Index: head/databases/grass7/Makefile =================================================================== --- head/databases/grass7/Makefile (revision 452601) +++ head/databases/grass7/Makefile (revision 452602) @@ -1,176 +1,176 @@ # Created by: Mikael URANKAR and Loïc BARTOLETTI # $FreeBSD$ PORTNAME= grass PORTVERSION= 7.2.2 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= databases geography MASTER_SITES= http://grass.osgeo.org/%SUBDIR%/ \ http://grass.cict.fr/%SUBDIR%/ \ http://grass.fbk.eu/%SUBDIR%/ \ http://grass.gis-lab.info/%SUBDIR%/ \ http://grass.meteo.uni.wroc.pl/%SUBDIR%/ \ http://grass.polytechnic.edu.na/%SUBDIR%/ \ http://grass.unibuc.ro/%SUBDIR%/ \ http://mirrors.ibiblio.org/grass/%SUBDIR%/ \ http://pinus.gntech.ac.kr/grass/%SUBDIR%/ \ http://wgbis.ces.iisc.ernet.in/grass/%SUBDIR%/ \ http://wgrass.media.osaka-cu.ac.jp/grassh/%SUBDIR%/ MASTER_SITE_SUBDIR= grass72/source PKGNAMESUFFIX= 7 MAINTAINER= lbartoletti@tuxfamily.org COMMENT= Open source Geographical Information System (GIS) LICENSE= GPLv2+ LICENSE_FILE= ${WRKSRC}/GPL.TXT BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy>=1.2:math/py-numpy LIB_DEPENDS= libgdal.so:graphics/gdal \ libpng.so:graphics/png \ libproj.so:graphics/proj \ libtiff.so:graphics/tiff \ libfftw3.so:math/fftw3 \ libfontconfig.so:x11-fonts/fontconfig \ libfreetype.so:print/freetype2 \ libgeos.so:graphics/geos RUN_DEPENDS= bash:shells/bash USES= fortran gettext gmake iconv jpeg perl5 pkgconfig python:2 \ readline shebangfix tk SHEBANG_LANG= nviz nviz_OLD_CMD= nviz nviz_CMD= ${PREFIX}/${GRASS_INST_DIR}/bin/nviz USE_XORG= sm ice x11 xext xi xmu xrender xt USE_GL= gl glu USE_GNOME= cairo USE_WX= 3.0 WX_COMPS= wx:build python:run USE_GCC= yes GNU_CONFIGURE= yes CONFIGURE_ENV= PERL="${PERL}" CONFIGURE_ARGS= --with-includes=${LOCALBASE}/include \ --with-libs=${LOCALBASE}/lib \ --with-opengl-includes=${LOCALBASE}/include/ \ --with-opengl-libs=${LOCALBASE}/lib/ \ --with-freetype \ --with-freetype-includes=${LOCALBASE}/include/freetype2 \ --with-blas \ --with-lapack \ --with-cairo \ --with-nls \ --with-readline \ --enable-largefile \ --with-wxwidgets=${WX_CONFIG} \ --with-proj-share=${LOCALBASE}/share/proj \ --with-geos=${LOCALBASE}/bin/geos-config \ --with-gdal=${LOCALBASE}/bin/gdal-config \ --with-pthread=yes \ --with-openmp ALL_TARGET= default USE_LDCONFIG= ${PREFIX}/${GRASS_INST_DIR}/lib MAKE_JOBS_UNSAFE=yes MAKE_ENV+= TARGET="${CONFIGURE_TARGET}" PLIST_SUB= GRASS_INST_DIR="${GRASS_INST_DIR}" \ VERSION="${PORTVERSION}" \ VER="${PORTVERSION:R:C/\.//}" BROKEN_sparc64= Does not configure on sparc64 OPTIONS_DEFINE= ATLAS LAS MOTIF NETCDF PDAL OPTIONS_MULTI= DB OPTIONS_MULTI_DB= MYSQL ODBC PGSQL SQLITE OPTIONS_DEFAULT= LAS PDAL PGSQL SQLITE OPTIONS_SUB= yes ATLAS_DESC= Use ATLAS for BLAS and LAPACK LAS_DESC= Enable LiDAR modules PDAL_DESC= Enable points cloud data modules ATLAS_USES= blaslapack:atlas ATLAS_USES_OFF= blaslapack DB_DESC= Database support LAS_CONFIGURE_ON= --with-liblas=yes LAS_LIB_DEPENDS= liblas.so:devel/liblas \ libboost_program_options.so:devel/boost-libs \ libboost_thread.so:devel/boost-libs \ libgeotiff.so:graphics/libgeotiff MOTIF_USES= motif MOTIF_USE= GL=glw MOTIF_CONFIGURE_ON= --with-motif --with-glw MYSQL_USE= MYSQL=yes MYSQL_CONFIGURE_ON= --with-mysql \ --with-mysql-includes=${LOCALBASE}/include/mysql \ --with-mysql-libs=${LOCALBASE}/lib/mysql NETCDF_CONFIGURE_ON= --with-netcdf=${LOCALBASE}/bin/nc-config NETCDF_LIB_DEPENDS= libnetcdf.so:science/netcdf ODBC_LIB_DEPENDS= libodbc.so:databases/unixODBC ODBC_CONFIGURE_ON= --with-odbc PDAL_CONFIGURE_ON= --with-pdal=${LOCALBASE}/bin/pdal-config PDAL_LIB_DEPENDS= libpdal_base.so:math/pdal PGSQL_USES= pgsql PGSQL_CONFIGURE_ON= --with-postgres SQLITE_USES= sqlite SQLITE_CONFIGURE_ON= --with-sqlite SQLITE_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}sqlite3>0:databases/py-sqlite3 .include .if !defined (GRASS_INST_DIR) GRASS_INST_DIR= ${PORTNAME}-${PORTVERSION} .endif MANDIRS= ${PREFIX}/grass-${PORTVERSION}/docs/man/man1 post-patch: @${REINPLACE_CMD} -e \ 's|-lblas|${BLASLIB}|g ; \ s|-llapack|${LAPACKLIB}|g ; \ s|g2c|f2c|g' ${WRKSRC}/configure @${REINPLACE_CMD} -e \ 's|make -C|$$(MAKE) -C| ; \ /^BINDIR/s|=.*|= $${DESTDIR}$${UNIX_BIN}| ; \ /test /s| $$(INST_DIR)| $${DESTDIR}$${INST_DIR}|g ; \ /tar /s| $$(INST_DIR)| $${DESTDIR}$${INST_DIR}|g ; \ /chmod /s| $$(INST_DIR)| $${DESTDIR}$${INST_DIR}|g ; \ /tar /s| $$(INST_DIR)| $${DESTDIR}$${INST_DIR}|g ; \ /rm /s| $$(INST_DIR)| $${DESTDIR}$${INST_DIR}|g ; \ /$$(MAKE) /s| $$(INST_DIR)| $${DESTDIR}$${INST_DIR}|g ; \ /^$$(INST_DIR)\//s|$$(INST_DIR)|$${DESTDIR}$${INST_DIR}|g ; \ s|> $$(INST_DIR)|> $${DESTDIR}$${INST_DIR}|' ${WRKSRC}/include/Make/Install.make @${REINPLACE_CMD} \ 's|= python|= ${PYTHON_CMD:T}|' ${WRKSRC}/include/Make/Platform.make.in @${REINPLACE_CMD} \ "s|'make'|'gmake'|g" ${WRKSRC}/scripts/g.extension/g.extension.py @${REINPLACE_CMD} \ 's|$$(ARCH)|$$(TARGET)|g' ${WRKSRC}/include/Make/Grass.make # Replace hardcoded python interpreter to PYTHON_CMD @${REINPLACE_CMD} -e 's|env python|env ${PYTHON_CMD}|g' \ ${WRKSRC}/lib/gis/parser_script.c \ ${WRKSRC}/general/g.parser/g.parser.html \ ${WRKSRC}/lib/python/docs/src/script_intro.rst \ ${WRKSRC}/lib/init/grass7.html \ ${WRKSRC}/raster/r.solute.transport/r.solute.transport.html @${REINPLACE_CMD} "s|'GRASS_PYTHON', 'python'|'GRASS_PYTHON', \'${PYTHON_CMD}\'|g" \ ${WRKSRC}/scripts/wxpyimgview/wxpyimgview.py @${REINPLACE_CMD} 's|GRASS_PYTHON=python|GRASS_PYTHON=${PYTHON_CMD}|g' \ ${WRKSRC}/lib/init/grass.sh @${REINPLACE_CMD} \ "s|environ\['GRASS_PYTHON'\] = "'"python"'"|environ['GRASS_PYTHON'] = "'"${PYTHON_CMD}"'"|g" \ ${WRKSRC}/lib/python/script/setup.py @${FIND} ${WRKSRC} -type f -name "*.py" | ${XARGS} ${REINPLACE_CMD} \ 's|env python|env ${PYTHON_CMD}|g' post-install: @${RM} -rf ${STAGEDIR}${PREFIX}/${GRASS_INST_DIR}/demolocation/PERMANENT/.tmp/ @${STRIP_CMD} ${STAGEDIR}${PREFIX}/${GRASS_INST_DIR}/bin/* @${STRIP_CMD} ${STAGEDIR}${PREFIX}/${GRASS_INST_DIR}/driver/db/* .for