(OTHERLIBS) $(USERLIBS) - $(VIB_POST_LINK) entrez2 - - # demo program (spidey) -@@ -1421,7 +1422,7 @@ - $(CC) -o Psequin -I. $(LDFLAGS) -UINTERNAL_NCBI_SEQUIN $(SRCSEQUIN) \ - $(LIB30) $(LIB45) $(LIB31) $(LIB20) $(LIB61) $(LIB60) $(LIB22) \ - $(LIB40) $(LIB41) $(LIB36) $(LIB23) $(LIBCOMPADJ) $(LIB11) \ -- $(ENTREZLIBS) $(LIB4) $(LIB2) $(LIB1) $(VIBLIBS) $(OTHERLIBS) -+ $(ENTREZLIBS) $(LIB4) $(LIB2) $(LIB1) $(VIBLIBS) $(OTHERLIBS) $(USERLIBS) - $(VIB_POST_LINK) Psequin - - # 'sbtedit' Submission Template Editor -@@ -1433,7 +1434,7 @@ - $(CC) -o sbtedit -I. $(LDFLAGS) -UINTERNAL_NCBI_SEQUIN $(SRCSBTEDIT) \ - $(LIB30) $(LIB45) $(LIB31) $(LIB20) $(LIB61) $(LIB60) $(LIB22) \ - $(LIB40) $(LIB41) $(LIB36) $(LIB23) $(LIBCOMPADJ) $(LIB11) \ -- $(ENTREZLIBS) $(LIB4) $(LIB2) $(LIB1) $(VIBLIBS) $(OTHERLIBS) -+ $(ENTREZLIBS) $(LIB4) $(LIB2) $(LIB1) $(VIBLIBS) $(OTHERLIBS) $(USERLIBS) - $(VIB_POST_LINK) sbtedit - - # 'streamer' Sequinesque Stream Editor Property changes on: head/biology/ncbi-toolkit/files/patch-make-makenet.unx ___________________________________________________________________ Deleted: fbsd:nokeywords ## -1 +0,0 ## -yes \ No newline at end of property Deleted: svn:eol-style ## -1 +0,0 ## -native \ No newline at end of property Deleted: svn:mime-type ## -1 +0,0 ## -text/plain \ No newline at end of property Index: head/biology/ncbi-toolkit/pkg-descr =================================================================== --- head/biology/ncbi-toolkit/pkg-descr (revision 481471) +++ head/biology/ncbi-toolkit/pkg-descr (revision 481472) @@ -1,19 +1,19 @@ The NCBI (National Center for Biotechnology Information) development toolkit, containing various libraries needed by NCBI applications, as well as a software suite containing, amongst other things, NCBI BLAST 2.0. From the README: The NCBI Software Development Toolkit was developed for the production and distribution of GenBank, Entrez, BLAST, and related services by NCBI. We make it freely available to the public without restriction to facilitate the use of NCBI by the scientific community. However, please understand that while we feel we have done a high quality job, this is not commercial software. The documentation lags considerably behind the software and we must make any changes required by our data production needs. Nontheless, many people have found it a useful and stable basis for a number of tools and applications. -WWW: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/MainPage/index.html +WWW: https://www.ncbi.nlm.nih.gov/IEB/ToolBox/MainPage/index.html Index: head/biology/ncbi-toolkit/pkg-plist =================================================================== --- head/biology/ncbi-toolkit/pkg-plist (revision 481471) +++ head/biology/ncbi-toolkit/pkg-plist (revision 481472) @@ -1,813 +1,821 @@ bin/Nentrez