Index: head/biology/tRNAscan-SE/Makefile =================================================================== --- head/biology/tRNAscan-SE/Makefile (revision 480836) +++ head/biology/tRNAscan-SE/Makefile (revision 480837) @@ -1,27 +1,25 @@ # Created by: chuynh@biolateral.com.au # $FreeBSD$ PORTNAME= tRNAscan-SE PORTVERSION= 2.0.0 PORTREVISION= 1 CATEGORIES= biology MASTER_SITES= http://lowelab.ucsc.edu/software/ DISTFILES= ${DISTNAME:tl}${EXTRACT_SUFX} MAINTAINER= mzaki@niid.go.jp COMMENT= Searching for tRNA genes in genomic sequence LICENSE= GPLv3+ LICENSE_FILE= ${WRKSRC}/COPYING -BROKEN= missing plist - RUN_DEPENDS= cmsearch:biology/infernal WRKSRC= ${WRKDIR}/${DISTNAME:S,.0$,,} GNU_CONFIGURE= yes USES= perl5 autoreconf .include Index: head/biology/tRNAscan-SE/pkg-plist =================================================================== --- head/biology/tRNAscan-SE/pkg-plist (nonexistent) +++ head/biology/tRNAscan-SE/pkg-plist (revision 480837) @@ -0,0 +1,136 @@ +bin/EukHighConfidenceFilter +bin/covels-SE +bin/coves-SE +bin/eufindtRNA +bin/fasta2gsi +bin/sstofa +bin/tRNAscan-SE +bin/trnascan-1.4 +etc/tRNAscan-SE.conf +%%DATADIR%%/gcode/gcode.cilnuc +%%DATADIR%%/gcode/gcode.echdmito +%%DATADIR%%/gcode/gcode.invmito +%%DATADIR%%/gcode/gcode.othmito +%%DATADIR%%/gcode/gcode.vertmito +%%DATADIR%%/gcode/gcode.ystmito +%%DATADIR%%/models/Cren-eury-BHB-noncan.cm +%%DATADIR%%/models/Dsignal +%%DATADIR%%/models/ESELC.cm +%%DATADIR%%/models/PSELC.cm +%%DATADIR%%/models/TPCsignal +%%DATADIR%%/models/TRNA2-arch.cm +%%DATADIR%%/models/TRNA2-archns.cm +%%DATADIR%%/models/TRNA2-bact.cm +%%DATADIR%%/models/TRNA2-bactns.cm +%%DATADIR%%/models/TRNA2-euk.cm +%%DATADIR%%/models/TRNA2-eukns.cm +%%DATADIR%%/models/TRNA2.cm +%%DATADIR%%/models/TRNA2ns.cm +%%DATADIR%%/models/TRNAinf-1415-ns.cm +%%DATADIR%%/models/TRNAinf-1415.cm +%%DATADIR%%/models/TRNAinf-arch-3h.cm +%%DATADIR%%/models/TRNAinf-arch-5h.cm +%%DATADIR%%/models/TRNAinf-arch-SeC.cm 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