i in clean_temp current_time_s_ms echo i.find lock run r.watershed/seg r.watershed/ram @${STRIP_CMD} ${STAGEDIR}${PREFIX}/${GRASS_INST_DIR}/etc/${i} .endfor @${STRIP_CMD} ${STAGEDIR}${PREFIX}/${GRASS_INST_DIR}/etc/lister/* @${STRIP_CMD} ${STAGEDIR}${PREFIX}/${GRASS_INST_DIR}/lib/libgrass_*.so @${STRIP_CMD} ${STAGEDIR}${PREFIX}/${GRASS_INST_DIR}/tools/g.echo .include Index: head/graphics/gdal/Makefile =================================================================== --- head/graphics/gdal/Makefile (revision 452601) +++ head/graphics/gdal/Makefile (revision 452602) @@ -1,138 +1,139 @@ # Created by: Randall Hopper # $FreeBSD$ PORTNAME= gdal PORTVERSION= 2.2.2 +PORTREVISION= 1 CATEGORIES= graphics geography MASTER_SITES= http://download.osgeo.org/gdal/${PORTVERSION}/ \ ftp://ftp.remotesensing.org/pub/gdal/${PORTVERSION}/ \ LOCAL/sunpoet MAINTAINER= sunpoet@FreeBSD.org COMMENT= Translator library for raster geospatial data formats LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE.TXT LIB_DEPENDS= libgeotiff.so:graphics/libgeotiff \ libgif.so:graphics/giflib \ libjson-c.so:devel/json-c \ libpng.so:graphics/png \ libproj.so:graphics/proj \ libtiff.so:graphics/tiff OPTIONS_DEFINE= ARMADILLO CFITSIO CURL ECW EXPAT FREEXL GEOS GTA HDF5 JASPER \ KML LIBXML2 MYSQL NETCDF ODBC OPENJPEG PCRE PGSQL SFCGAL \ SPATIALITE SQLITE WEBP XERCES OPTIONS_DEFAULT=JASPER OPTIONS_RADIO= PDF OPTIONS_RADIO_PDF= PODOFO POPPLER OPTIONS_SUB= yes PCRE_DESC= Regular expression support for SQLite CFLAGS+= -fPIC CONFIGURE_ARGS= --datadir=${DATADIR} \ --enable-static=yes \ --with-geotiff=yes \ --with-gif=yes \ --with-gnm=yes \ --with-jpeg=yes \ --with-libjson-c=yes \ --with-liblzma=yes \ --with-libtiff=yes \ --with-libz=/usr \ --with-png=yes \ --with-static-proj4=no \ --with-threads=yes \ --without-libtool \ ${ICONV_CONFIGURE_ARG} GNU_CONFIGURE= yes LDFLAGS+= ${ICONV_LIB} MAKE_JOBS_UNSAFE= yes MAKEFILE= GNUmakefile USE_LDCONFIG= yes USES= gmake iconv jpeg localbase tar:xz PLIST_SUB= MAJOR_VER=${PORTVERSION:R:R} PORTVERSION=${PORTVERSION} SLAVEDIRS= graphics/p5-Geo-GDAL graphics/php-gdal graphics/py-gdal ARMADILLO_CONFIGURE_WITH= armadillo ARMADILLO_LIB_DEPENDS= libarmadillo.so:math/armadillo CFITSIO_CONFIGURE_WITH= cfitsio CFITSIO_LIB_DEPENDS= libcfitsio.so:astro/cfitsio CURL_CONFIGURE_OFF= --with-curl=no CURL_CONFIGURE_ON= --with-curl=${LOCALBASE}/bin/curl-config CURL_LIB_DEPENDS= libcurl.so:ftp/curl ECW_CONFIGURE_WITH= ecw ECW_LIB_DEPENDS= libNCSEcw.so:graphics/libecwj2 EXPAT_CONFIGURE_WITH= expat EXPAT_LIB_DEPENDS= libexpat.so:textproc/expat2 FREEXL_CONFIGURE_WITH= freexl FREEXL_LIB_DEPENDS= libfreexl.so:textproc/freexl GEOS_CONFIGURE_OFF= --with-geos=no GEOS_CONFIGURE_ON= --with-geos=${LOCALBASE}/bin/geos-config GEOS_LIB_DEPENDS= libgeos.so:graphics/geos GTA_CONFIGURE_WITH= gta GTA_LIB_DEPENDS= libgta.so:devel/libgta HDF5_CONFIGURE_WITH= hdf5 HDF5_LIB_DEPENDS= libhdf5.so:science/hdf5 JASPER_CONFIGURE_WITH= jasper JASPER_LIB_DEPENDS= libjasper.so:graphics/jasper KML_CONFIGURE_WITH= libkml KML_LIB_DEPENDS= libkmlbase.so:science/libkml LIBXML2_CONFIGURE_OFF= --with-xml2=no LIBXML2_CONFIGURE_ON= --with-xml2=${LOCALBASE}/bin/xml2-config LIBXML2_LIB_DEPENDS= libxml2.so:textproc/libxml2 MYSQL_CONFIGURE_OFF= --with-mysql=no MYSQL_CONFIGURE_ON= --with-mysql=${LOCALBASE}/bin/mysql_config MYSQL_USES= mysql NETCDF_CONFIGURE_WITH= netcdf NETCDF_LIB_DEPENDS= libnetcdf.so:science/netcdf ODBC_CONFIGURE_WITH= odbc ODBC_LIB_DEPENDS= libodbc.so:databases/unixODBC OPENJPEG_CONFIGURE_WITH=openjpeg OPENJPEG_LIB_DEPENDS= libopenjp2.so:graphics/openjpeg PCRE_CONFIGURE_WITH= pcre PCRE_LIB_DEPENDS= libpcre.so:devel/pcre PGSQL_CONFIGURE_OFF= --with-pg=no PGSQL_CONFIGURE_ON= --with-pg=${LOCALBASE}/bin/pg_config PGSQL_USES= pgsql PODOFO_CONFIGURE_WITH= podofo PODOFO_LIB_DEPENDS= libpodofo.so:graphics/podofo POPPLER_CONFIGURE_WITH= poppler=${LOCALBASE} POPPLER_LIB_DEPENDS= libpoppler.so:graphics/poppler SFCGAL_CONFIGURE_OFF= --with-sfcgal=no SFCGAL_CONFIGURE_ON= --with-sfcgal=${LOCALBASE}/bin/sfcgal-config SFCGAL_LIB_DEPENDS= libSFCGAL.so:databases/sfcgal SPATIALITE_CONFIGURE_WITH= spatialite SPATIALITE_LIB_DEPENDS= libspatialite.so:databases/spatialite SQLITE_CONFIGURE_WITH= sqlite3 SQLITE_USES= sqlite WEBP_CONFIGURE_WITH= webp WEBP_LIB_DEPENDS= libwebp.so:graphics/webp XERCES_CONFIGURE_WITH= xerces XERCES_LIB_DEPENDS= libxerces-c.so:textproc/xerces-c3 post-patch: @${REINPLACE_CMD} -e '/^#GDAL_SLIB_SONAME/ s|^#||' ${WRKSRC}/GDALmake.opt.in @${REINPLACE_CMD} -e 's|$$(INST_LIB)/pkgconfig|${PREFIX}/libdata/pkgconfig|' ${WRKSRC}/GNUmakefile @${REINPLACE_CMD} -e 's|-lminizip|-lkmlminizip|' ${WRKSRC}/configure # Clean up bundled libraries @${RM} -r ${WRKSRC}/frmts/gif/giflib/ @${RM} -r ${WRKSRC}/frmts/gtiff/libgeotiff/ @${RM} -r ${WRKSRC}/frmts/gtiff/libtiff/ @${RM} -r ${WRKSRC}/frmts/jpeg/libjpeg/ @${RM} -r ${WRKSRC}/frmts/jpeg/libjpeg12/ @${RM} -r ${WRKSRC}/frmts/png/libpng/ @${RM} -r ${WRKSRC}/frmts/zlib/ @${RM} -r ${WRKSRC}/ogr/ogrsf_frmts/geojson/libjson/ post-install: cd ${WRKSRC}/gnm/ && ${INSTALL_DATA} gnm.h gnm_api.h gnm_priv.h gnmgraph.h ${STAGEDIR}${PREFIX}/include/ ${INSTALL_DATA} ${WRKSRC}/libgdal.a ${STAGEDIR}${PREFIX}/lib/ ${TOUCH} ${STAGEDIR}${PREFIX}/lib/gdalplugins/.keepme ${INSTALL_DATA} ${WRKSRC}/GDALmake.opt ${STAGEDIR}${DATADIR}/ ${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/libgdal.so.