bin/Psequin bin/asn2ff bin/asn2gb bin/asn2idx bin/asn2xml bin/asndhuff bin/asntool -bin/bl2seq -bin/blastall bin/blastcl3 -bin/blastclust -bin/blastpgp bin/cdscan bin/checksub -bin/copymat bin/ddv bin/debruijn bin/demo_regexp bin/demo_regexp_grep bin/dosimple bin/entrcmd bin/entrez2 bin/errhdr bin/fa2htgs -bin/fastacmd bin/findspl -bin/formatdb -bin/formatrpsdb bin/gene2xml bin/getmesh bin/getpub bin/gil2bin bin/idfetch -bin/impala bin/indexpub -bin/makemat bin/makeset -bin/megablast bin/ncbisort -bin/rpsblast bin/sbtedit -bin/seedtop bin/seqtest -bin/taxblast bin/tbl2asn +bin/test_regexp +bin/testcore +bin/testobj +bin/testval bin/udv bin/vecscreen include/ncbi/FSpCompat.h include/ncbi/FullPath.h include/ncbi/MoreCarbonAccessors.h include/ncbi/MoreFilesExtras.h include/ncbi/MoreFilesX.h include/ncbi/Optimization.h include/ncbi/OptimizationEnd.h include/ncbi/PubStructAsn.h include/ncbi/a2ferr.h include/ncbi/a2ferrdf.h include/ncbi/a2fstruc.h include/ncbi/aacomp.h include/ncbi/accentr.h include/ncbi/accid1.h include/ncbi/accutils.h include/ncbi/acerdapi.h include/ncbi/aceread.h include/ncbi/actutils.h include/ncbi/algorend.h include/ncbi/alignloc.h include/ncbi/alignmgr.h include/ncbi/alignmgr2.h include/ncbi/alignval.h include/ncbi/aliparse.h include/ncbi/aliread.h include/ncbi/all.h include/ncbi/allpub.h include/ncbi/apparam.h include/ncbi/asn.h include/ncbi/asn2ff.h include/ncbi/asn2ff6.h include/ncbi/asn2ffg.h include/ncbi/asn2ffp.h include/ncbi/asn2gnbi.h include/ncbi/asn2gnbk.h include/ncbi/asn2gnbp.h include/ncbi/asn2graphic.h include/ncbi/asn2graphicp.h include/ncbi/asnacces.h include/ncbi/asnalign.h include/ncbi/asnbibli.h include/ncbi/asnblock.h include/ncbi/asncode.h include/ncbi/asnent2.h include/ncbi/asnentgene.h include/ncbi/asnfdef.h include/ncbi/asnfeat.h include/ncbi/asngbseq.h include/ncbi/asngen.h include/ncbi/asnid0.h include/ncbi/asninsdseq.h include/ncbi/asnloc.h include/ncbi/asnmacro.h include/ncbi/asnmdrs.h include/ncbi/asnmedli.h include/ncbi/asnmim.h include/ncbi/asnmime.h include/ncbi/asnmla.h include/ncbi/asnmla2.h include/ncbi/asnneten.h include/ncbi/asnproj.h include/ncbi/asnprt.h include/ncbi/asnpub.h include/ncbi/asnpubme.h include/ncbi/asnres.h include/ncbi/asnseq.h include/ncbi/asnsset.h include/ncbi/asnsubmt.h include/ncbi/asntable.h include/ncbi/asntax1.h include/ncbi/asntax3.h include/ncbi/asntaxon.h include/ncbi/asntseq.h include/ncbi/asnvalid.h include/ncbi/bandalgn.h include/ncbi/binary.h include/ncbi/biosrc.h include/ncbi/blast.h include/ncbi/blast_dust.h include/ncbi/blastconcat.h include/ncbi/blastconcatdef.h include/ncbi/blastdef.h include/ncbi/blastkar.h include/ncbi/blastpat.h include/ncbi/blastpri.h include/ncbi/blfmtutl.h include/ncbi/blocks.h include/ncbi/blstspc.h include/ncbi/blstxml.h include/ncbi/bspview.h include/ncbi/bxmlobj.h