Index: head/biology/paml/Makefile =================================================================== --- head/biology/paml/Makefile (revision 468354) +++ head/biology/paml/Makefile (revision 468355) @@ -1,53 +1,53 @@ # Created by: dbader@eece.unm.edu # $FreeBSD$ PORTNAME= paml -DISTVERSION= 4.9h +PORTVERSION= 4.9h CATEGORIES= biology MASTER_SITES= http://abacus.gene.ucl.ac.uk/software/ DISTNAME= ${PORTNAME}${DISTVERSION} MAINTAINER= jrm@FreeBSD.org COMMENT= Phylogenetic Analysis by Maximum Likelihood (PAML) LICENSE= GPLv3 USES= dos2unix gmake tar:tgz DOS2UNIX_GLOB= *.HKYG5 *.aa *.c *.ctl *.dat *.nexus *.nuc *.phy *.result *.tre \ *.trees *.txt *.xml paupblock paupend BINARIES= baseml basemlg chi2 codeml evolver evolverNSbranches \ evolverNSbranchsites evolverNSsites pamp yn00 OPTIONS_DEFINE= DOCS EXAMPLES post-extract: @${FIND} ${WRKSRC}/Technical -name "*.exe" -delete do-build: @cd ${WRKSRC}/src && ${SETENV} ${MAKE_ENV} ${MAKE_CMD} .for f in NSbranches NSsites NSbranchsites @cd ${WRKSRC}/src && \ ${CC} ${CFLAGS} -DCodon${f} -o evolver${f} evolver.c tools.c -lm .endfor do-install: .for f in ${BINARIES} ${INSTALL_PROGRAM} ${WRKSRC}/src/${f} ${STAGEDIR}${PREFIX}/bin .endfor do-install-DOCS-on: @${MKDIR} ${STAGEDIR}${DOCSDIR} ${INSTALL_DATA} ${WRKSRC}/doc/* ${STAGEDIR}${DOCSDIR} ${INSTALL_DATA} ${WRKSRC}/README.txt ${STAGEDIR}${DOCSDIR} do-install-EXAMPLES-on: @${MKDIR} ${STAGEDIR}${EXAMPLESDIR} (cd ${WRKSRC} && ${COPYTREE_SHARE} "dat Technical" \ ${STAGEDIR}${EXAMPLESDIR}) (cd ${WRKSRC}/examples && ${COPYTREE_SHARE} . ${STAGEDIR}${EXAMPLESDIR}) .for f in *.aa *.ctl *.dat *.nuc *.trees *.txt paup* ${INSTALL_DATA} ${WRKSRC}/${f} ${STAGEDIR}${EXAMPLESDIR} .endfor .include