${PORTVERSION} .include Index: head/graphics/gmt/Makefile =================================================================== --- head/graphics/gmt/Makefile (revision 452601) +++ head/graphics/gmt/Makefile (revision 452602) @@ -1,108 +1,109 @@ # Created by: sec@42.org # $FreeBSD$ PORTNAME= gmt PORTVERSION= 4.5.16 DISTVERSIONSUFFIX= -src +PORTREVISION= 1 CATEGORIES= graphics MASTER_SITES= ftp://ftp.soest.hawaii.edu/%SUBDIR%/ \ ftp://ftp.geologi.uio.no/pub/%SUBDIR%/ \ ftp://ftp.iag.usp.br/%SUBDIR%/ \ ftp://ftp.scc.u-tokai.ac.jp/pub/%SUBDIR%/ \ http://gd.tuwien.ac.at/graphics/visual/%SUBDIR%/ \ http://gmt.mirror.ac.za/%SUBDIR%/ \ ftp://ftp.soest.hawaii.edu/gshhg/:gshhg \ ftp://ftp.scc.u-tokai.ac.jp/pub/gmt/:gshhg MASTER_SITE_SUBDIR= ${PORTNAME} ${PORTNAME}/legacy DISTFILES= ${DISTNAME}${EXTRACT_SUFX} \ ${GSHHG_DISTNAME}.tar.gz:gshhg MAINTAINER= ports@FreeBSD.org COMMENT= Generic Mapping Tools - data processing and display software package LICENSE= GPLv2 LGPL3 LICENSE_COMB= multi LICENSE_DISTFILES_GPLv2= ${DISTNAME}${EXTRACT_SUFX} LICENSE_DISTFILES_LGPL3= ${GSHHG_DISTNAME}${EXTRACT_SUFX} LIB_DEPENDS= libnetcdf.so:science/netcdf RUN_DEPENDS= bash:shells/bash WRKSRC= ${WRKDIR}/${PORTNAME}-${PORTVERSION} USES= autoreconf:build gmake pkgconfig shebangfix tar:bzip2 SHEBANG_FILES= gmtswitch doc/examples/*/*.sh src/GMT.in \ src/gmt_shell_functions.sh.in src/gmtget.in \ src/gmtlogo.in src/isogmt.in GNU_CONFIGURE= yes CONFIGURE_ARGS= --datadir=${DATADIR} \ --with-gshhg-dir=${DATADIR}/coast INSTALL_TARGET= install-gmt install-data install-man install-doc MAKE_JOBS_UNSAFE= yes PORTDOCS= * PORTSCOUT= limitw:0,even OPTIONS_DEFINE= DEBUG DOCS EPS GDAL IMPERIAL OCTAVE SHARED X11 OPTIONS_DEFAULT= GDAL SHARED X11 OPTIONS_SUB= yes DEBUG_CONFIGURE_ON= --enable-debug --enable-devdebug EPS_DESC= Set .eps as default output format, otherwise .ps EPS_CONFIGURE_ON= --enable-eps GDAL_DESC= Compile in experimental GDAL support GDAL_LIB_DEPENDS= libgdal.so:graphics/gdal GDAL_CONFIGURE_ON= --enable-gdal IMPERIAL_DESC= Choose Imperial (inch) units over metric (cm) IMPERIAL_CONFIGURE_ON= --enable-US OCTAVE_DESC= Build GMT-octave interface OCTAVE_RUN_DEPENDS= octave:math/octave OCTAVE_CONFIGURE_ON= --enable-octave --enable-mex OCTAVE_CONFIGURE_OFF= --disable-mex SHARED_DESC= Build shared (dynamic) libraries SHARED_CONFIGURE_ON= --enable-shared SHARED_USE= LDCONFIG=yes X11_USE= XORG=x11,xaw,xmu,xt X11_CONFIGURE_OFF= --disable-xgrid STRIP_BINS= blockmean blockmedian blockmode filter1d fitcircle \ gmt2rgb gmtconvert gmtdefaults gmtmath gmtselect \ gmtset grd2cpt grd2xyz grdblend grdclip \ grdcontour grdcut grdedit grdfft grdfilter \ grdgradient grdhisteq grdimage grdinfo grdlandmask \ grdmask grdmath grdpaste grdproject grdreformat \ grdsample grdtrack grdtrend grdvector grdview \ grdvolume greenspline makecpt mapproject minmax \ nearneighbor project ps2raster psbasemap psclip \ pscoast pscontour pshistogram psimage pslegend \ psmask psrose psscale pstext pswiggle \ psxy psxyz sample1d spectrum1d splitxyz \ surface trend1d trend2d triangulate xyz2grd STRIP_LIBS= libgmt.so.4 libgmtps.so.4 libpsl.so.4 # http://www.soest.hawaii.edu/pwessel/gshhg/ GSHHG_DISTNAME= gshhg-gmt-2.3.7 pre-configure: @(cd ${CONFIGURE_WRKSRC} && ${SETENV} AUTOHEADER="${TRUE}" \ ${AUTORECONF} -f -i) post-install: @${MKDIR} ${STAGEDIR}${DATADIR}/coast (cd ${WRKDIR}/${GSHHG_DISTNAME} && ${INSTALL_DATA} README.TXT *.nc \ ${STAGEDIR}${DATADIR}/coast) .for i in ${STRIP_BINS} @${STRIP_CMD} ${STAGEDIR}${PREFIX}/bin/${i} .endfor post-install-X11-on: (cd ${WRKSRC}/src/xgrid && ${INSTALL_PROGRAM} xgridedit \ ${STAGEDIR}${PREFIX}/bin) post-install-SHARED-on: .for i in ${STRIP_LIBS} @${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/${i} .endfor .include Index: head/graphics/grads/Makefile =================================================================== --- head/graphics/grads/Makefile (revision 452601) +++ head/graphics/grads/Makefile (revision 452602) @@ -1,83 +1,83 @@ # Created by: Greg Lewis # $FreeBSD$ PORTNAME= grads PORTVERSION= 1.9b4 -PORTREVISION= 11 +PORTREVISION= 12 CATEGORIES= graphics science math MASTER_SITES= ftp://grads.iges.org/grads/1.9/:src \ ftp://cola.gmu.edu/grads/1.9/:src \ ftp://grads.iges.org/grads/:other \ ftp://cola.gmu.edu/grads/:other DISTFILES= ${PORTNAME}-src-${PORTVERSION}${EXTRACT_SUFX}:src \ example.tar.gz:other EXTRACT_ONLY= ${PORTNAME}-src-${PORTVERSION}${EXTRACT_SUFX} MAINTAINER= glewis@FreeBSD.org COMMENT= The Grid Analysis and Display System BUILD_DEPENDS= ${LOCALBASE}/lib/libudunits2.a:science/udunits \ ${LOCALBASE}/lib/libsx.a:x11/libsx LIB_DEPENDS= libgd.so:graphics/gd \ libpng.so:graphics/png USES= jpeg ncurses GNU_CONFIGURE= yes CONFIGURE_ENV+= SUPPLIBS="${LOCALBASE}" CONFIGURE_ARGS+= --enable-dyn-supplibs \ --with-readline \ --with-printim \ --with-gui \ --with-x OPTIONS_DEFINE= HDF NETCDF DOCS EXAMPLES OPTIONS_DEFAULT= NETCDF HDF_DESC= Build hdf-support (only hdf OR netcdf is supported) NETCDF_DESC= Build netcdf-support PORTDATA= * .include .if ${PORT_OPTIONS:MDOCS} PORTDOCS= * .endif .if ${PORT_OPTIONS:MEXAMPLES} PORTEXAMPLES= * .endif .if ${PORT_OPTIONS:MHDF} BROKEN= Fails to package LIB_DEPENDS+= libmfhdf.so:science/hdf CONFIGURE_ARGS+= --with-hdf PLIST_SUB+= NETCDF="@comment " HDF="" .endif .if ${PORT_OPTIONS:MNETCDF} LIB_DEPENDS+= libnetcdf.so:science/netcdf CONFIGURE_ARGS+= --with-nc PLIST_SUB+= NETCDF="" HDF="@comment " .endif post-extract: ${MKDIR} "${WRKSRC}/examples" cd "${WRKSRC}/examples" && ${TAR} -xzf "${DISTDIR}/example.tar.gz" post-configure: ${REINPLACE_CMD} -e "s:%%DATADIR%%:${DATADIR}:" ${WRKSRC}/src/gx.h ${REINPLACE_CMD} -e "s:ludunits:ludunits2:" ${WRKSRC}/src/Makefile post-install: ${MKDIR} "${STAGEDIR}${DATADIR}" cd ${WRKSRC}/data && ${COPYTREE_SHARE} . "${STAGEDIR}${DATADIR}" .if ${PORT_OPTIONS:MEXAMPLES} ${MKDIR} "${STAGEDIR}${EXAMPLESDIR}" cd ${WRKSRC}/examples && ${COPYTREE_SHARE} . "${STAGEDIR}${EXAMPLESDIR}" .endif .if ${PORT_OPTIONS:MDOCS} ${MKDIR} "${STAGEDIR}${DOCSDIR}" cd ${WRKSRC}/doc && ${COPYTREE_SHARE} . "${STAGEDIR}${DOCSDIR}" .endif .include Index: head/graphics/opendx/Makefile =================================================================== --- head/graphics/opendx/Makefile (revision 452601) +++ head/graphics/opendx/Makefile (revision 452602) @@ -1,101 +1,101 @@ # Created by: Thomas Gellekum # $FreeBSD$ PORTNAME= opendx PORTVERSION= 4.4.4 -PORTREVISION= 24 +PORTREVISION= 25 CATEGORIES= graphics math java MASTER_SITES= http://www.sfr-fresh.com/unix/misc/ DISTNAME= dx-${PORTVERSION} MAINTAINER= stephen@FreeBSD.org