include/ncbi/casn.h include/ncbi/cdconfig.h include/ncbi/cdd.h include/ncbi/cddapi.h include/ncbi/cddposutil.h include/ncbi/cddutil.h include/ncbi/cdentrez.h include/ncbi/cdnewlib.h include/ncbi/cdrgn.h include/ncbi/cdrom.h include/ncbi/cdromlib.h include/ncbi/cn3d.h include/ncbi/cn3dentr.h include/ncbi/cn3dmain.h include/ncbi/cn3dmesh.h include/ncbi/cn3dmodl.h include/ncbi/cn3dmsel.h include/ncbi/cn3dmsg.h include/ncbi/cn3dopen.h include/ncbi/cn3dsave.h include/ncbi/cn3dshim.h include/ncbi/cn3dstyl.h include/ncbi/cn3dxprt.h include/ncbi/codon.h include/ncbi/compo_heap.h include/ncbi/compo_mode_condition.h include/ncbi/composition_adjustment.h include/ncbi/composition_constants.h include/ncbi/connect/connect_export.h include/ncbi/connect/ncbi_ansi_ext.h include/ncbi/connect/ncbi_assert.h include/ncbi/connect/ncbi_base64.h include/ncbi/connect/ncbi_buffer.h include/ncbi/connect/ncbi_comm.h include/ncbi/connect/ncbi_config.h include/ncbi/connect/ncbi_connection.h include/ncbi/connect/ncbi_connector.h include/ncbi/connect/ncbi_connssl.h include/ncbi/connect/ncbi_connutil.h include/ncbi/connect/ncbi_core.h include/ncbi/connect/ncbi_core_c.h include/ncbi/connect/ncbi_dispd.h include/ncbi/connect/ncbi_file_connector.h include/ncbi/connect/ncbi_ftp_connector.h include/ncbi/connect/ncbi_gnutls.h include/ncbi/connect/ncbi_heapmgr.h include/ncbi/connect/ncbi_host_info.h include/ncbi/connect/ncbi_host_infop.h include/ncbi/connect/ncbi_http_connector.h +include/ncbi/connect/ncbi_ipv6.h include/ncbi/connect/ncbi_lb.h +include/ncbi/connect/ncbi_lbos.h +include/ncbi/connect/ncbi_lbosp.h include/ncbi/connect/ncbi_lbsmd.h include/ncbi/connect/ncbi_local.h include/ncbi/connect/ncbi_memory_connector.h include/ncbi/connect/ncbi_priv.h include/ncbi/connect/ncbi_sendmail.h include/ncbi/connect/ncbi_server_info.h include/ncbi/connect/ncbi_server_infop.h include/ncbi/connect/ncbi_service.h include/ncbi/connect/ncbi_service_connector.h include/ncbi/connect/ncbi_servicep.h include/ncbi/connect/ncbi_socket.h include/ncbi/connect/ncbi_socket_connector.h include/ncbi/connect/ncbi_socket_unix.h include/ncbi/connect/ncbi_socketp.h include/ncbi/connect/ncbi_types.h include/ncbi/connect/ncbi_util.h include/ncbi/connect/ncbi_version.h include/ncbi/corematx.h include/ncbi/db_list.h include/ncbi/ddvclick.h include/ncbi/ddvcolor.h include/ncbi/ddvcreate.h include/ncbi/ddvgraph.h include/ncbi/ddvmain.h include/ncbi/ddvopen.h include/ncbi/ddvpanel.h include/ncbi/diagnost.h include/ncbi/dlogutil.h include/ncbi/document.h include/ncbi/dotmatrx.h include/ncbi/dotseq.h include/ncbi/dotviewer.h include/ncbi/drawingp.h include/ncbi/drawseq.h include/ncbi/dust.h include/ncbi/dvncode.h include/ncbi/edutil.h include/ncbi/egkludge.h include/ncbi/ent2api.h include/ncbi/entrez.h include/ncbi/entrez2.h include/ncbi/errdefn.h