Index: head/biology/unanimity/Makefile =================================================================== --- head/biology/unanimity/Makefile (revision 478088) +++ head/biology/unanimity/Makefile (revision 478089) @@ -1,43 +1,42 @@ # $FreeBSD$ -PORTNAME= unanimity -DISTVERSION= g20180307 -PORTREVISION= 1 -CATEGORIES= biology +PORTNAME= unanimity +DISTVERSIONPREFIX= v +DISTVERSION= 3.1.0 +CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org COMMENT= Pacific Biosciences consensus library and applications LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE BROKEN_aarch64= fails to compile: mmintrin.h:47:5: use of undeclared identifier '__builtin_ia32_emms'; did you mean '__builtin_isless'? # Sensitive to dependency versions, use latest commit for everything -BUILD_DEPENDS= pbseqan==g20171002:biology/pbseqan \ - pbbam==g20180416:biology/pbbam \ - pbcopper==g20180413:biology/pbcopper +BUILD_DEPENDS= pbseqan>=g20171002:biology/pbseqan \ + pbbam>=g20180416:biology/pbbam \ + pbcopper>=g20180413:biology/pbcopper LIB_DEPENDS= libhts.so:biology/htslib \ libboost_regex.so:devel/boost-libs USES= cmake pkgconfig python USE_GITHUB= yes GH_ACCOUNT= PacificBiosciences -GH_TAGNAME= 6f11a13e1472b8c00337ba8c5e94bf83bdab31d6 CMAKE_ARGS+= -DHTSLIB_INCLUDE_DIRS:STRING=${LOCALBASE}/include/htslib \ -DHTSLIB_LIBRARIES:STRING="-L${LOCALBASE}/lib -lhts" \ -DPacBioBAM_INCLUDE_DIRS:STRING=${LOCALBASE}/include/pbbam \ -DPacBioBAM_LIBRARIES:STRING="-L${LOCALBASE}/lib -lpbbam" \ -DSEQAN_INCLUDE_DIRS:STRING=${LOCALBASE}/include/PacBio \ -Dpbcopper_INCLUDE_DIRS=${LOCALBASE}/include \ -Dpbcopper_LIBRARIES="-L${LOCALBASE}/lib -lpbcopper" CFLAGS_i386= -msse2 -Wno-c++11-narrowing PLIST_FILES= bin/arrow bin/ccs bin/gcpp lib/libcc2.a lib/libunanimity.a post-install: ${INSTALL_DATA} ${WRKSRC}/src/libcc2.a ${WRKSRC}/src/libunanimity.a \ ${STAGEDIR}${PREFIX}/lib .include Index: head/biology/unanimity/distinfo =================================================================== --- head/biology/unanimity/distinfo (revision 478088) +++ head/biology/unanimity/distinfo (revision 478089) @@ -1,3 +1,3 @@ -TIMESTAMP = 1524324354 -SHA256 (PacificBiosciences-unanimity-g20180307-6f11a13e1472b8c00337ba8c5e94bf83bdab31d6_GH0.tar.gz) = 20ed61c46afcfe86403a564136b96f909149208c51fde16f608e924ad4c59e38 -SIZE (PacificBiosciences-unanimity-g20180307-6f11a13e1472b8c00337ba8c5e94bf83bdab31d6_GH0.tar.gz) = 6492231 +TIMESTAMP = 1534907295 +SHA256 (PacificBiosciences-unanimity-v3.1.0_GH0.tar.gz) = 355866bd3f83bf1f7c322269c01d3c2f943e30942455741d6e802b0ad3f89912 +SIZE (PacificBiosciences-unanimity-v3.1.0_GH0.tar.gz) = 6493202