COMMENT= IBM's Open Visualization Data Explorer LICENSE= IBM-OVDX-v1 LICENSE_NAME= IBM PUBLIC LICENSE - Open Visualization Data Explorer VERSION 1.0 LICENSE_FILE= ${WRKSRC}/LICENSE LICENSE_PERMS= dist-mirror dist-sell pkg-mirror pkg-sell auto-accept LIB_DEPENDS= libMagickWand-6.so:graphics/ImageMagick \ libtiff.so:graphics/tiff \ libcdf.so:science/cdf \ libXp.so:x11/libXp USE_XORG= x11 xt xinerama xext xpm xmu sm ice USES= bison motif gmake libtool USE_GL= gl glu GNU_CONFIGURE= yes CONFIGURE_ARGS= --enable-shared USE_LDCONFIG= yes CONFIGURE_ENV= ARCH=freebsd CPPFLAGS+= ${CXXFLAGS} -I${LOCALBASE}/include LDFLAGS+= -L${LOCALBASE}/lib NO_MTREE= yes PLIST_SUB= ARCH=freebsd PKGMESSAGE= ${WRKDIR}/pkg-message .if defined(WITH_HDF) && !defined(WITHOUT_NETCDF) IGNORE= HDF and NETCDF are conflicting .endif .if defined(WITH_HDF) LIB_DEPENDS+= libmfhdf.so:science/hdf .else CONFIGURE_ARGS+= --without-hdf .endif .if !defined(WITHOUT_NETCDF) LIB_DEPENDS+= libnetcdf.so:science/netcdf .else CONFIGURE_ARGS+= --without-netcdf .endif .if defined(WITH_JAVA) ONLY_FOR_ARCHS= i386 USE_JAVA= yes JAVA_VERSION= 1.6+ BUILD_DEPENDS+= ${JAVALIBDIR}/npcosmop211.jar:graphics/cosmoplayer RUN_DEPENDS+= ${JAVALIBDIR}/npcosmop211.jar:graphics/cosmoplayer CONFIGURE_ARGS+= --with-cosmojar-path=${JAVALIBDIR}/npcosmop211.jar \ --with-java40jar-path=${JAVALIBDIR}/java40.jar \ --with-jni-path=${JAVA_HOME}/include:${JAVA_HOME}/include/freebsd PLIST_SUB+= JAVA="" DIR2PRUNE= dx/java/user dx/java/server/nets .else CONFIGURE_ARGS+= --without-javadx PLIST_SUB+= JAVA="@comment " .endif PLIST_SUB+= UNAMEP=${ARCH} .include post-patch: @${RM} ${WRKSRC}/include/stamp-h.in .for dir in doc help html man @${FIND} ${WRKSRC}/${dir} -type f | ${XARGS} \ ${REINPLACE_CMD} -e "s;/usr/lpp;${PREFIX};g" .endfor @${REINPLACE_CMD} -e "s;/usr/X11R6;${LOCALBASE};g" \ ${WRKSRC}/configure @${REINPLACE_CMD} -e "s|startserver.bat||" \ ${WRKSRC}/src/uipp/java/server/Makefile.in @${REINPLACE_CMD} -e 's|$$(ARCH)|@ARCH@|' \ ${WRKSRC}/src/misc/Makefile.* post-install: @${CP} ${FILESDIR}/pkg-message.in ${PKGMESSAGE} .if defined(WITH_JAVA) ${CHMOD} 0775 ${STAGEDIR}${PREFIX}/dx/java/server/nets ${TOUCH} ${DIR2PRUNE:S|^|${STAGEDIR}${PREFIX}/|:S|$|/.keepme|} @${ECHO} "---------------------------------------------------------" \ >> ${PKGMESSAGE} @${ECHO} "Before starting ${PREFIX}/dx/java/server/bin/startserver" \ >> ${PKGMESSAGE} @${ECHO} "you must install the port graphics/opendx-samples." \ >> ${PKGMESSAGE} .endif @${ECHO} "---------------------------------------------------------" \ >> ${PKGMESSAGE} .include Index: head/math/grace/Makefile =================================================================== --- head/math/grace/Makefile (revision 452601) +++ head/math/grace/Makefile (revision 452602) @@ -1,80 +1,80 @@ # Created by: Lars Köller # $FreeBSD$ PORTNAME= grace PORTVERSION= 5.1.25 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= math print MASTER_SITES= ftp://ftp.fu-berlin.de/unix/graphics/grace/src/stable/ \ ftp://ftp.ntua.gr/pub/graphics/grace/src/stable/ \ ftp://ftp.u-aizu.ac.jp/pub/SciEng/math/grace/src/stable/ \ ftp://plasma-gate.weizmann.ac.il/pub/grace/src/stable/ MAINTAINER= ports@FreeBSD.org COMMENT= Powerful 2D plotting tool (successor of xmgr) LICENSE= GPLv2 LIB_DEPENDS= libt1.so:devel/t1lib \ libpng.so:graphics/png \ libXbae.so:x11-toolkits/xbae RUN_DEPENDS= xdg-open:devel/xdg-utils USES= gmake jpeg motif GNU_CONFIGURE= yes CONFIGURE_ARGS= --enable-grace-home=${DATADIR} \ --with-extra-incpath=${LOCALBASE}/include \ --with-extra-ldpath=${LOCALBASE}/lib \ --with-helpviewer="xdg-open %s" \ --without-bundled-xbae MAKE_ARGS= LINUXDOC="${TRUE}" PDFLATEX="${TRUE}" DESKTOP_ENTRIES="XMgrace" "2D Plotting tool for scientific data" \ "${PREFIX}/share/pixmaps/mini-xmgr3.xpm" "xmgrace" \ "" "" OPTIONS_DEFINE= DOCS EXAMPLES FFTW NETCDF PDF XMHTML OPTIONS_DEFAULT= FFTW NETCDF PDF XMHTML FFTW_CONFIGURE_WITH= fftw FFTW_LIB_DEPENDS= libfftw.so:math/fftw NETCDF_CONFIGURE_ENABLE= netcdf NETCDF_LIB_DEPENDS= libnetcdf.so:science/netcdf PDF_DESC= PDF output PDF_CONFIGURE_ENABLE= pdfdrv PDF_LIB_DEPENDS= libpdf.so:print/pdflib XMHTML_DESC= XmHTML based on-line help XMHTML_CONFIGURE_ENABLE= xmhtml XMHTML_LIB_DEPENDS= libXmHTML.so:x11-toolkits/xmhtml post-configure: ${REINPLACE_CMD} -e \ '/SCRIPTS/s|INSTALL_PROGRAM|INSTALL_SCRIPT|' \ ${WRKSRC}/auxiliary/Makefile ${REINPLACE_CMD} -e \ '/cd /!s|$$(GRACE_HOME)/doc|${DOCSDIR}| ; \ /cd /s|$$(GRACE_HOME)/doc|$$(DESTDIR)$$(PREFIX)/man/man1| ; \ /^install/s|$$(MANPAGES)||' \ ${WRKSRC}/doc/Makefile ${REINPLACE_CMD} -e \ 's|$$(GRACE_HOME)/examples|${EXAMPLESDIR}| ; \ /DOTEST/s|INSTALL_PROGRAM|INSTALL_SCRIPT|' \ ${WRKSRC}/examples/Makefile ${REINPLACE_CMD} -e \ 's|$$(GRACE_HOME)/include|$$(PREFIX)/include| ; \ s|$$(GRACE_HOME)/lib|$$(PREFIX)/lib|' \ ${WRKSRC}/grace_np/Makefile ${FIND} ${WRKSRC} -name Makefile | ${XARGS} ${REINPLACE_CMD} -e \ 's|$$(GRACE_HOME)/bin|$$(PREFIX)/bin|' post-install: (cd ${WRKSRC}/doc && ${INSTALL_MAN} [c-g]*.1 \ ${STAGEDIR}${MANPREFIX}/man/man1) (cd ${FILESDIR} && ${INSTALL_MAN} mini-xmgr3.xpm \ ${STAGEDIR}${PREFIX}/share/pixmaps) ${LN} -sf xmgrace ${STAGEDIR}${PREFIX}/bin/grace ${LN} -sf grace.1 ${STAGEDIR}${MANPREFIX}/man/man1/xmgrace.1 ${LN} -sf ${DOCSDIR} ${STAGEDIR}${DATADIR}/doc ${LN} -sf ${EXAMPLESDIR} ${STAGEDIR}${DATADIR}/examples .include Index: head/math/gri/Makefile =================================================================== --- head/math/gri/Makefile (revision 452601) +++ head/math/gri/Makefile (revision 452602) @@ -1,80 +1,80 @@ # Created by: M. L. Dodson, # $FreeBSD$ PORTNAME= gri PORTVERSION= 2.12.23 -PORTREVISION= 5 +PORTREVISION= 6 CATEGORIES= math MASTER_SITES= SF MAINTAINER= ports@FreeBSD.org COMMENT= Extensible plotting language for producing scientific graphs LIB_DEPENDS= libnetcdf.so:science/netcdf USES= gmake readline shebangfix makeinfo SHEBANG_FILES= doc/examples/FEM.pl src/gri_merge src/gri_unpage