Index: head/biology/fastx-toolkit/Makefile =================================================================== --- head/biology/fastx-toolkit/Makefile (revision 470123) +++ head/biology/fastx-toolkit/Makefile (revision 470124) @@ -1,24 +1,22 @@ # $FreeBSD$ PORTNAME= fastx_toolkit PORTVERSION= 0.0.14 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org COMMENT= CLI tools for Short-Reads FASTA/FASTQ files preprocessing LICENSE= AGPLv3+ LICENSE_FILE= ${WRKSRC}/COPYING LIB_DEPENDS= libgtextutils.so:biology/libgtextutils USES= autoreconf libtool perl5 pkgconfig shebangfix USE_PERL5= run SHEBANG_FILES= scripts/*.pl - USE_GITHUB= yes GH_ACCOUNT= agordon - GNU_CONFIGURE= yes .include Index: head/biology/fastx-toolkit/files/patch-src_libfastx_fastx.h =================================================================== --- head/biology/fastx-toolkit/files/patch-src_libfastx_fastx.h (nonexistent) +++ head/biology/fastx-toolkit/files/patch-src_libfastx_fastx.h (revision 470124) @@ -0,0 +1,19 @@ +--- src/libfastx/fastx.h.orig 2018-05-16 14:50:08 UTC ++++ src/libfastx/fastx.h +@@ -58,7 +58,7 @@ typedef enum { + OUTPUT_SAME_AS_INPUT=3 + } OUTPUT_FILE_TYPE; + +-#pragma pack(1) ++#pragma pack(push,1) + typedef struct + { + /* Record data - common for FASTA/FASTQ */ +@@ -115,6 +115,7 @@ typedef struct + FILE* input; + FILE* output; + } FASTX ; ++#pragma pack(pop) + + + void fastx_init_reader(FASTX *pFASTX, const char* filename, Property changes on: head/biology/fastx-toolkit/files/patch-src_libfastx_fastx.h ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property