Index: head/math/Makefile =================================================================== --- head/math/Makefile (revision 456853) +++ head/math/Makefile (revision 456854) @@ -1,767 +1,768 @@ # $FreeBSD$ # COMMENT = Mathematics SUBDIR += GiNaC SUBDIR += PDL SUBDIR += R SUBDIR += R-cran-Amelia SUBDIR += R-cran-CVST SUBDIR += R-cran-ChangeAnomalyDetection SUBDIR += R-cran-DEoptimR SUBDIR += R-cran-DRR SUBDIR += R-cran-Formula SUBDIR += R-cran-KFAS SUBDIR += R-cran-LearnBayes SUBDIR += R-cran-MCMCpack SUBDIR += R-cran-MSwM SUBDIR += R-cran-MatchIt SUBDIR += R-cran-Matching SUBDIR += R-cran-MatrixModels SUBDIR += R-cran-NMF SUBDIR += R-cran-RHmm SUBDIR += R-cran-RSvgDevice SUBDIR += R-cran-RcppArmadillo SUBDIR += R-cran-RcppEigen SUBDIR += R-cran-RcppRoll SUBDIR += R-cran-Rmpfr SUBDIR += R-cran-Rsolnp SUBDIR += R-cran-SparseM SUBDIR += R-cran-VGAM SUBDIR += R-cran-Zelig SUBDIR += R-cran-assertthat SUBDIR += R-cran-backports SUBDIR += R-cran-bdsmatrix SUBDIR += R-cran-car SUBDIR += R-cran-coda SUBDIR += R-cran-combinat SUBDIR += R-cran-ddalpha SUBDIR += R-cran-deldir SUBDIR += R-cran-dimRed SUBDIR += R-cran-dlmodeler SUBDIR += R-cran-dplyr SUBDIR += R-cran-expm SUBDIR += R-cran-forecast SUBDIR += R-cran-fracdiff SUBDIR += R-cran-geepack SUBDIR += R-cran-gmp SUBDIR += R-cran-gower SUBDIR += R-cran-gpclib SUBDIR += R-cran-gss SUBDIR += R-cran-gtable SUBDIR += R-cran-igraph SUBDIR += R-cran-influenceR SUBDIR += R-cran-inline SUBDIR += R-cran-ipred SUBDIR += R-cran-irlba SUBDIR += R-cran-labeling SUBDIR += R-cran-lava SUBDIR += R-cran-lazyeval SUBDIR += R-cran-lme4 SUBDIR += R-cran-maxLik SUBDIR += R-cran-mcmc SUBDIR += R-cran-memisc SUBDIR += R-cran-minqa SUBDIR += R-cran-miscTools SUBDIR += R-cran-mvtnorm SUBDIR += R-cran-nloptr SUBDIR += R-cran-nnls SUBDIR += R-cran-nortest SUBDIR += R-cran-numDeriv SUBDIR += R-cran-outliers SUBDIR += R-cran-pbkrtest SUBDIR += R-cran-prodlim SUBDIR += R-cran-psych SUBDIR += R-cran-quadprog SUBDIR += R-cran-qualityTools SUBDIR += R-cran-quantreg SUBDIR += R-cran-recipes SUBDIR += R-cran-rgenoud SUBDIR += R-cran-robustbase SUBDIR += R-cran-sandwich SUBDIR += R-cran-sf SUBDIR += R-cran-sm SUBDIR += R-cran-sp SUBDIR += R-cran-spdep SUBDIR += R-cran-sspir SUBDIR += R-cran-stabledist SUBDIR += R-cran-survey SUBDIR += R-cran-truncnorm SUBDIR += R-cran-units SUBDIR += R-cran-xts SUBDIR += R-cran-zoo SUBDIR += aamath SUBDIR += abacus SUBDIR += abakus SUBDIR += abs SUBDIR += acalc SUBDIR += add SUBDIR += algae SUBDIR += alglib SUBDIR += algotutor SUBDIR += alt-ergo SUBDIR += amath SUBDIR += ambit SUBDIR += analitza SUBDIR += ann SUBDIR += apc SUBDIR += aribas SUBDIR += armadillo SUBDIR += arpack SUBDIR += arpack++ SUBDIR += arpack-ng SUBDIR += arpack-ng-mpich SUBDIR += asir2000 SUBDIR += aspcud SUBDIR += asymptote SUBDIR += atlas SUBDIR += biggles SUBDIR += blacs SUBDIR += blas SUBDIR += blis SUBDIR += blitz++ SUBDIR += blocksolve95 SUBDIR += bsdnt SUBDIR += cadabra2 SUBDIR += calc SUBDIR += calcoo SUBDIR += calctool SUBDIR += cantor SUBDIR += cblas SUBDIR += ccmath SUBDIR += ceres-solver SUBDIR += cgal SUBDIR += chaco SUBDIR += chryzodus SUBDIR += clarence SUBDIR += clasp SUBDIR += clblas SUBDIR += clblast SUBDIR += clfft SUBDIR += clipper SUBDIR += cln SUBDIR += cloog SUBDIR += clp SUBDIR += clrng SUBDIR += cminpack SUBDIR += cmlib SUBDIR += coinmp SUBDIR += concorde SUBDIR += convertall SUBDIR += coq SUBDIR += crlibm SUBDIR += cryptominisat SUBDIR += cvc3 SUBDIR += diehard SUBDIR += dieharder SUBDIR += djbfft SUBDIR += drgeo SUBDIR += dynare SUBDIR += e SUBDIR += edenmath SUBDIR += eigen2 SUBDIR += eigen3 SUBDIR += eispack SUBDIR += emc2 SUBDIR += ent SUBDIR += entropy SUBDIR += eprover SUBDIR += ess SUBDIR += eukleides SUBDIR += eval SUBDIR += facile SUBDIR += fann SUBDIR += fflas-ffpack SUBDIR += fftw SUBDIR += fftw-float SUBDIR += fftw3 SUBDIR += fftw3-float SUBDIR += fftw3-long SUBDIR += fftw3-quad SUBDIR += fityk SUBDIR += form SUBDIR += fpc-fftw SUBDIR += fpc-gmp SUBDIR += fpc-numlib SUBDIR += freemat SUBDIR += fxt SUBDIR += galculator SUBDIR += gambit SUBDIR += gap SUBDIR += gdcalc SUBDIR += geg SUBDIR += geogebra SUBDIR += geonext SUBDIR += gexpr SUBDIR += ggobi SUBDIR += giacxcas SUBDIR += givaro SUBDIR += gkmap SUBDIR += glgraph SUBDIR += glm SUBDIR += glpk SUBDIR += gmm++ SUBDIR += gmp SUBDIR += gmp-ecm SUBDIR += gnome-calculator SUBDIR += gnubc SUBDIR += gnumeric SUBDIR += gnuplot SUBDIR += gnuplot-lite SUBDIR += gnuplot-tex-extras SUBDIR += goblin SUBDIR += gotoblas SUBDIR += grace SUBDIR += gracetmpl SUBDIR += graphthing SUBDIR += gretl SUBDIR += gri SUBDIR += gringo SUBDIR += grpn SUBDIR += gsl SUBDIR += hexcalc SUBDIR += hfst SUBDIR += hs-Agda SUBDIR += hs-Agda-stdlib SUBDIR += hs-NumInstances SUBDIR += hs-adjunctions SUBDIR += hs-categories SUBDIR += hs-comonad SUBDIR += hs-contravariant SUBDIR += hs-data-lens SUBDIR += hs-data-lens-template SUBDIR += hs-distributive