GNU_CONFIGURE= yes CONFIGURE_ARGS= --enable-FreeBSD CPPFLAGS+= -I${LOCALBASE}/include LDFLAGS+= -L${LOCALBASE}/lib INFO= gri USE_TEX= formats:build dvipsk:build PORTDOCS= * PORTEXAMPLES= * PLIST_FILES= bin/gri bin/gri_merge bin/gri_unpage \ man/man1/gri.1.gz man/man1/gri_merge.1.gz \ man/man1/gri_unpage.1.gz \ share/emacs/site-lisp/gri-mode.el \ %%DATADIR%%/gri.cmd \ %%DATADIR%%/logo.dat \ %%DATADIR%%/rgb.txt \ %%DATADIR%%/startup.msg OPTIONS_DEFINE= DOCS EXAMPLES .include .if ${PORT_OPTIONS:MDOCS} || ${PORT_OPTIONS:MEXAMPLES} BUILD_DEPENDS+= convert:graphics/ImageMagick .endif post-patch: @${REINPLACE_CMD} -e \ '/^SUBDIRS/s|doc||' ${WRKSRC}/Makefile.in @${REINPLACE_CMD} -e \ '/gzip/s|^|#| ; \ /EXAMPLES_DIR/s|^|#|' ${WRKSRC}/doc/Makefile.in post-build: .if ${PORT_OPTIONS:MDOCS} || ${PORT_OPTIONS:MEXAMPLES} (cd ${WRKSRC}/doc && ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_FLAGS} \ ${MAKEFILE} ${MAKE_ARGS} ${ALL_TARGET}) .else (cd ${WRKSRC}/doc && makeinfo gri.texi) .endif post-install: .if ${PORT_OPTIONS:MDOCS} (cd ${WRKSRC}/doc && ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_FLAGS} \ ${MAKEFILE} ${MAKE_ARGS} ${INSTALL_TARGET}) .else ${INSTALL_MAN} ${WRKSRC}/doc/gri-manpage.1 \ ${STAGEDIR}${MANPREFIX}/man/man1/gri.1 ${INSTALL_MAN} ${WRKSRC}/doc/gri_merge.1-skel \ ${STAGEDIR}${MANPREFIX}/man/man1/gri_merge.1 ${INSTALL_MAN} ${WRKSRC}/doc/gri_unpage.1-skel \ ${STAGEDIR}${MANPREFIX}/man/man1/gri_unpage.1 ${INSTALL_DATA} ${WRKSRC}/doc/gri.info* ${STAGEDIR}${PREFIX}/${INFO_PATH} .endif .if ${PORT_OPTIONS:MEXAMPLES} @${MKDIR} ${STAGEDIR}${EXAMPLESDIR} (cd ${WRKSRC}/doc/examples && ${INSTALL_DATA} model* *.dat *.gri e*.ps \ ${STAGEDIR}${EXAMPLESDIR}) (cd ${WRKSRC}/doc/examples \ && ${INSTALL_SCRIPT} FEM.pl ${STAGEDIR}${EXAMPLESDIR}) .endif .include Index: head/math/labplot/Makefile =================================================================== --- head/math/labplot/Makefile (revision 452601) +++ head/math/labplot/Makefile (revision 452602) @@ -1,45 +1,45 @@ # Created by: Kay Lehmann # $FreeBSD$ PORTNAME= labplot PORTVERSION= 2.4.0 -PORTREVISION= 3 +PORTREVISION= 4 DISTVERSIONSUFFIX=-kf5 CATEGORIES= math kde MASTER_SITES= KDE/stable/${PORTNAME}/${PORTVERSION} MAINTAINER= kde@FreeBSD.org COMMENT= Data plotting and function analysis tool for KDE LICENSE= GPLv2+ LICENSE_FILE= ${WRKSRC}/COPYING LIB_DEPENDS= libgsl.so:math/gsl OPTIONS_DEFINE= FITS FFTW3 HDF5 NETCDF OPTIONS_DEFAULT= ${OPTIONS_DEFINE} FITS_DESC= Flexible Image Transport System Data Format (FITS) Library FITS_CMAKE_BOOL= ENABLE_FITS FITS_LIB_DEPENDS= libcfitsio.so:astro/cfitsio FFTW3_DESC= Build with FFTW support FFTW3_CMAKE_BOOL= ENABLE_FFTW FFTW3_LIB_DEPENDS= libfftw3.so:math/fftw3 HDF5_DESC= Build with HDF5 support HDF5_CMAKE_BOOL= ENABLE_HDF5 HDF5_LIB_DEPENDS= libhdf5.so:science/hdf5 NETCDF_DESC= Build with NetCDF support NETCDF_CMAKE_BOOL= ENABLE_NETCDF NETCDF_LIB_DEPENDS= libnetcdf.so:science/netcdf USES= cmake:outsource desktop-file-utils kde:5 shared-mime-info tar:xz USE_KDE= archive auth bookmarks codecs completion config configwidgets \ coreaddons crash ecm guiaddons i18n iconthemes itemviews \ jobwidgets kdelibs4support kio newstuff notifications parts \ service solid sonnet textwidgets unitconversion widgetsaddons \ windowsystem xmlgui USE_QT5= core dbus gui network printsupport svg widgets xml \ buildtools_build qmake_build DATADIR= ${PREFIX}/share/labplot2 .include Index: head/math/octave-forge-netcdf/Makefile =================================================================== --- head/math/octave-forge-netcdf/Makefile (revision 452601) +++ head/math/octave-forge-netcdf/Makefile (revision 452602) @@ -1,29 +1,29 @@ # Created by: Stephen Montgomery-Smith # $FreeBSD$ PORTNAME= octave-forge-netcdf PORTVERSION= 1.0.11 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= math MAINTAINER= stephen@FreeBSD.org COMMENT= Octave-forge package ${OCTAVE_PKGNAME} LICENSE= GPLv2 LICENSE_FILE= ${WRKDIR}/${OCTSRC}/COPYING # OCTSRC is the name of the directory of the package. # It is usually ${OCTAVE_PKGNAME} or ${DISTNAME}. OCTSRC= ${OCTAVE_PKGNAME} WRKSRC= ${WRKDIR}/${OCTSRC}/src LIB_DEPENDS+= libnetcdf.so:science/netcdf .include "${.CURDIR}/../../Mk/bsd.octave.mk" post-build: ${RM} ${WRKSRC}/Makefile ${WRKSRC}/configure cd ${WRKDIR} && ${TAR} cfz ${DISTNAME}.tar.gz ${OCTSRC} .include Index: head/math/octave-forge-octcdf/Makefile =================================================================== --- head/math/octave-forge-octcdf/Makefile (revision 452601) +++ head/math/octave-forge-octcdf/Makefile (revision 452602) @@ -1,29 +1,29 @@ # Created by: Stephen Montgomery-Smith # $FreeBSD$ PORTNAME= octave-forge-octcdf PORTVERSION= 1.1.8 -PORTREVISION= 4 +PORTREVISION= 5 CATEGORIES= math MAINTAINER= stephen@FreeBSD.org COMMENT= Octave-forge package ${OCTAVE_PKGNAME} LICENSE= GPLv2 LICENSE_FILE= ${WRKDIR}/${OCTSRC}/COPYING # OCTSRC is the name of the directory of the package. # It is usually ${OCTAVE_PKGNAME} or ${DISTNAME}. OCTSRC= ${OCTAVE_PKGNAME} WRKSRC= ${WRKDIR}/${OCTSRC}/src LIB_DEPENDS+= libnetcdf.so:science/netcdf .include "${.CURDIR}/../../Mk/bsd.octave.mk" post-build: ${RM} ${WRKSRC}/Makefile ${WRKSRC}/configure cd ${WRKDIR} && ${TAR} cfz ${DISTNAME}.tar.gz ${OCTSRC} .include Index: head/math/p5-NetCDF/Makefile =================================================================== --- head/math/p5-NetCDF/Makefile (revision 452601) +++ head/math/p5-NetCDF/Makefile (revision 452602) @@ -1,27 +1,27 @@ # Created by: Douglas K. Rand (rand@meridian-enviro.com) # $FreeBSD$ PORTNAME= NetCDF PORTVERSION= 1.2.4 -PORTREVISION= 4 +PORTREVISION= 5 CATEGORIES= math perl5 MASTER_SITES= ftp://ftp.unidata.ucar.edu/pub/netcdf-perl/ PKGNAMEPREFIX= p5- DISTNAME= netcdf-perl-${PORTVERSION} MAINTAINER= rand@meridian-enviro.com COMMENT= Perl5 module to read and write netCDF files LIB_DEPENDS= libnetcdf.so:science/netcdf USES= perl5 fakeroot WRKSRC_SUBDIR= src GNU_CONFIGURE= yes