Index: head/biology/cytoscape/Makefile
===================================================================
--- head/biology/cytoscape/Makefile	(revision 476966)
+++ head/biology/cytoscape/Makefile	(revision 476967)
@@ -1,63 +1,63 @@
 # $FreeBSD$
 
 PORTNAME=	cytoscape
 DISTVERSION=	3.6.1
 CATEGORIES=	biology java
 MASTER_SITES=	LOCAL/yuri/:maven \
 		http://people.freebsd.org/~yuri/:maven
 DISTFILES=	FreeBSD-${PORTNAME}-${PORTVERSION}-maven-repository.tar.gz:maven
 
 MAINTAINER=	yuri@FreeBSD.org
 COMMENT=	Software to visualize molecular interaction networks, gene expression
 
-LICENSE=	MIT
-xLICENSE_FILE=	${WRKSRC}/license.txt
+LICENSE=	LGPL21
+LICENSE_FILE=	${WRKSRC}/api/LICENSE
 
 BROKEN_aarch64=		fails to build: Cytoscape Third-Party Dependencies (third-party): FAILURE
 BROKEN_armv6=		fails to build: Cytoscape Third-Party Dependencies (third-party): FAILURE
 BROKEN_armv7=		fails to build: Cytoscape Third-Party Dependencies (third-party): FAILURE
 
 BUILD_DEPENDS=	mvn:devel/maven \
 		bash:shells/bash
 RUN_DEPENDS=	bash:shells/bash
 
 USES=		shebangfix
 SHEBANG_FILES=	gui-distribution/assembly/src/main/bin/cytoscape.sh
 USE_JAVA=	yes
 JAVA_VERSION=	1.7+
 USE_GITHUB=	yes
 GH_TUPLE=	${PORTNAME}:${PORTNAME}-parent:${DISTVERSION}:p/parent \
 		${PORTNAME}:${PORTNAME}-api:${DISTVERSION}:a/api \
 		${PORTNAME}:${PORTNAME}-impl:${DISTVERSION}:i/impl \
 		${PORTNAME}:${PORTNAME}-support:${DISTVERSION}:s/support \
 		${PORTNAME}:${PORTNAME}-gui-distribution:${DISTVERSION}:g/gui-distribution \
 		${PORTNAME}:${PORTNAME}-app-template:${DISTVERSION}:d/app-developer
 NO_ARCH=	yes
 
 USER_WRKDIR=	~/.${PORTNAME}
 
 do-build:
 	@cd ${WRKSRC} && ${SETENV} ${MAKE_ENV} \
 		${LOCALBASE}/bin/mvn --offline \
 		-fae install \
 		-Dmaven.test.skip=true \
 		-Duser.home=${WRKDIR}
 
 do-install:
 	@cd ${WRKSRC} && ${COPYTREE_SHARE} gui-distribution ${STAGEDIR}${DATADIR}
 	# shouldn't be needed, but the executable bit sometimes isn't set
 	@${CHMOD} +x ${STAGEDIR}${DATADIR}/gui-distribution/assembly/target/cytoscape/cytoscape.sh
 	@${CHMOD} +x ${STAGEDIR}${DATADIR}/gui-distribution/assembly/target/cytoscape/framework/bin/karaf
 	# create a shell executable calling the real command
 	@(echo "#!/bin/sh"; \
 	  echo ""; \
 	  echo "cd ${DATADIR} && JAVA_HOME=${JAVA_HOME} ./gui-distribution/assembly/target/cytoscape/cytoscape.sh \"$@\"" \
 	) > ${STAGEDIR}${PREFIX}/bin/${PORTNAME}
 	@${CHMOD} +x ${STAGEDIR}${PREFIX}/bin/${PORTNAME}
 	# redirect user data to /tmp until they fix the location so that it would write under $HOME
 	@${RM} -r ${STAGEDIR}${DATADIR}/gui-distribution/assembly/target/cytoscape/framework/instances
 	@cd ${STAGEDIR}${DATADIR}/gui-distribution/assembly/target/cytoscape/framework && ${LN} -s /tmp instances
 	# use the automatic plist: a few hundred files are under DATADIR
 	@${SETENV} ${CO_ENV} ${SH} ${SCRIPTSDIR}/check-stagedir.sh makeplist | ${GREP} -v ^\/ | ${SED} -e 's|%%DATADIR%%|share/${PORTNAME}|' > ${TMPPLIST}
 
 .include <bsd.port.mk>
Index: head/biology/cytoscape/distinfo
===================================================================
--- head/biology/cytoscape/distinfo	(revision 476966)
+++ head/biology/cytoscape/distinfo	(revision 476967)
@@ -1,17 +1,19 @@
-TIMESTAMP = 1530603760
+TIMESTAMP = 1530956058
 SHA256 (FreeBSD-cytoscape-3.6.1-maven-repository.tar.gz) = f3e33e99168b56768d2ee854956e59bcbb888101fd518239887524d692b78f7a
 SIZE (FreeBSD-cytoscape-3.6.1-maven-repository.tar.gz) = 1235655281
+SHA256 (install4j-maven-plugin-1.1.1.jar) = 301f5ca0718e630a62583561fb1a05c26ee40b5dc81ddd1ffc56bb17c813c506
+SIZE (install4j-maven-plugin-1.1.1.jar) = 27105
 SHA256 (cytoscape-cytoscape-3.6.1_GH0.tar.gz) = f172c9e459293661a83d2618da511901410336b76b0c1716697e60f821c2f150
 SIZE (cytoscape-cytoscape-3.6.1_GH0.tar.gz) = 12785
 SHA256 (cytoscape-cytoscape-parent-3.6.1_GH0.tar.gz) = 0786e8d7877fa54d2a64d65209856a4a946df4facd3cbc947e8c65d14a035084
 SIZE (cytoscape-cytoscape-parent-3.6.1_GH0.tar.gz) = 2863
 SHA256 (cytoscape-cytoscape-api-3.6.1_GH0.tar.gz) = a264a434d5942cad2ef69df7aa29fad74a6d1f11369a964d7c38462608def73b
 SIZE (cytoscape-cytoscape-api-3.6.1_GH0.tar.gz) = 1731631
 SHA256 (cytoscape-cytoscape-impl-3.6.1_GH0.tar.gz) = 0fcea5a4d804972db5b0cf77174a953d22da8fed6740dbaa01754eb7aea50d21
 SIZE (cytoscape-cytoscape-impl-3.6.1_GH0.tar.gz) = 29851040
 SHA256 (cytoscape-cytoscape-support-3.6.1_GH0.tar.gz) = 3f13088c35d41fa616dc7e735469f360ee4d17b1838cde8291f88b01bacfe657
 SIZE (cytoscape-cytoscape-support-3.6.1_GH0.tar.gz) = 52940
 SHA256 (cytoscape-cytoscape-gui-distribution-3.6.1_GH0.tar.gz) = 73fb7efb51a0413252a7e9e28d4fb7e28d16eea9f60be534fd962a5e534ca72e
 SIZE (cytoscape-cytoscape-gui-distribution-3.6.1_GH0.tar.gz) = 14818052
 SHA256 (cytoscape-cytoscape-app-template-3.6.1_GH0.tar.gz) = 9cf7b64a3e6effd22a20d577c7fa41b11f896e2298ef1655f2fe31c21602bce0
 SIZE (cytoscape-cytoscape-app-template-3.6.1_GH0.tar.gz) = 1887