SUBDIR += hs-erf SUBDIR += hs-fixed SUBDIR += hs-half SUBDIR += hs-ieee754 SUBDIR += hs-integer-logarithms SUBDIR += hs-kan-extensions SUBDIR += hs-math-functions SUBDIR += hs-mwc-random SUBDIR += hs-pointed SUBDIR += hs-probability SUBDIR += hs-semigroupoids SUBDIR += hs-semigroups SUBDIR += hs-statistics SUBDIR += hs-vector-space SUBDIR += igraph SUBDIR += ipopt SUBDIR += ised SUBDIR += jacal SUBDIR += jags SUBDIR += jakarta-commons-math SUBDIR += jakarta-commons-math3 SUBDIR += jama SUBDIR += jeuclid SUBDIR += jlatexmath SUBDIR += jsmath-fonts SUBDIR += jtransforms SUBDIR += jts SUBDIR += kalgebra SUBDIR += kbruch SUBDIR += kcalc SUBDIR += kig SUBDIR += kktdirect SUBDIR += kmplot SUBDIR += labplot SUBDIR += lambda SUBDIR += lapack SUBDIR += lapack++ SUBDIR += lapack95 SUBDIR += lapacke SUBDIR += laspack SUBDIR += ldouble SUBDIR += levmar SUBDIR += libRmath SUBDIR += libflame SUBDIR += liblbfgs + SUBDIR += libmesh SUBDIR += libmissing SUBDIR += libocas SUBDIR += liborigin SUBDIR += libqalculate SUBDIR += libranlip SUBDIR += librsb SUBDIR += libtommath SUBDIR += libtsnnls SUBDIR += libxls SUBDIR += libxlsxwriter SUBDIR += linpack SUBDIR += lll_spect SUBDIR += lp_solve SUBDIR += lrng SUBDIR += ltl SUBDIR += ltl2ba SUBDIR += lybniz SUBDIR += mate-calc SUBDIR += math77 SUBDIR += mathmod SUBDIR += mathomatic SUBDIR += matio SUBDIR += matlab-installer SUBDIR += maxima SUBDIR += mbasecalc SUBDIR += metis SUBDIR += metis-edf SUBDIR += metis4 SUBDIR += mingw32-libgmp SUBDIR += minisat SUBDIR += miracl SUBDIR += moo SUBDIR += mosesdecoder SUBDIR += mpc SUBDIR += mpexpr SUBDIR += mpfr SUBDIR += mpir SUBDIR += mprime SUBDIR += msieve SUBDIR += mtl SUBDIR += mtrxmath SUBDIR += mumps SUBDIR += mumps-edf SUBDIR += mumps-mpich SUBDIR += muparser SUBDIR += naturalmath SUBDIR += nauty SUBDIR += ndiff SUBDIR += newmat SUBDIR += nfft SUBDIR += ngraph SUBDIR += nlopt SUBDIR += ntl SUBDIR += numdiff SUBDIR += nyh-hoc SUBDIR += ocaml-ocamlgraph SUBDIR += ocaml-zarith SUBDIR += ocamlgsl SUBDIR += octave SUBDIR += octave-forge SUBDIR += octave-forge-actuarial SUBDIR += octave-forge-audio SUBDIR += octave-forge-base SUBDIR += octave-forge-bim SUBDIR += octave-forge-bioinfo SUBDIR += octave-forge-bsltl SUBDIR += octave-forge-cgi SUBDIR += octave-forge-civil-engineering SUBDIR += octave-forge-communications SUBDIR += octave-forge-control SUBDIR += octave-forge-data-smoothing SUBDIR += octave-forge-database SUBDIR += octave-forge-dataframe SUBDIR += octave-forge-divand SUBDIR += octave-forge-doctest SUBDIR += octave-forge-econometrics SUBDIR += octave-forge-engine SUBDIR += octave-forge-fenv SUBDIR += octave-forge-financial SUBDIR += octave-forge-fits SUBDIR += octave-forge-fl-core SUBDIR += octave-forge-fpl SUBDIR += octave-forge-fuzzy-logic-toolkit SUBDIR += octave-forge-ga SUBDIR += octave-forge-general SUBDIR += octave-forge-generate_html SUBDIR += octave-forge-geometry SUBDIR += octave-forge-gnuplot SUBDIR += octave-forge-gsl SUBDIR += octave-forge-ident SUBDIR += octave-forge-image SUBDIR += octave-forge-informationtheory SUBDIR += octave-forge-integration SUBDIR += octave-forge-interval SUBDIR += octave-forge-io SUBDIR += octave-forge-irsa SUBDIR += octave-forge-level-set SUBDIR += octave-forge-linear-algebra SUBDIR += octave-forge-lssa SUBDIR += octave-forge-ltfat SUBDIR += octave-forge-mapping SUBDIR += octave-forge-mechanics SUBDIR += octave-forge-miscellaneous SUBDIR += octave-forge-missing-functions SUBDIR += octave-forge-msh SUBDIR += octave-forge-multicore SUBDIR += octave-forge-mvn SUBDIR += octave-forge-nan SUBDIR += octave-forge-ncarray SUBDIR += octave-forge-netcdf SUBDIR += octave-forge-nlwing2 SUBDIR += octave-forge-nnet SUBDIR += octave-forge-nurbs SUBDIR += octave-forge-ocs SUBDIR += octave-forge-oct2mat SUBDIR += octave-forge-octcdf SUBDIR += octave-forge-octclip SUBDIR += octave-forge-octproj SUBDIR += octave-forge-odebvp SUBDIR += octave-forge-odepkg SUBDIR += octave-forge-optics SUBDIR += octave-forge-optim SUBDIR += octave-forge-optiminterp SUBDIR += octave-forge-outliers SUBDIR += octave-forge-parallel SUBDIR += octave-forge-pdb SUBDIR += octave-forge-plot SUBDIR += octave-forge-pt_br SUBDIR += octave-forge-quaternion SUBDIR += octave-forge-queueing SUBDIR += octave-forge-secs1d SUBDIR += octave-forge-secs2d SUBDIR += octave-forge-secs3d SUBDIR += octave-forge-signal SUBDIR += octave-forge-simp SUBDIR += octave-forge-sockets SUBDIR += octave-forge-sparsersb SUBDIR += octave-forge-specfun SUBDIR += octave-forge-special-matrix SUBDIR += octave-forge-splines SUBDIR += octave-forge-statistics SUBDIR += octave-forge-stk SUBDIR += octave-forge-strings SUBDIR += octave-forge-struct SUBDIR += octave-forge-symband SUBDIR += octave-forge-symbolic SUBDIR += octave-forge-tcl-octave SUBDIR += octave-forge-tisean SUBDIR += octave-forge-tsa SUBDIR += octave-forge-video SUBDIR += octave-forge-zenity SUBDIR += octave-forge-zeromq