Index: head/biology/bwa/Makefile
===================================================================
--- head/biology/bwa/Makefile	(revision 455044)
+++ head/biology/bwa/Makefile	(revision 455045)
@@ -1,38 +1,42 @@
 # Created by: Jason Bacon <bacon4000@gmail.com>
 # $FreeBSD$
 
 PORTNAME=	bwa
-PORTVERSION=	0.7.9a
+PORTVERSION=	0.7.17
+DISTVERSIONPREFIX=v
 CATEGORIES=	biology
-MASTER_SITES=	SF/bio-bwa/
 
 MAINTAINER=	bacon4000@gmail.com
 COMMENT=	Burrows-Wheeler sequence aligner
 
 LICENSE=	GPLv3
 
+# From 0.7.9a: Recheck for 0.7.17.
 BROKEN_aarch64=		fails to compile: invalid conversion between vector type and integer type
 BROKEN_armv6=		fails to compile: invalid conversion between vector type and integer type
 BROKEN_mips=		fails to compile: cc1: unrecognized command line option "-msse2"
 BROKEN_mips64=		fails to compile: cc1: unrecognized command line option "-msse2"
 BROKEN_powerpc64=	fails to compile: ksw.c: emmintrin.h: No such file or directory
 
-USES=		perl5 shebangfix tar:bzip2
+USES=		gmake perl5 shebangfix tar:bzip2
 SHEBANG_FILES=	qualfa2fq.pl xa2multi.pl
 USE_PERL5=	run
+
+USE_GITHUB=	yes
+GH_ACCOUNT=	lh3
 
 PLIST_FILES=	bin/bwa bin/qualfa2fq.pl bin/xa2multi.pl man/man1/bwa.1.gz
 
 .include <bsd.port.pre.mk>
 
 .if ${ARCH} == amd64 || ${ARCH} == i386
 # Avoid #error in emmintrin.h
 CFLAGS+=	-msse2
 .endif
 
 do-install:
 	${INSTALL_PROGRAM} ${WRKSRC}/bwa ${STAGEDIR}${PREFIX}/bin
 	${INSTALL_SCRIPT} ${WRKSRC}/*.pl ${STAGEDIR}${PREFIX}/bin
 	${INSTALL_MAN} ${WRKSRC}/*.1 ${STAGEDIR}${MAN1PREFIX}/man/man1
 
 .include <bsd.port.post.mk>
Index: head/biology/bwa/distinfo
===================================================================
--- head/biology/bwa/distinfo	(revision 455044)
+++ head/biology/bwa/distinfo	(revision 455045)
@@ -1,2 +1,3 @@
-SHA256 (bwa-0.7.9a.tar.bz2) = f5ad30e4e5ea86a8dcd6febcb6f620a75c82b03024f64a572017c295a962eadc
-SIZE (bwa-0.7.9a.tar.bz2) = 166193
+TIMESTAMP = 1511844744
+SHA256 (lh3-bwa-v0.7.17_GH0.tar.gz) = 980b9591b61c60042c4a39b9e31ccaad8d17ff179d44d347997825da3fdf47fd
+SIZE (lh3-bwa-v0.7.17_GH0.tar.gz) = 232593