include/ncbi/explore.h include/ncbi/fastadl.h include/ncbi/fdlKludge.h include/ncbi/fdlobj.h include/ncbi/fea2seg.h include/ncbi/ffprint.h include/ncbi/findrepl.h include/ncbi/fstyle.h include/ncbi/fstylep.h include/ncbi/ftusrstr.h include/ncbi/gapxdrop.h include/ncbi/gather.h include/ncbi/gbfeat.h include/ncbi/gbftdef.h include/ncbi/gbparlex.h include/ncbi/gifgen.h include/ncbi/glbpic.h include/ncbi/gphdraw.h include/ncbi/gtrdraw.h include/ncbi/gxydraw.h include/ncbi/id1.h include/ncbi/id1arch.h include/ncbi/id1gen.h include/ncbi/id1map.h include/ncbi/id2.h include/ncbi/id2gen.h include/ncbi/id2map.h include/ncbi/id2sgen.h include/ncbi/image.h include/ncbi/imagelst.h include/ncbi/import.h include/ncbi/ingenext.h include/ncbi/ingengraph.h include/ncbi/ingenwin.h include/ncbi/jsavlt.h include/ncbi/jzcoll.h include/ncbi/jzmisc.h include/ncbi/layout.h include/ncbi/legend.h include/ncbi/list.h include/ncbi/lnfac.h include/ncbi/lookup.h include/ncbi/lsqfetch.h include/ncbi/macroapi.h include/ncbi/macrodlg.h include/ncbi/mapcn3d.h include/ncbi/mapgene.h include/ncbi/mapmime.h include/ncbi/mapmla.h include/ncbi/mappingp.h include/ncbi/mapproj.h include/ncbi/mappubme.h include/ncbi/maputil.h include/ncbi/matrix.h include/ncbi/matrix_frequency_data.h include/ncbi/mbalign.h include/ncbi/mblast.h include/ncbi/mconsist.h include/ncbi/mdrcherr.h include/ncbi/medarch.h include/ncbi/medutil.h include/ncbi/medview.h include/ncbi/mimapi.h include/ncbi/mkbioseq.h include/ncbi/mla2api.h include/ncbi/mlkludge.h include/ncbi/mmdb1.h include/ncbi/mmdb2.h include/ncbi/mmdb3.h include/ncbi/mmdbapi.h include/ncbi/mmdbapi1.h include/ncbi/mmdbapi2.h include/ncbi/mmdbapi3.h include/ncbi/mmdbapi4.h include/ncbi/mmdbdata.h include/ncbi/mmdblocl.h include/ncbi/motif.h include/ncbi/ncbi.h include/ncbi/ncbi_skew_guard.h include/ncbi/ncbibs.h include/ncbi/ncbidraw.h include/ncbi/ncbienv.h include/ncbi/ncbierr.h include/ncbi/ncbifile.h include/ncbi/ncbigif.h include/ncbi/ncbilang.h include/ncbi/ncbilcl.h include/ncbi/ncbimain.h include/ncbi/ncbimath.h include/ncbi/ncbimem.h include/ncbi/ncbimisc.h include/ncbi/ncbimsg.h include/ncbi/ncbinet.h include/ncbi/ncbiopt.h include/ncbi/ncbiport.h include/ncbi/ncbiprop.h include/ncbi/ncbisam.h include/ncbi/ncbisami.h include/ncbi/ncbisgml.h include/ncbi/ncbisort.h include/ncbi/ncbisrti.h include/ncbi/ncbistd.h include/ncbi/ncbistr.h include/ncbi/ncbithr.h include/ncbi/ncbitime.h include/ncbi/ncbiwin.h include/ncbi/ncbiwww.h include/ncbi/needleman.h include/ncbi/netblap3.h include/ncbi/netcnfg.h include/ncbi/netentr.h include/ncbi/netlib.h include/ncbi/netpriv.h include/ncbi/netscape.h include/ncbi/ni_error.h include/ncbi/ni_lib_.h include/ncbi/ni_types.h include/ncbi/nlm_linear_algebra.h include/ncbi/objacces.h 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