CONFIGURE_ENV= CPP_NETCDF=-I${LOCALBASE}/include LD_NETCDF=-lnetcdf \ PERL_MANDIR=${STAGEDIR}${SITE_PERL}/man PERL=${PERL} pre-install: @${PERL5} -pi -e 's/ doc_(perl|site|\$$\(INSTALLDIRS\))_install$$//' ${WRKSRC}/perl/Makefile .include Index: head/math/py-scientific/Makefile =================================================================== --- head/math/py-scientific/Makefile (revision 452601) +++ head/math/py-scientific/Makefile (revision 452602) @@ -1,36 +1,36 @@ # Created by: Thomas Gellekum # $FreeBSD$ PORTNAME= scientific PORTVERSION= 2.8 -PORTREVISION= 4 +PORTREVISION= 5 CATEGORIES= math python MASTER_SITES= http://sourcesup.cru.fr/frs/download.php/2309/ PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= ScientificPython-${PORTVERSION} MAINTAINER= fmysh@iijmio-mail.jp COMMENT= Collection of Python modules for scientific computing BUILD_DEPENDS= ${PYNUMPY} LIB_DEPENDS= libnetcdf.so:science/netcdf RUN_DEPENDS= ${PYNUMPY} USES= python USE_PYTHON= distutils autoplist DOCSDIR= ${PREFIX}/share/doc/${PKGNAMEPREFIX}${PORTNAME} EXAMPLESDIR= ${PREFIX}/share/examples/${PKGNAMEPREFIX}${PORTNAME} OPTIONS_DEFINE= DOCS EXAMPLES post-install: @${MKDIR} ${STAGEDIR}${DOCSDIR} ${INSTALL_DATA} ${WRKSRC}/LICENSE ${STAGEDIR}${DOCSDIR} cd ${WRKDIR}/${DISTNAME}/Doc; ${TAR} -c --exclude='*~' -f - . | \ (cd ${STAGEDIR}${DOCSDIR}; ${TAR} -xf -) @${MKDIR} ${STAGEDIR}${EXAMPLESDIR} cd ${WRKDIR}/${DISTNAME}/Examples; ${TAR} -c --exclude='*~' -f - . | \ (cd ${STAGEDIR}${EXAMPLESDIR}; ${TAR} -xf -) .include Index: head/science/cdo/Makefile =================================================================== --- head/science/cdo/Makefile (revision 452601) +++ head/science/cdo/Makefile (revision 452602) @@ -1,75 +1,75 @@ # Created by: Sunpoet Po-Chuan Hsieh # $FreeBSD$ PORTNAME= cdo PORTVERSION= 1.9.0 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= science MASTER_SITES= https://code.zmaw.de/attachments/download/15187/ \ LOCAL/sunpoet MAINTAINER= sunpoet@FreeBSD.org COMMENT= Climate Data Operators LICENSE= GPLv2 LICENSE_FILE= ${WRKSRC}/COPYING OPTIONS_DEFINE= CGRIBEX HDF5 JASPER NETCDF PROJ SZIP UDUNITS UUID OPTIONS_DEFAULT=CGRIBEX HDF5 JASPER NETCDF PROJ SZIP UDUNITS UUID OPTIONS_SUB= yes CGRIBEX_DESC= Use CGRIBEX library for GRIB1 files HDF5_IMPLIES= SZIP NETCDF_IMPLIES= HDF5 UUID_DESC= UUID support PORTSCOUT= site:https://code.zmaw.de/projects/cdo/files CONFIGURE_ARGS= --disable-data \ --disable-extra \ --disable-grib \ --disable-ieg \ --disable-openmp \ --disable-service \ --enable-cdi-lib \ --program-transform-name="" \ --with-zlib=/usr GNU_CONFIGURE= yes INSTALL_TARGET= install-strip MAKE_JOBS_UNSAFE= yes TEST_TARGET= check USE_CXXSTD= c++11 USE_LDCONFIG= yes USES= compiler:c++11-lib gmake libtool localbase pathfix CGRIBEX_CONFIGURE_WITH= cgribex CGRIBEX_LIB_DEPENDS= libcgribex.so:science/cgribex HDF5_CONFIGURE_WITH= hdf5 HDF5_LIB_DEPENDS= libhdf5.so:science/hdf5 JASPER_CONFIGURE_WITH= jasper JASPER_LIB_DEPENDS= libjasper.so:graphics/jasper NETCDF_CONFIGURE_WITH= netcdf NETCDF_LIB_DEPENDS= libnetcdf.so:science/netcdf PROJ_CONFIGURE_WITH= proj PROJ_LIB_DEPENDS= libproj.so:graphics/proj SZIP_CONFIGURE_WITH= szlib SZIP_LIB_DEPENDS= libsz.so:science/szip UDUNITS_CONFIGURE_WITH= udunits2 UDUNITS_LIB_DEPENDS= libudunits2.so:science/udunits UUID_CONFIGURE_OFF= ac_cv_func_uuid_create=no ac_cv_have_decl_uuid_create=no ac_cv_have_decl_uuid_generate=no ac_cv_lib_uuid_uuid_generate=no UUID_LIB_DEPENDS= libuuid.so:misc/e2fsprogs-libuuid .include .if ${ARCH} != "sparc64" CFLAGS+= -DPTHREAD_MUTEXATTR_CONDATTR .endif post-patch: @${REINPLACE_CMD} -e '/^SUBDIRS = / s| contrib||' ${WRKSRC}/Makefile.in @${REINPLACE_CMD} -e 's|$$(libdir)/\($$$$pkgconfigfile\)|${PREFIX}/libdata/\1|' ${WRKSRC}/libcdi/src/Makefile.in @${REINPLACE_CMD} -e 's|unsigned32 |uint32_t |' ${WRKSRC}/libcdi/src/cdilib.c ${WRKSRC}/libcdi/src/util.c test-NETCDF-on: @cd ${WRKSRC}/ && ${SETENV} CDO_PATH=src/cdo src/cdotest .include Index: head/science/gnudatalanguage/Makefile =================================================================== --- head/science/gnudatalanguage/Makefile (revision 452601) +++ head/science/gnudatalanguage/Makefile (revision 452602) @@ -1,143 +1,143 @@ # Created by: thierry@pompo.net # $FreeBSD$ PORTNAME= gnudatalanguage DISTVERSION= 0.9.7 -PORTREVISION= 8 +PORTREVISION= 9 CATEGORIES= science lang MASTER_SITES= SF/${PORTNAME}/gdl/${PORTVERSION} .if defined(BUILD_PYTHON_MODULE) PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} .endif DISTNAME= gdl-${DISTVERSION} MAINTAINER= thierry@FreeBSD.org COMMENT?= GDL, a free IDL compatible incremental compiler LICENSE= GPLv2 LIB_DEPENDS+= libplplot.so:math/plplot \ libpng.so:graphics/png \ libsz.so:science/szip \ libps.so:print/pslib \ libgsl.so:math/gsl USE_WX= 3.0+ USE_XORG= x11 sm ice xext USES= cmake:outsource compiler:gcc-c++11-lib dos2unix ncurses pkgconfig readline tar:tgz # On FreeBSD < 11 libc++ lacks support for sized delete operators. # GCC dropped the builtin version of these operators in 6+ by # defaulting to gnu++14. Force c++11 instead. # For a more detailed discussion see: # https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=219484 USE_CXXSTD= gnu++11 # Disable ncurses and readline from ports # Disable ImageMagick (does'nt work with plplot because dynamic drivers # are enabled by default) # TODO: add a slave port for mpich # TODO: create a port for Cmsvlib http://cow.physics.wisc.edu/~craigm/idl/down/cmsvlib.tar.gz # TODO: create a port for Astron http://idlastro.gsfc.nasa.gov/ftp/astron.tar.gz # TODO: create a port for TexToIdl http://physics.mnstate.edu/mcraig/textoidl/textoidl-2-1-2.tar CMAKE_ARGS= -DREADLINEDIR:STRING="/usr" \ -DNCURSESDIR:STRING="/usr" \ -DMPICH:BOOL=NO \ -DMAGICK:BOOL=NO CPPFLAGS+= ${CFLAGS} -fno-inline -DNPY_NO_DEPRECATED_API -DNPY_1_7_API_VERSION LDFLAGS+= -lpthread -L${LOCALBASE}/lib SLAVEDIRS= science/py-gnudatalanguage OPTIONS_DEFINE= EIGEN EXAMPLES FFTW GRAPHICSMAGICK GRIB HDF5 LIBPROJ4 MPICH2 NETCDF PYTHON