SUBDIR += ogdf SUBDIR += oleo SUBDIR += openblas SUBDIR += openfst SUBDIR += openlibm SUBDIR += opensolaris-libm SUBDIR += orpie SUBDIR += p5-AI-DecisionTree SUBDIR += p5-AI-Genetic SUBDIR += p5-AI-NeuralNet-BackProp SUBDIR += p5-AI-Perceptron SUBDIR += p5-Algorithm-Combinatorics SUBDIR += p5-Algorithm-CurveFit SUBDIR += p5-Algorithm-KMeans SUBDIR += p5-Algorithm-Munkres SUBDIR += p5-Bit-ShiftReg SUBDIR += p5-Bit-Vector SUBDIR += p5-Bit-Vector-Minimal SUBDIR += p5-CAD-Calc SUBDIR += p5-Chart-Math-Axis SUBDIR += p5-Data-Float SUBDIR += p5-Date-Handler SUBDIR += p5-GIS-Distance SUBDIR += p5-GIS-Distance-Fast SUBDIR += p5-GIS-Distance-Lite SUBDIR += p5-Geo-Coordinates-UTM SUBDIR += p5-Geo-Distance SUBDIR += p5-Geo-Distance-XS SUBDIR += p5-Graph SUBDIR += p5-Math-Algebra-Symbols SUBDIR += p5-Math-Base36 SUBDIR += p5-Math-Base85 SUBDIR += p5-Math-BaseCalc SUBDIR += p5-Math-BaseCnv SUBDIR += p5-Math-Bezier SUBDIR += p5-Math-Bezier-Convert SUBDIR += p5-Math-BigInt SUBDIR += p5-Math-BigInt-FastCalc SUBDIR += p5-Math-BigInt-GMP SUBDIR += p5-Math-BigInt-Lite SUBDIR += p5-Math-BigInt-Pari SUBDIR += p5-Math-BigRat SUBDIR += p5-Math-CDF SUBDIR += p5-Math-Calc-Units SUBDIR += p5-Math-Cephes SUBDIR += p5-Math-Combinatorics SUBDIR += p5-Math-Complex SUBDIR += p5-Math-ConvexHull SUBDIR += p5-Math-Currency SUBDIR += p5-Math-Derivative SUBDIR += p5-Math-Evol SUBDIR += p5-Math-Expr SUBDIR += p5-Math-FFT SUBDIR += p5-Math-FixedPrecision SUBDIR += p5-Math-Fleximal SUBDIR += p5-Math-GMP SUBDIR += p5-Math-GMPf SUBDIR += p5-Math-GMPq SUBDIR += p5-Math-GMPz SUBDIR += p5-Math-GSL SUBDIR += p5-Math-Geometry SUBDIR += p5-Math-Geometry-Planar SUBDIR += p5-Math-Geometry-Planar-GPC SUBDIR += p5-Math-Geometry-Planar-GPC-PolygonXS SUBDIR += p5-Math-Geometry-Planar-Offset SUBDIR += p5-Math-Geometry-Voronoi SUBDIR += p5-Math-Gradient SUBDIR += p5-Math-Int128 SUBDIR += p5-Math-Int64 SUBDIR += p5-Math-Interpolate SUBDIR += p5-Math-Intersection-StraightLine SUBDIR += p5-Math-Logic SUBDIR += p5-Math-MPC SUBDIR += p5-Math-MPFR SUBDIR += p5-Math-Matrix SUBDIR += p5-Math-MatrixReal SUBDIR += p5-Math-NumberCruncher SUBDIR += p5-Math-Pari SUBDIR += p5-Math-Polygon SUBDIR += p5-Math-Polygon-Tree SUBDIR += p5-Math-Polynomial-Solve SUBDIR += p5-Math-Prime-XS SUBDIR += p5-Math-RPN SUBDIR += p5-Math-Random SUBDIR += p5-Math-Random-ISAAC SUBDIR += p5-Math-Random-ISAAC-XS SUBDIR += p5-Math-Random-MT SUBDIR += p5-Math-Random-MT-Auto SUBDIR += p5-Math-Random-OO SUBDIR += p5-Math-Random-Secure SUBDIR += p5-Math-RandomOrg SUBDIR += p5-Math-Round SUBDIR += p5-Math-Round-Var SUBDIR += p5-Math-Sequence SUBDIR += p5-Math-Series SUBDIR += p5-Math-SigFigs SUBDIR += p5-Math-SimpleVariable SUBDIR += p5-Math-Spline SUBDIR += p5-Math-String SUBDIR += p5-Math-Symbolic SUBDIR += p5-Math-Symbolic-Custom-CCompiler SUBDIR += p5-Math-Symbolic-Custom-Contains SUBDIR += p5-Math-Symbolic-Custom-ErrorPropagation SUBDIR += p5-Math-Symbolic-Custom-LaTeXDumper SUBDIR += p5-Math-Symbolic-Custom-Pattern SUBDIR += p5-Math-Symbolic-Custom-Simplification SUBDIR += p5-Math-Symbolic-Custom-Transformation SUBDIR += p5-Math-SymbolicX-BigNum SUBDIR += p5-Math-SymbolicX-Complex SUBDIR += p5-Math-SymbolicX-Error SUBDIR += p5-Math-SymbolicX-Inline SUBDIR += p5-Math-SymbolicX-NoSimplification SUBDIR += p5-Math-SymbolicX-ParserExtensionFactory SUBDIR += p5-Math-SymbolicX-Statistics-Distributions SUBDIR += p5-Math-TrulyRandom SUBDIR += p5-Math-Units SUBDIR += p5-Math-Utils SUBDIR += p5-Math-Vec SUBDIR += p5-Math-VecStat SUBDIR += p5-Math-VectorReal SUBDIR += p5-NetCDF SUBDIR += p5-Number-Compare SUBDIR += p5-Number-Fraction SUBDIR += p5-Number-Misc SUBDIR += p5-Number-Uncertainty SUBDIR += p5-Number-WithError SUBDIR += p5-Number-WithError-LaTeX SUBDIR += p5-Parse-Range SUBDIR += p5-Roman SUBDIR += p5-Set-IntSpan SUBDIR += p5-Set-IntSpan-Fast SUBDIR += p5-Set-IntSpan-Fast-XS SUBDIR += p5-Set-Partition SUBDIR += p5-Set-Window SUBDIR += p5-Statistics-Basic SUBDIR += p5-Statistics-Benford SUBDIR += p5-Statistics-ChiSquare SUBDIR += p5-Statistics-Contingency SUBDIR += p5-Statistics-Descriptive SUBDIR += p5-Statistics-Descriptive-Discrete SUBDIR += p5-Statistics-Distributions SUBDIR += p5-Statistics-Forecast SUBDIR += p5-Statistics-Frequency SUBDIR += p5-Statistics-LTU SUBDIR += p5-Statistics-LineFit SUBDIR += p5-Statistics-Lite SUBDIR += p5-Statistics-OLS SUBDIR += p5-Statistics-R SUBDIR += p5-Statistics-Regression SUBDIR += p5-Statistics-TTest SUBDIR += p5-Task-Math-Symbolic SUBDIR += p5-Text-AsciiTeX SUBDIR += p5-bignum SUBDIR += pantheon-calculator SUBDIR += pari SUBDIR += parmetis SUBDIR += parmgridgen SUBDIR += pdal SUBDIR += pear-Math_BigInteger SUBDIR += pear-Math_Combinatorics SUBDIR += pecl-big_int SUBDIR += pecl-bitset SUBDIR += pecl-bitset2 SUBDIR += pecl-stats SUBDIR += pecl-stats2 SUBDIR += pecl-trader SUBDIR += php56-bcmath SUBDIR += php56-gmp SUBDIR += php70-bcmath SUBDIR += php70-gmp SUBDIR += php71-bcmath SUBDIR += php71-gmp SUBDIR += php72-bcmath SUBDIR += php72-gmp SUBDIR += physcalc SUBDIR += picosat SUBDIR += plman SUBDIR += ploticus SUBDIR += ploticus-nox11 SUBDIR += plplot SUBDIR += plplot-ada SUBDIR += primegen SUBDIR += prng SUBDIR += proofgeneral SUBDIR += pspp SUBDIR += pure-mpfr SUBDIR += pure-rational SUBDIR += py-PyWavelets SUBDIR += py-altgraph SUBDIR += py-apgl SUBDIR += py-basemap SUBDIR += py-basemap-data SUBDIR += py-bitmath SUBDIR += py-bitvector SUBDIR += py-bottleneck SUBDIR += py-cdecimal SUBDIR += py-colormath SUBDIR += py-cryptominisat SUBDIR += py-fastcluster SUBDIR += py-ffc SUBDIR += py-fiat SUBDIR += py-fpconst SUBDIR += py-gato SUBDIR += py-gmpy SUBDIR += py-gmpy2 SUBDIR += py-gnuplot SUBDIR += py-graphillion SUBDIR += py-gsl SUBDIR += py-igraph SUBDIR += py-intspan SUBDIR += py-keras SUBDIR += py-luminol SUBDIR += py-mathdom SUBDIR += py-matplotlib SUBDIR += py-mpmath SUBDIR += py-munkres SUBDIR += py-networkx SUBDIR += py-numarray SUBDIR += py-numeric SUBDIR += py-numexpr SUBDIR += py-numpy SUBDIR += py-nzmath SUBDIR += py-pandas SUBDIR += py-patsy SUBDIR += py-plastex SUBDIR += py-probstat SUBDIR += py-pybloom SUBDIR += py-pycosat SUBDIR += py-pyhull SUBDIR += py-pymc SUBDIR += py-pysparse SUBDIR += py-pyvtk SUBDIR += py-roman SUBDIR += py-scientific SUBDIR += py-statsmodels SUBDIR += py-svgmath SUBDIR += py-symeig SUBDIR += py-sympy SUBDIR += py-theano SUBDIR += py-ufl SUBDIR += py-viper SUBDIR += py-yt SUBDIR += qalculate SUBDIR += qd SUBDIR += qhull SUBDIR += qhull5 SUBDIR += qrupdate SUBDIR += qtiplot SUBDIR += qtiplot-doc SUBDIR += qtoctave SUBDIR += qwtplot3d-qt4 SUBDIR += randlib SUBDIR += rapid SUBDIR += reduce SUBDIR += reed-solomon SUBDIR += rexx-regmath SUBDIR += rkward-kde4 SUBDIR += rngstreams SUBDIR += rocs SUBDIR += rpcalc SUBDIR += rpy SUBDIR += rpy2 SUBDIR += rubygem-algebra SUBDIR += rubygem-expression_parser SUBDIR += rubygem-fftw3 SUBDIR += rubygem-narray SUBDIR += rubygem-narray_miss SUBDIR += rubygem-numru-misc SUBDIR += rubygem-numru-units SUBDIR += rubygem-rb-gsl SUBDIR += saga SUBDIR += sage SUBDIR += sc SUBDIR += sc-im SUBDIR += scalapack SUBDIR += scilab SUBDIR += scilab-toolbox-sivp SUBDIR += scilab-toolbox-swt SUBDIR += sdpa SUBDIR += sdpara SUBDIR += sfft SUBDIR += sfst SUBDIR += simd-viterbi SUBDIR += slatec SUBDIR += slgrace SUBDIR += snns SUBDIR += solitaire SUBDIR += sound-of-sorting SUBDIR += spar SUBDIR += spblas SUBDIR += speedcrunch SUBDIR += spooles SUBDIR += spooles-mpich SUBDIR += stp SUBDIR += suitesparse SUBDIR += superlu SUBDIR += superlu_mt SUBDIR += surf SUBDIR += tablix SUBDIR += taucs SUBDIR += testu01 SUBDIR += tetgen SUBDIR += timbl SUBDIR += tomsfastmath SUBDIR += topaz SUBDIR += triangle SUBDIR += trlan SUBDIR += truthtable SUBDIR += tvmet SUBDIR += ufc SUBDIR += ump SUBDIR += units SUBDIR += unuran SUBDIR += viennacl SUBDIR += vowpal_wabbit SUBDIR += vtk5 SUBDIR += vtk5-data SUBDIR += vtk6 SUBDIR += wcalc SUBDIR += wfmath SUBDIR += why3 SUBDIR += wingz3 SUBDIR += wxMaxima SUBDIR += x12arima SUBDIR += xblas SUBDIR += xfce4-calculator-plugin SUBDIR += xgraph SUBDIR += xlapack SUBDIR += xldlas SUBDIR += xplot SUBDIR += xppaut SUBDIR += xspread SUBDIR += yacas SUBDIR += z3 .include Index: head/math/libmesh/Makefile =================================================================== --- head/math/libmesh/Makefile (nonexistent) +++ head/math/libmesh/Makefile (revision 456854) @@ -0,0 +1,82 @@ +# Created by: Yuri Victorovich +# $FreeBSD$ + +PORTNAME= libmesh +DISTVERSIONPREFIX= v +DISTVERSION= 1.2.1 +CATEGORIES= math + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Numerical simulation of partial differential equations + +LICENSE= LGPL21 +LICENSE_FILE= ${WRKSRC}/COPYING + +BUILD_DEPENDS= eigen>0:math/eigen3 +LIB_DEPENDS= libboost_system.so:devel/boost-libs + +USES= autoreconf gmake libtool +GNU_CONFIGURE= yes +USE_GITHUB= yes +GH_ACCOUNT= libMesh +CONFIGURE_ARGS= --with-methods=opt \ + --with-thread-model=pthread \ + --datarootdir=${DATADIR} \ + --enable-amr \ + --disable-strict-lgpl \ + --enable-tetgen \ + --enable-triagle \ + --with-boost=${LOCALBASE} \ + --with-eigen-include=${LOCALBASE}/include/eigen3 \ + --disable-netcdf --disable-netcdf-4 # https://github.com/libMesh/libmesh/issues/1542 +MAKE_ARGS= LDFLAGS="-pthread -lexecinfo" +USE_LDCONFIG= yes + +OPTIONS_DEFINE= GLPK HDF5 MPI SFCURVES EXAMPLES +OPTIONS_DEFAULT= MPI SFCURVES +GLPK_DESC= Glpk linear programming solver library +SFCURVES_DESC= Sfcurves library + +GLPK_CONFIGURE_ENABLE= glpk +GLPK_LIB_DEPENDS= libglpk.so:math/glpk +HDF5_CONFIGURE_ENABLE= hdf5 +HDF5_LIB_DEPENDS= libhdf5.so:science/hdf5 +MPI_CONFIGURE_ENABLE= mpi +FSCURVES_CONFIGURE_ENABLE= sfc +EXAMPLES_CONFIGURE_ENABLE= examples +EXAMPLES_VARS= PKGMESSAGE=pkg-message-examples +SUB_FILES= pkg-message-examples + +PORTEXAMPLES= * + +post-extract: + @${FIND} ${WRKSRC} -name "*.orig" -delete + +post-install: + @${MKDIR} ${STAGEDIR}${DATADIR} + @${MV} ${STAGEDIR}${PREFIX}/etc/libmesh/Make.common ${STAGEDIR}${DATADIR} + @cd ${STAGEDIR}${PREFIX} && ${RM} -r \ + etc/libmesh \ + Make.common \ + contrib \ + libdata/pkgconfig/Make.common # https://github.com/libMesh/libmesh/issues/1539 + @${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/libmesh_opt.so.0.0.0 + +post-install-EXAMPLES-on: + # https://github.com/libMesh/libmesh/issues/1541 + @${MV} ${STAGEDIR}${PREFIX}/examples ${STAGEDIR}${EXAMPLESDIR} + @${FIND} ${STAGEDIR}${EXAMPLESDIR} -name Makefile | ${XARGS} ${REINPLACE_CMD} -i '' -e ' \ + s|LIBMESH_DIR ?