Index: head/science/dftbplus/Makefile =================================================================== --- head/science/dftbplus/Makefile (revision 481253) +++ head/science/dftbplus/Makefile (revision 481254) @@ -1,69 +1,69 @@ # $FreeBSD$ PORTNAME= dftbplus DISTVERSION= 18.2 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org COMMENT= DFTB+: Package for performing fast atomistic simulations LICENSE= GPLv3 # main code is under LGPL3+, the bundled dftd3-lib is under GPLv1+, this makes the result GPLv3 (based on https://www.gnu.org/licenses/gpl-faq.html#AllCompatibility) LIB_DEPENDS= libblas.so:math/blas \ liblapack.so:math/lapack \ libomp.so:devel/openmp RUN_DEPENDS= ${PYNUMPY} USES= fortran gmake python shebangfix SHEBANG_FILES= tools/dptools/bin/* tools/misc/* utils/srcmanip/* utils/build/* external/fypp/bin/* utils/get_opt_externals \ external/fypp/bin/fypp utils/test/testlist_to_fypp test/prog/dftb+/bin/tagdiff SHEBANG_GLOB= *.py USE_GITHUB= yes GH_TUPLE= dftbplus:mpifx:099ff75:mpifx/external/mpifx/origin \ dftbplus:scalapackfx:86cd6e4:scalapackfx/external/scalapackfx/origin \ dftbplus:dftd3-lib:00504a9:dftd3/external/dftd3/origin \ dftbplus:testparams:1601609:testparams/external/slakos/origin MAKEFILE= makefile TEST_TARGET= test FFLAGS+= -I${LOCALBASE}/include LDFLAGS+= -llapack -lblas ${LOCALBASE}/lib/gcc${GCC_DEFAULT}/libgcc_s.so ${LOCALBASE}/lib/gcc${GCC_DEFAULT}/libgfortran.so -lm ${LOCALBASE}/lib/libomp.so MAKE_ARGS= PYTHON=${PYTHON_CMD} FC=${FC} FXX=${FC} LN=${CC} \ INSTALLDIR=${STAGEDIR}${PREFIX} FREEBSD_PYDISTUTILS_INSTALLARGS="${PYDISTUTILS_INSTALLARGS} --root=${STAGEDIR}" OPTIONS_DEFINE= DFTD3 MPI SOCKETS ARPACK OPTIONS_DEFAULT= DFTD3 MPI SOCKETS DFTD3_DESC= Build with libdft3 DFTD3_MAKE_ARGS= WITH_DFTD3=1 DFTD3_MAKE_ARGS_OFF= WITH_DFTD3=0 MPI_MAKE_ARGS= WITH_MPI=1 MPI_MAKE_ARGS_OFF= WITH_MPI=0 MPI_LIB_DEPENDS= libmpich.so:net/mpich \ libscalapack.so:math/scalapack MPI_LDFLAGS= ${LOCALBASE}/lib/libmpich.so ${LOCALBASE}/lib/libmpifort.so ${LOCALBASE}/lib/libmpi.so SOCKETS_DESC= Build with sockets library SOCKETS_MAKE_ARGS= WITH_SOCKETS=1 SOCKETS_MAKE_ARGS_OFF= WITH_SOCKETS=0 SOCKETS_BINARY_ALIAS= gcc=${CC} ARPACK_DESC= Build with ARPACK for large eigenvalue problems ARPACK_MAKE_ARGS= WITH_ARPACK=1 ARPACK_MAKE_ARGS_OFF= WITH_ARPACK=0 -ARPACK_LIB_DEPENDS= libarpack.so:math/arpack +ARPACK_LIB_DEPENDS= libarpack.so:math/arpack-ng ARPACK_PREVENTS= MPI # ARPACK is only used in a single-core application MAKE_JOBS_UNSAFE= yes # race conditions when some options are ON post-extract: @${RM} ${WRKSRC}/external/scalapackfx/origin/test/psyr_result.dat.orig @cd ${WRKSRC} && ${CP} sys/make.x86_64-linux-gnu make.arch post-install: @cd ${STAGEDIR}${PREFIX}/bin && ${STRIP_CMD} dftb+ modes waveplot .include Index: head/science/mbdyn/Makefile =================================================================== --- head/science/mbdyn/Makefile (revision 481253) +++ head/science/mbdyn/Makefile (revision 481254) @@ -1,65 +1,65 @@ # Created by: Kay Lehmann # $FreeBSD$ PORTNAME= mbdyn PORTVERSION= 1.7.2 -PORTREVISION= 4 +PORTREVISION= 5 CATEGORIES= science MASTER_SITES= https://www.mbdyn.org/userfiles/downloads/ MAINTAINER= yuri@FreeBSD.org COMMENT= MultiBody Dynamics analysis system LICENSE= GPLv2 LICENSE_FILE= ${WRKSRC}/COPYING BROKEN_powerpc= Does not compile on powerpc BUILD_DEPENDS= libatomic_ops>0:devel/libatomic_ops LIB_DEPENDS= libltdl.so:devel/libltdl \ - libarpack.so:math/arpack \ + libarpack.so:math/arpack-ng \ libumfpack.so:math/suitesparse GNU_CONFIGURE= yes USES= compiler:c++11-lib fortran gmake libtool:build localbase USE_LDCONFIG= yes CPPFLAGS+= -fpermissive -I${LOCALBASE}/include/suitesparse CONFIGURE_ARGS= --program-prefix='' --enable-multithread --with-mpi=no \ --with-ginac=no INSTALL_TARGET= install-strip OPTIONS_DEFINE= METIS CHACO OPTIONS_RADIO= BLAS OPTIONS_RADIO_BLAS= REFERENCE GOTOBLAS ATLAS OPTIONS_DEFAULT= REFERENCE ATLAS_DESC= ATLAS CHACO_DESC= Enable chaco-support GOTOBLAS_DESC= GotoBLAS2 METIS_DESC= Enable metis-support REFERENCE_DESC= Blas / Lapack ATLAS_CONFIGURE_ON= --with-blas=atlas ATLAS_USES= blaslapack:atlas CHACO_BUILD_DEPENDS= ${LOCALBASE}/lib/libchaco.a:math/chaco CHACO_CONFIGURE_ON= --with-chaco=yes CHACO_CONFIGURE_OFF= --with-chaco=no GOTOBLAS_CONFIGURE_ON= --with-blas=goto --with-goto=goto2 GOTOBLAS_USES= blaslapack:gotoblas METIS_CONFIGURE_ON= --with-metis=yes METIS_CONFIGURE_OFF= --with-metis=no METIS_CPPFLAGS= -I${LOCALBASE}/include/metis METIS_LIB_DEPENDS= libmetis.so:math/metis4 REFERENCE_CONFIGURE_ON= --with-blas=blas REFERENCE_USES= blaslapack:netlib pre-configure: ${REINPLACE_CMD} -e '/try_lapack_LIBS=/s/-llapack/${LAPACKLIB}/' \ -e 's/ -lxerbla//; s/-lcholmod/-lcholmod ${BLASLIB} ${LAPACKLIB} -lsuitesparseconfig/' \ ${WRKSRC}/configure .include Index: head/science/octopus/Makefile =================================================================== --- head/science/octopus/Makefile (revision 481253) +++ head/science/octopus/Makefile (revision 481254) @@ -1,37 +1,38 @@ # $FreeBSD$ PORTNAME= octopus DISTVERSION= 8.2 +PORTREVISION= 1 CATEGORIES= science MASTER_SITES= http://www.tddft.org/programs/${PORTNAME}/download/${DISTVERSION}/ MAINTAINER= yuri@FreeBSD.org COMMENT= Scientific program aimed at the ab initio virtual experimentation LICENSE= GPLv2 BUILD_DEPENDS= bash:shells/bash -LIB_DEPENDS= libarpack.so:math/arpack \ +LIB_DEPENDS= libarpack.so:math/arpack-ng \ libblas.so:math/blas \ libfftw3.so:math/fftw3 \ libfontconfig.so:x11-fonts/fontconfig \ libfreetype.so:print/freetype2 \ libgd.so:graphics/gd \ libgsl.so:math/gsl \ liblapack.so:math/lapack \ libpng16.so:graphics/png \ libtiff.so:graphics/tiff \ libwebp.so:graphics/webp \ libxc.so:science/libxc USES= compiler:c++11-lang fortran gmake jpeg localbase:ldflags GNU_CONFIGURE= yes CONFIGURE_SHELL= ${PREFIX}/bin/bash USE_CXXSTD= c++11 FCFLAGS+= -I${LOCALBASE}/include -ffree-line-length-none post-stage: # https://gitlab.com/octopus-code/octopus/issues/108 @${RM} ${STAGEDIR}${PREFIX}/include/yaml.h .include