QHULL UDUNITS OPTIONS_DEFAULT=EIGEN FFTW GRAPHICSMAGICK GRIB HDF5 LIBPROJ4 NETCDF PYTHON UDUNITS EIGEN_DESC= Eigen3 support (boost performance) EIGEN_BUILD_DEPENDS= ${LOCALBASE}/libdata/pkgconfig/eigen3.pc:math/eigen3 EIGEN_CMAKE_ON= -DEIGEN3:BOOL=YES EIGEN_CMAKE_OFF= -DEIGEN3:BOOL=NO FFTW_LIB_DEPENDS= libfftw3.so:math/fftw3 \ libfftw3f.so:math/fftw3-float FFTW_CMAKE_ON= -DFFTW:BOOL=YES FFTW_CMAKE_OFF= -DFFTW:BOOL=NO GRAPHICSMAGICK_DESC= Support GraphicsMagick GRAPHICSMAGICK_LIB_DEPENDS= libGraphicsMagick.so:graphics/GraphicsMagick GRAPHICSMAGICK_CMAKE_ON= -DGRAPHICSMAGICK:BOOL=YES GRAPHICSMAGICK_CMAKE_OFF= -DGRAPHICSMAGICK:BOOL=NO GRIB_DESC= Support GRIB messages GRIB_LIB_DEPENDS= libgrib_api.so:science/grib_api GRIB_CMAKE_ON= -DGRIB:BOOL=YES GRIB_CMAKE_OFF= -DGRIB:BOOL=NO HDF5_LIB_DEPENDS= libhdf5.so:science/hdf5 HDF5_CMAKE_ON= -DHDF5:BOOL=YES HDF5_CMAKE_OFF= -DHDF5:BOOL=NO -DHDF:BOOL=NO LIBPROJ4_DESC= Support cartographic processes LIBPROJ4_LIB_DEPENDS= libproj.so:graphics/proj LIBPROJ4_CMAKE_ON= -DLIBPROJ4:BOOL=YES LIBPROJ4_CMAKE_OFF= -DLIBPROJ4:BOOL=NO MPICH2_LIB_DEPENDS= libmpich.so.8:net/mpich2 MPICH2_CMAKE_ON= -DMPICH:BOOL=YES MPICH2_CMAKE_OFF= -DMPICH:BOOL=NO NETCDF_LIB_DEPENDS= libnetcdf.so:science/netcdf NETCDF_CMAKE_ON= -DNETCDF:BOOL=YES -DHDF:BOOL=NO NETCDF_CMAKE_OFF= -DNETCDF:BOOL=NO PYTHON_USES= python PYTHON_BUILD_DEPENDS= ${PYNUMPY} PYTHON_RUN_DEPENDS= ${PYNUMPY} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib PYTHON_CMAKE_ON= -DPYTHON:BOOL=YES -DPYTHONVERSION:STRING="${PYTHON_VER}" PYTHON_CMAKE_OFF= -DPYTHON:BOOL=NO QHULL_DESC= Enable Qhull support QHULL_LIB_DEPENDS= libqhull.so:math/qhull QHULL_CMAKE_ON= -DQHULL:BOOL=YES QHULL_CMAKE_OFF= -DQHULL:BOOL=NO UDUNITS_LIB_DEPENDS= libudunits2.so:science/udunits UDUNITS_CMAKE_ON= -DUDUNITS:BOOL=YES UDUNITS_CMAKE_OFF= -DUDUNITS:BOOL=NO .if defined(BUILD_PYTHON_MODULE) CATEGORIES+= python CMAKE_ARGS+= -DPYTHON_MODULE:BOOL=YES -DOPENMP:BOOL=NO PLIST= pkg-plist.pymod .else CMAKE_ARGS+= -DPYTHON_MODULE:BOOL=NO .endif .if defined(BUILD_PYTHON_MODULE) do-install: ${MKDIR} ${STAGEDIR}${PYTHON_SITELIBDIR} ${INSTALL_DATA} ${INSTALL_WRKSRC}/src/libgdl.so ${STAGEDIR}${PYTHON_SITELIBDIR}/GDL.so .endif .if !defined(BUILD_PYTHON_MODULE) post-install: ${MKDIR} ${STAGEDIR}${EXAMPLESDIR}/testsuite (cd ${WRKSRC}/testsuite && ${COPYTREE_SHARE} \* ${STAGEDIR}${EXAMPLESDIR}/testsuite/) .endif .if defined(MAINTAINER_MODE) regression-test: install . if defined(BUILD_PYTHON_MODULE) @${ECHO_CMD} 'import GDL' > ${WRKDIR}/testgdl.py @${ECHO_CMD} 'print GDL.function("sin",(1,))' >> ${WRKDIR}/testgdl.py ${PYTHON_CMD} ${WRKDIR}/testgdl.py . else @${ECHO_CMD} ".RUN ${EXAMPLESDIR}/testsuite/test_suite.pro" \ > ${WRKDIR}/testgdl @${ECHO_CMD} "exit" >> ${WRKDIR}/testgdl ${PREFIX}/bin/gdl < ${WRKDIR}/testgdl . endif .endif .include Index: head/science/grib_api/Makefile =================================================================== --- head/science/grib_api/Makefile (revision 452601) +++ head/science/grib_api/Makefile (revision 452602) @@ -1,40 +1,41 @@ # Created by: Sunpoet Po-Chuan Hsieh # $FreeBSD$ PORTNAME= grib_api PORTVERSION= 1.23.1 DISTVERSIONSUFFIX= -Source +PORTREVISION= 1 CATEGORIES= science MASTER_SITES= https://software.ecmwf.int/wiki/download/attachments/3473437/ \ LOCAL/sunpoet MAINTAINER= sunpoet@FreeBSD.org COMMENT= ECMWF API for WMO FM-92 GRIB messages LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE LIB_DEPENDS= libnetcdf.so:science/netcdf \ libpng.so:graphics/png OPTIONS_SINGLE= JPEG OPTIONS_SINGLE_JPEG= JASPER OPENJPEG OPTIONS_DEFAULT=OPENJPEG PORTSCOUT= site:https://software.ecmwf.int/wiki/display/GRIB/Releases CONFIGURE_ARGS= --enable-pthread --with-netcdf=${LOCALBASE} --with-png-support GNU_CONFIGURE= yes INSTALL_TARGET= install-strip USE_LDCONFIG= yes USES= libtool pathfix JASPER_CONFIGURE_ON= --with-jasper=${LOCALBASE} JASPER_LIB_DEPENDS= libjasper.so:graphics/jasper OPENJPEG_CONFIGURE_ON= --with-openjpeg=${LOCALBASE} OPENJPEG_LIB_DEPENDS= libopenjpeg.so:graphics/openjpeg15 post-install: ${INSTALL_SCRIPT} ${WRKSRC}/tools/grib1to2 ${STAGEDIR}${PREFIX}/bin/grib1to2 .include Index: head/science/kst2/Makefile =================================================================== --- head/science/kst2/Makefile (revision 452601) +++ head/science/kst2/Makefile (revision 452602) @@ -1,65 +1,65 @@ # Created by: Markus Brueffer # $FreeBSD$ PORTNAME= kst DISTVERSION= 2.0.8 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= science kde MASTER_SITES= SF/${PORTNAME}/Kst%20${DISTVERSION:C/-r.*//}/ DISTNAME= Kst-${DISTVERSION} MAINTAINER= ports@FreeBSD.org COMMENT= Data viewing and plotting tool LIB_DEPENDS= libgsl.so:math/gsl USES= cmake:outsource pkgconfig _USE_QT4= gui xml designer svg linguisttools_build \ qmake_build moc_build rcc_build uic_build _USE_QT5= concurrent network printsupport widgets xml \ buildtools_build linguisttools_build qmake_build USE_LDCONFIG= yes CMAKE_ARGS+= -Dkst_install_prefix=${PREFIX} \ -Dkst_pch=off PLIST_SUB= SHLIB_VER=${PORTVERSION} OPTIONS_DEFINE= FITS MATLAB NETCDF OPTIONS_SINGLE= TOOLKIT OPTIONS_SINGLE_TOOLKIT= QT4 QT5 OPTIONS_DEFAULT= QT4 OPTIONS_SUB= yes FITS_DESC= Support for data in FITS format FITS_LIB_DEPENDS= libcfitsio.so:astro/cfitsio MATLAB_DESC= Support for data in MATLAB format MATLAB_LIB_DEPENDS= libmatio.so:math/matio NETCDF_DESC= Support for data in NetCDF format (broken) NETCDF_LIB_DEPENDS= libnetcdf.so:science/netcdf NETCDF_IGNORE= does not support NetCDF 4 TOOLKIT_DESC= Qt toolkit QT4_USE= ${_USE_QT4:S/^/QT4=/} QT5_USE= ${_USE_QT5:S/^/QT5=/} QT5_CMAKE_ON= -Dkst_qt5=on post-patch: ${REINPLACE_CMD} -e '/^Exec=kst2/s,\(kst2\).