= .*|LIBMESH_DIR ?= ${PREFIX}| ; \ + s|$$(LIBMESH_DIR)/Make.common|${DATADIR}/Make.common| ; \ + s|LIBMESH_DIR/examples|LIBMESH_DIR/share/examples/${PORTNAME}| ; \ + s|$$(libmesh_LDFLAGS)|$$(libmesh_LDFLAGS) -pthread|' + @${FIND} ${STAGEDIR}${EXAMPLESDIR} -name run.sh | ${XARGS} ${CHMOD} +x + @${FIND} ${STAGEDIR}${EXAMPLESDIR} -name run.sh | ${XARGS} ${REINPLACE_CMD} -i '' -e ' \ + s|#set -x|export LIBMESH_DIR=${PREFIX}| ; \ + s|#!/bin/bash|#!${LOCALBASE}/bin/bash| ; \ + s|LIBMESH_DIR/examples|LIBMESH_DIR/share/examples/${PORTNAME}| ; \ + s|reference_elements|share/${PORTNAME}/reference_elements|' + @${REINPLACE_CMD} -i '' -e 's|libmesh_LIBTOOL ?= /usr/local/contrib/bin/libtool|libmesh_LIBTOOL ?= libtool|' \ + ${STAGEDIR}${DATADIR}/Make.common + +.include Property changes on: head/math/libmesh/Makefile ___________________________________________________________________ Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:keywords ## -0,0 +1 ## +FreeBSD=%H \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/math/libmesh/distinfo =================================================================== --- head/math/libmesh/distinfo (nonexistent) +++ head/math/libmesh/distinfo (revision 456854) @@ -0,0 +1,3 @@ +TIMESTAMP = 1513454802 +SHA256 (libMesh-libmesh-v1.2.1_GH0.tar.gz) = 58f5a0ccc4858aa9ff6b3af9ee23b196e5ff5210708a6bb582102fcce1adeb1f +SIZE (libMesh-libmesh-v1.2.1_GH0.tar.gz) = 31265692 Property changes on: head/math/libmesh/distinfo ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/math/libmesh/files/patch-Makefile.am =================================================================== --- head/math/libmesh/files/patch-Makefile.am (nonexistent) +++ head/math/libmesh/files/patch-Makefile.am (revision 456854) @@ -0,0 +1,14 @@ +--- Makefile.am.orig 2017-07-25 16:33:31 UTC ++++ Makefile.am +@@ -102,9 +102,8 @@ install-data-hook: + fi + cd $(DESTDIR)$(prefix) && rm -f Make.common && $(LN_S) -f etc/libmesh/Make.common Make.common + cat $(DESTDIR)$(libmesh_configdir)/libmesh-config | $(SED) "s/has_been_installed=no/has_been_installed=yes/g" > $(DESTDIR)$(libmesh_configdir)/libmesh-config.installed +- mv $(DESTDIR)$(libmesh_configdir)/libmesh-config.installed $(DESTDIR)$(libmesh_configdir)/libmesh-config && chmod +x $(DESTDIR)$(libmesh_configdir)/libmesh-config +- cat $(DESTDIR)$(prefix)/contrib/bin/libtool | $(SED) "s/-l //g" > $(DESTDIR)$(prefix)/contrib/bin/libtool.fixed +- mv $(DESTDIR)$(prefix)/contrib/bin/libtool.fixed $(DESTDIR)$(prefix)/contrib/bin/libtool && chmod +x $(DESTDIR)$(prefix)/contrib/bin/libtool ++ install -c $(DESTDIR)$(libmesh_configdir)/libmesh-config.installed $(DESTDIR)$(libmesh_configdir)/libmesh-config ++ rm $(DESTDIR)$(libmesh_configdir)/libmesh-config.installed + + + # this rule invokes emacs on each source file to remove trailing whitespace. Property changes on: head/math/libmesh/files/patch-Makefile.am ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/math/libmesh/files/patch-contrib_netcdf_4.4.1.1_configure.ac =================================================================== --- head/math/libmesh/files/patch-contrib_netcdf_4.4.1.1_configure.ac (nonexistent) +++ head/math/libmesh/files/patch-contrib_netcdf_4.4.1.1_configure.ac (revision 456854) @@ -0,0 +1,11 @@ +--- contrib/netcdf/4.4.1.1/configure.ac.orig 2017-07-25 16:33:31 UTC ++++ contrib/netcdf/4.4.1.1/configure.ac +@@ -926,7 +926,7 @@ if test "x$enable_netcdf_4" = xyes; then + if test "x$nc_dlfcn_h_missing" = xyes; then + AC_MSG_ERROR([Cannot find dlfcn.h, yet --enable-dynamic-loading was used.]) + fi +- AC_CHECK_LIB([dl],[dlopen], [], [AC_MSG_ERROR([Can't find or link against libdf. See config.log for errors.])]) ++ #AC_CHECK_LIB([dl],[dlopen], [], [AC_MSG_ERROR([Can't find or link against libdf. See config.log for errors.])]) + AC_DEFINE([USE_LIBDL],[1], [if true, enable dynamic loading support]) + fi + Property changes on: head/math/libmesh/files/patch-contrib_netcdf_4.4.1.1_configure.ac ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/math/libmesh/files/patch-m4_libtool.m4 =================================================================== --- head/math/libmesh/files/patch-m4_libtool.m4 (nonexistent) +++ head/math/libmesh/files/patch-m4_libtool.m4 (revision 456854) @@ -0,0 +1,20 @@ +--- m4/libtool.m4.orig 2017-07-25 16:33:31 UTC ++++ m4/libtool.m4 +@@ -1948,7 +1948,7 @@ else + darwin*) + # if libdl is installed we need to link against it + AC_CHECK_LIB([dl], [dlopen], +- [lt_cv_dlopen=dlopen lt_cv_dlopen_libs=-ldl],[ ++ [lt_cv_dlopen=dlopen lt_cv_dlopen_libs=],[ + lt_cv_dlopen=dyld + lt_cv_dlopen_libs= + lt_cv_dlopen_self=yes +@@ -1971,7 +1971,7 @@ else + [AC_CHECK_FUNC([dlopen], + [lt_cv_dlopen=dlopen], + [AC_CHECK_LIB([dl], [dlopen], +- [lt_cv_dlopen=dlopen lt_cv_dlopen_libs=-ldl], ++ [lt_cv_dlopen=dlopen lt_cv_dlopen_libs=], + [AC_CHECK_LIB([svld], [dlopen], + [lt_cv_dlopen=dlopen lt_cv_dlopen_libs=-lsvld], + [AC_CHECK_LIB([dld], [dld_link], Property changes on: head/math/libmesh/files/patch-m4_libtool.m4 ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/math/libmesh/files/pkg-message-examples.in =================================================================== --- head/math/libmesh/files/pkg-message-examples.in (nonexistent) +++ head/math/libmesh/files/pkg-message-examples.in (revision 456854) @@ -0,0 +1,13 @@ +====================================================================== +You installed libMesh, the library for numerical mesh simulations. + +You can run examples using for instance such command: + +$ cd %%EXAMPLESDIR%%/adaptivity/ex3 && gmake example-opt && ./run.sh + +Before running examples, please allow your user the write access: + +# chown -R {your-user}:users %%EXAMPLESDIR%% + +Examples require bash, gmake, libtool installed. +====================================================================== Property changes on: head/math/libmesh/files/pkg-message-examples.in ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/math/libmesh/pkg-descr =================================================================== --- head/math/libmesh/pkg-descr (nonexistent) +++ head/math/libmesh/pkg-descr (revision 456854) @@ -0,0 +1,12 @@ +The libMesh library provides a framework for the numerical simulation of partial +differential equations using arbitrary unstructured discretizations on serial +and parallel platforms. A major goal of the library is to provide support for +adaptive mesh refinement (AMR) computations in parallel while allowing a +research scientist to focus on the physics they are modeling. + +libMesh is based on this publication: +A C++ Library for Parallel Adaptive Mesh Refinement/Coarsening Simulations," +Engineering with Computers, vol. 22, no. 3-4, pp. 237-254, 2006, +http://dx.doi.org/10.1007/s00366-006-0049-3 + +WWW: http://libmesh.github.io Property changes on: head/math/libmesh/pkg-descr ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/math/libmesh/pkg-plist =================================================================== --- head/math/libmesh/pkg-plist (nonexistent) +++ head/math/libmesh/pkg-plist (revision 456854) @@ -0,0 +1,456 @@ +bin/calculator-opt +bin/compare-opt +bin/fparser_parse-opt +bin/getpot_parse-opt +bin/libmesh-config +bin/meshavg-opt +bin/meshbcid-opt +bin/meshdiff-opt +bin/meshid-opt +bin/meshnorm-opt +bin/meshplot-opt +bin/meshtool-opt +bin/output_libmesh_version-opt +bin/projection-opt +bin/solution_components-opt +bin/splitter-opt +include/libmesh/abaqus_io.h +include/libmesh/adaptive_time_solver.h +include/libmesh/adjoint_refinement_estimator.h +include/libmesh/adjoint_residual_error_estimator.h +include/libmesh/analytic_function.h +include/libmesh/auto_ptr.h +include/libmesh/boundary_info.h +include/libmesh/boundary_mesh.h +include/libmesh/boundary_volume_solution_transfer.h +include/libmesh/bounding_box.h +include/libmesh/cell.h +include/libmesh/cell_hex.h +include/libmesh/cell_hex20.h +include/libmesh/cell_hex27.h +include/libmesh/cell_hex8.h +include/libmesh/cell_inf.h +include/libmesh/cell_inf_hex.h +include/libmesh/cell_inf_hex16.h +include/libmesh/cell_inf_hex18.h +include/libmesh/cell_inf_hex8.h +include/libmesh/cell_inf_prism.h +include/libmesh/cell_inf_prism12.h +include/libmesh/cell_inf_prism6.h +include/libmesh/cell_prism.h +include/libmesh/cell_prism15.h +include/libmesh/cell_prism18.h +include/libmesh/cell_prism6.h +include/libmesh/cell_pyramid.h +include/libmesh/cell_pyramid13.h +include/libmesh/cell_pyramid14.h +include/libmesh/cell_pyramid5.h +include/libmesh/cell_tet.h +include/libmesh/cell_tet10.h +include/libmesh/cell_tet4.h +include/libmesh/centroid_partitioner.h +include/libmesh/checkpoint_io.h +include/libmesh/compare_types.h +include/libmesh/composite_fem_function.h +include/libmesh/composite_function.h +include/libmesh/condensed_eigen_system.h +include/libmesh/const_fem_function.h +include/libmesh/const_function.h +include/libmesh/continuation_system.h +include/libmesh/coupling_matrix.h +include/libmesh/default_coupling.h +include/libmesh/dense_matrix.h +include/libmesh/dense_matrix_base.h +include/libmesh/dense_submatrix.h +include/libmesh/dense_subvector.h +include/libmesh/dense_vector.h +include/libmesh/dense_vector_base.h +include/libmesh/dg_fem_context.h +include/libmesh/diff_context.h +include/libmesh/diff_physics.h +include/libmesh/diff_qoi.h +include/libmesh/diff_solver.h +include/libmesh/diff_system.h +include/libmesh/direct_solution_transfer.h +include/libmesh/dirichlet_boundaries.h +include/libmesh/discontinuity_measure.h +include/libmesh/distributed_mesh.h +include/libmesh/distributed_vector.h +include/libmesh/dof_map.h +include/libmesh/dof_object.h +include/libmesh/dtk_adapter.h +include/libmesh/dtk_evaluator.h +include/libmesh/dtk_solution_transfer.h +include/libmesh/edge.h +include/libmesh/edge_edge2.h +include/libmesh/edge_edge3.h +include/libmesh/edge_edge4.h +include/libmesh/edge_inf_edge2.h +include/libmesh/eigen_core_support.h +include/libmesh/eigen_preconditioner.h +include/libmesh/eigen_solver.h +include/libmesh/eigen_sparse_linear_solver.h +include/libmesh/eigen_sparse_matrix.h +include/libmesh/eigen_sparse_vector.h +include/libmesh/eigen_system.h +include/libmesh/eigen_time_solver.h +include/libmesh/elem.h +include/libmesh/elem_assembly.h +include/libmesh/elem_cutter.h +include/libmesh/elem_hash.h +include/libmesh/elem_quality.h +include/libmesh/elem_range.h +include/libmesh/ensight_io.h +include/libmesh/enum_convergence_flags.h +include/libmesh/enum_eigen_solver_type.h +include/libmesh/enum_elem_quality.h +include/libmesh/enum_elem_type.h +include/libmesh/enum_error_estimator_type.h +include/libmesh/enum_fe_family.h +include/libmesh/enum_inf_map_type.h +include/libmesh/enum_io_package.h +include/libmesh/enum_norm_type.h +include/libmesh/enum_order.h +include/libmesh/enum_parallel_type.h +include/libmesh/enum_point_locator_type.h +include/libmesh/enum_preconditioner_type.h +include/libmesh/enum_quadrature_type.h +include/libmesh/enum_solver_package.h +include/libmesh/enum_solver_type.h +include/libmesh/enum_subset_solve_mode.h +include/libmesh/enum_xdr_mode.h +include/libmesh/equation_systems.h +include/libmesh/error_estimator.h +include/libmesh/error_vector.h +include/libmesh/euler2_solver.h +include/libmesh/euler_solver.h +include/libmesh/exact_error_estimator.h +include/libmesh/exact_solution.h +include/libmesh/exodusII_io.h +include/libmesh/explicit_system.h +include/libmesh/face.h +include/libmesh/face_inf_quad.h +include/libmesh/face_inf_quad4.h +include/libmesh/face_inf_quad6.h +include/libmesh/face_quad.h +include/libmesh/face_quad4.h +include/libmesh/face_quad4_shell.h +include/libmesh/face_quad8.h +include/libmesh/face_quad9.h +include/libmesh/face_tri.h +include/libmesh/face_tri3.h +include/libmesh/face_tri3_shell.h +include/libmesh/face_tri3_subdivision.h +include/libmesh/face_tri6.h +include/libmesh/factory.h +include/libmesh/fe.h +include/libmesh/fe_abstract.h +include/libmesh/fe_base.h +include/libmesh/fe_compute_data.h +include/libmesh/fe_interface.h +include/libmesh/fe_macro.h +include/libmesh/fe_map.h +include/libmesh/fe_transformation_base.h +include/libmesh/fe_type.h +include/libmesh/fe_xyz_map.h +include/libmesh/fem_context.h +include/libmesh/fem_function_base.h +include/libmesh/fem_physics.h +include/libmesh/fem_system.h +include/libmesh/first_order_unsteady_solver.h +include/libmesh/fourth_error_estimators.h +include/libmesh/fparser.hh +include/libmesh/fparser_ad.hh +include/libmesh/frequency_system.h +include/libmesh/fro_io.h +include/libmesh/function_base.h +include/libmesh/getpot.h +include/libmesh/ghost_point_neighbors.h +include/libmesh/ghosting_functor.h +include/libmesh/gmsh_io.h +include/libmesh/gmv_io.h +include/libmesh/gnuplot_io.h +include/libmesh/h1_fe_transformation.h +include/libmesh/hashword.h +include/libmesh/hcurl_fe_transformation.h +include/libmesh/hilbert_sfc_partitioner.h +include/libmesh/hp_coarsentest.h +include/libmesh/hp_selector.h +include/libmesh/hp_singular.h +include/libmesh/id_types.h +include/libmesh/ignore_warnings.h +include/libmesh/implicit_system.h +include/libmesh/inf_elem_builder.h +include/libmesh/inf_fe.h +include/libmesh/inf_fe_instantiate_1D.h +include/libmesh/inf_fe_instantiate_2D.h +include/libmesh/inf_fe_instantiate_3D.h +include/libmesh/inf_fe_macro.h +include/libmesh/jump_error_estimator.h +include/libmesh/kelly_error_estimator.h +include/libmesh/libmesh.h +include/libmesh/libmesh_C_isnan.h +include/libmesh/libmesh_base.h +include/libmesh/libmesh_common.h +include/libmesh/libmesh_config.h +include/libmesh/libmesh_documentation.h +include/libmesh/libmesh_exceptions.h +include/libmesh/libmesh_logging.h +include/libmesh/libmesh_nullptr.h +include/libmesh/libmesh_singleton.h +include/libmesh/libmesh_version.h +include/libmesh/linear_implicit_system.h +include/libmesh/linear_partitioner.h +include/libmesh/linear_solver.h +include/libmesh/location_maps.h +include/libmesh/mapped_subdomain_partitioner.h +include/libmesh/mapvector.h +include/libmesh/matlab_io.h +include/libmesh/medit_io.h +include/libmesh/memory_solution_history.h +include/libmesh/mesh.h +include/libmesh/mesh_base.h +include/libmesh/mesh_communication.h +include/libmesh/mesh_function.h +include/libmesh/mesh_generation.h +include/libmesh/mesh_input.h +include/libmesh/mesh_inserter_iterator.h +include/libmesh/mesh_modification.h +include/libmesh/mesh_output.h +include/libmesh/mesh_refinement.h +include/libmesh/mesh_serializer.h +include/libmesh/mesh_smoother.h +include/libmesh/mesh_smoother_laplace.h +include/libmesh/mesh_smoother_vsmoother.h +include/libmesh/mesh_subdivision_support.h +include/libmesh/mesh_tetgen_interface.h +include/libmesh/mesh_tetgen_wrapper.h +include/libmesh/mesh_tools.h +include/libmesh/mesh_triangle_holes.h +include/libmesh/mesh_triangle_interface.h +include/libmesh/mesh_triangle_wrapper.h +include/libmesh/meshfree_interpolation.h +include/libmesh/meshfree_solution_transfer.h +include/libmesh/meshfunction_solution_transfer.h +include/libmesh/metis_csr_graph.h +include/libmesh/metis_partitioner.h +include/libmesh/morton_sfc_partitioner.h +include/libmesh/multi_predicates.h +include/libmesh/namebased_io.h +include/libmesh/nanoflann.hpp +include/libmesh/nemesis_io.h +include/libmesh/newmark_solver.h +include/libmesh/newmark_system.h +include/libmesh/newton_solver.h +include/libmesh/nlopt_optimization_solver.h +include/libmesh/no_solution_history.h +include/libmesh/node.h +include/libmesh/node_elem.h +include/libmesh/node_range.h +include/libmesh/nonlinear_implicit_system.h +include/libmesh/nonlinear_solver.h +include/libmesh/null_output_iterator.h +include/libmesh/number_lookups.h +include/libmesh/numeric_vector.h +include/libmesh/off_io.h +include/libmesh/optimization_solver.h +include/libmesh/optimization_system.h +include/libmesh/ostream_proxy.h +include/libmesh/parallel.h +include/libmesh/parallel_algebra.h +include/libmesh/parallel_bin_sorter.h +include/libmesh/parallel_communicator_specializations +include/libmesh/parallel_elem.h +include/libmesh/parallel_ghost_sync.h +include/libmesh/parallel_histogram.h +include/libmesh/parallel_implementation.h +include/libmesh/parallel_mesh.h +include/libmesh/parallel_node.h +include/libmesh/parallel_object.h +include/libmesh/parallel_sort.h +include/libmesh/parameter_accessor.h +include/libmesh/parameter_multiaccessor.h +include/libmesh/parameter_multipointer.h +include/libmesh/parameter_pointer.h +include/libmesh/parameter_vector.h +include/libmesh/parameters.h +include/libmesh/parmetis_partitioner.h +include/libmesh/parsed_fem_function.h +include/libmesh/parsed_fem_function_parameter.h +include/libmesh/parsed_function.h +include/libmesh/parsed_function_parameter.h +include/libmesh/partitioner.h +include/libmesh/patch.h +include/libmesh/patch_recovery_error_estimator.h +include/libmesh/perf_log.h +include/libmesh/perfmon.h +include/libmesh/periodic_boundaries.h +include/libmesh/periodic_boundary.h +include/libmesh/periodic_boundary_base.h +include/libmesh/petsc_auto_fieldsplit.h +include/libmesh/petsc_diff_solver.h +include/libmesh/petsc_linear_solver.h +include/libmesh/petsc_macro.h +include/libmesh/petsc_matrix.h +include/libmesh/petsc_nonlinear_solver.h +include/libmesh/petsc_preconditioner.h +include/libmesh/petsc_solver_exception.h +include/libmesh/petsc_vector.h +include/libmesh/petscdmlibmesh.h +include/libmesh/plane.h +include/libmesh/plt_loader.h +include/libmesh/point.h +include/libmesh/point_locator_base.h +include/libmesh/point_locator_tree.h +include/libmesh/point_neighbor_coupling.h +include/libmesh/pool_allocator.h +include/libmesh/postscript_io.h +include/libmesh/preconditioner.h +include/libmesh/print_trace.h +include/libmesh/qoi_set.h +include/libmesh/quadrature.h +include/libmesh/quadrature_clough.h +include/libmesh/quadrature_composite.h +include/libmesh/quadrature_conical.h +include/libmesh/quadrature_gauss.h +include/libmesh/quadrature_gauss_lobatto.h +include/libmesh/quadrature_gm.h +include/libmesh/quadrature_grid.h +include/libmesh/quadrature_jacobi.h +include/libmesh/quadrature_monomial.h +include/libmesh/quadrature_simpson.h +include/libmesh/quadrature_trap.h +include/libmesh/radial_basis_functions.h +include/libmesh/radial_basis_interpolation.h +include/libmesh/raw_accessor.h +include/libmesh/rb_assembly_expansion.h +include/libmesh/rb_construction.h +include/libmesh/rb_construction_base.h +include/libmesh/rb_data_deserialization.h +include/libmesh/rb_data_serialization.h +include/libmesh/rb_eim_assembly.h +include/libmesh/rb_eim_construction.h +include/libmesh/rb_eim_evaluation.h +include/libmesh/rb_eim_theta.h +include/libmesh/rb_evaluation.h +include/libmesh/rb_parameters.h +include/libmesh/rb_parametrized.h +include/libmesh/rb_parametrized_function.h +include/libmesh/rb_scm_construction.h +include/libmesh/rb_scm_evaluation.h +include/libmesh/rb_temporal_discretization.h +include/libmesh/rb_theta.h +include/libmesh/rb_theta_expansion.h 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