*,\1 %f,' \ ${WRKSRC}/src/kst/kst2.desktop post-patch-FITS-off: ${REINPLACE_CMD} -e '/find_package(CFITSIO)/d' \ ${CMAKE_SOURCE_PATH}/CMakeLists.txt post-patch-MATLAB-off: ${REINPLACE_CMD} -e '/find_package(Matio)/d' \ ${CMAKE_SOURCE_PATH}/CMakeLists.txt post-patch-NETCDF-off: ${REINPLACE_CMD} -e '/find_package(Netcdf)/d' \ ${CMAKE_SOURCE_PATH}/CMakeLists.txt .include Index: head/science/minc2/Makefile =================================================================== --- head/science/minc2/Makefile (revision 452601) +++ head/science/minc2/Makefile (revision 452602) @@ -1,45 +1,45 @@ # Created by: jbacon # $FreeBSD$ PORTNAME= minc PORTVERSION= 2.2.00 DISTVERSIONPREFIX= release- -PORTREVISION= 5 +PORTREVISION= 6 PORTEPOCH= 1 CATEGORIES= science biology PKGNAMESUFFIX= 2 MAINTAINER= ports@FreeBSD.org COMMENT= Medical Imaging NetCDF LICENSE= MIT LICENSE_FILE= ${WRKSRC}/COPYING LIB_DEPENDS= libhdf5.so:science/hdf5 \ libnetcdf.so:science/netcdf RUN_DEPENDS= bash:shells/bash USE_GITHUB= yes GH_ACCOUNT= BIC-MNI MAKE_JOBS_UNSAFE= yes USES= autoreconf bison gmake libtool perl5 shebangfix SHEBANG_FILES= progs/mincview/mincview GNU_CONFIGURE= yes CONFIGURE_ARGS= --enable-shared=yes --enable-static=yes INSTALL_TARGET= install-strip USE_LDCONFIG= yes CFLAGS+= -Wno-error=return-type CPPFLAGS+= -I${LOCALBASE}/include LDFLAGS+= -L${LOCALBASE}/lib CONFLICTS= minc-1* zh-tk-[0-9]* pre-patch: @${RM} ${WRKSRC}/ac_config_aux/* @${RM} ${WRKSRC}/progs/minccalc/gram.[ch] @${RM} ${WRKSRC}/progs/mincgen/ncgentab.[ch] .include Index: head/science/netcdf/Makefile =================================================================== --- head/science/netcdf/Makefile (revision 452601) +++ head/science/netcdf/Makefile (revision 452602) @@ -1,57 +1,56 @@ # Created by: Sunpoet Po-Chuan Hsieh # $FreeBSD$ PORTNAME= netcdf -PORTVERSION= 4.4.1.1 -PORTREVISION= 1 +PORTVERSION= 4.5.0 CATEGORIES= science MASTER_SITES= http://www.unidata.ucar.edu/downloads/netcdf/ftp/ \ ftp://ftp.unidata.ucar.edu/pub/netcdf/ \ LOCAL/sunpoet MAINTAINER= sunpoet@FreeBSD.org COMMENT= C library for machine-independent, array-oriented data access LICENSE= UCAR_UNIDATA -LICENSE_FILE= ${WRKSRC}/COPYRIGHT LICENSE_NAME= University Corporation for Atmospheric Research/Unidata +LICENSE_FILE= ${WRKSRC}/COPYRIGHT LICENSE_PERMS= dist-mirror dist-sell pkg-mirror pkg-sell auto-accept LIB_DEPENDS= libhdf5.so:science/hdf5 CONFLICTS_INSTALL= hdf-4.[0-9]* netcdf-3.[0-9]* netcdf3-3.[0-9]* OPTIONS_DEFINE= DAP DOCS DOXYGEN SZIP OPTIONS_DEFAULT=DAP SZIP DAP_DESC= Build DAP client and remote testing SZIP_DESC= SZIP support (required if HDF5 was built with SZIP) CONFIGURE_ARGS= --enable-netcdf-4 CPPFLAGS+= -fPIC -DPIC GNU_CONFIGURE= yes INSTALL_TARGET= install-strip TEST_TARGET= check USE_LDCONFIG= yes USES= libtool localbase ncurses pathfix pkgconfig:run DAP_CONFIGURE_ENABLE= dap DAP_LIB_DEPENDS= libcurl.so:ftp/curl DOXYGEN_BUILD_DEPENDS= doxygen:devel/doxygen DOXYGEN_CONFIGURE_ENABLE= doxygen DOXYGEN_IMPLIES= DOCS DOXYGEN_PORTDOCS= * SZIP_LIB_DEPENDS= libsz.so:science/szip SZIP_LIBS= -lsz post-patch: @${REINPLACE_CMD} -e 's|-ldl ||g' ${WRKSRC}/configure @${REINPLACE_CMD} -e 's|mmap|_&|g' ${WRKSRC}/nc_test/tst_diskless.c ${WRKSRC}/nc_test/tst_diskless3.c post-build-DOXYGEN-on: cd ${WRKSRC}/docs/ && ${LOCALBASE}/bin/doxygen . post-install-DOXYGEN-on: ${MKDIR} ${STAGEDIR}${DOCSDIR}/ cd ${WRKSRC}/docs/html/ && ${COPYTREE_SHARE} . ${STAGEDIR}${DOCSDIR} .include Index: head/science/netcdf/distinfo =================================================================== --- head/science/netcdf/distinfo (revision 452601) +++ head/science/netcdf/distinfo (revision 452602) @@ -1,3 +1,3 @@ -TIMESTAMP = 1479797946 -SHA256 (netcdf-4.4.1.1.tar.gz) = 4d44c6f4d02a8faf10ea619bfe1ba8224cd993024f4da12988c7465f663c8cae -SIZE (netcdf-4.4.1.1.tar.gz) = 5250973 +TIMESTAMP = 1508612980 +SHA256 (netcdf-4.5.0.tar.gz) = cbe70049cf1643c4ad7453f86510811436c9580cb7a1684ada2f32b95b00ca79 +SIZE (netcdf-4.5.0.tar.gz) = 5494644 Index: head/science/netcdf/pkg-plist =================================================================== --- head/science/netcdf/pkg-plist (revision 452601) +++ head/science/netcdf/pkg-plist (revision 452602) @@ -1,19 +1,20 @@ bin/nc-config bin/nccopy bin/ncdump bin/ncgen bin/ncgen3 +bin/ocprint include/netcdf.h include/netcdf_mem.h include/netcdf_meta.h lib/libnetcdf.a lib/libnetcdf.settings lib/libnetcdf.so -lib/libnetcdf.so.11 -lib/libnetcdf.so.11.0.4 +lib/libnetcdf.so.13 +lib/libnetcdf.so.13.0.0 libdata/pkgconfig/netcdf.pc man/man1/nccopy.1.gz man/man1/ncdump.1.gz man/man1/ncgen.1.gz man/man1/ncgen3.1.gz man/man3/netcdf.3.gz Index: head/science/netcdf-cxx/Makefile =================================================================== --- head/science/netcdf-cxx/Makefile (revision 452601) +++ head/science/netcdf-cxx/Makefile (revision 452602) @@ -1,34 +1,35 @@ # Created by: Sunpoet Po-Chuan Hsieh # $FreeBSD$ PORTNAME= netcdf-cxx PORTVERSION= 4.3.0 DISTVERSIONPREFIX= v +PORTREVISION= 1 CATEGORIES= science MAINTAINER= sunpoet@FreeBSD.org COMMENT= C++ library for machine-independent, array-oriented data access LICENSE= UCAR_UNIDATA LICENSE_FILE= ${WRKSRC}/COPYRIGHT LICENSE_NAME= University Corporation for Atmospheric Research/Unidata LICENSE_PERMS= dist-mirror dist-sell pkg-mirror pkg-sell auto-accept LIB_DEPENDS= libnetcdf.so:science/netcdf CONFLICTS= netcdf-3.* netcdf-4.[0-2].* CPPFLAGS+= -fPIC -DPIC GNU_CONFIGURE= yes TEST_TARGET= check USE_LDCONFIG= yes USES= libtool localbase pathfix GH_ACCOUNT= Unidata GH_PROJECT= ${PORTNAME}4 USE_GITHUB= yes post-install: ${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/libnetcdf_c++4.so.1 .include Index: head/science/netcdf-fortran/Makefile =================================================================== --- head/science/netcdf-fortran/Makefile (revision 452601) +++ head/science/netcdf-fortran/Makefile (revision 452602) @@ -1,34 +1,34 @@ # Created by: Sunpoet Po-Chuan Hsieh # $FreeBSD$ PORTNAME= netcdf-fortran PORTVERSION= 4.4.4 -PORTREVISION= 3 +PORTREVISION= 4 DISTVERSIONPREFIX= v CATEGORIES= science MAINTAINER= sunpoet@FreeBSD.org COMMENT= Fortran library for machine-independent, array-oriented data access LICENSE= UCAR_UNIDATA LICENSE_FILE= ${WRKSRC}/COPYRIGHT LICENSE_NAME= University Corporation for Atmospheric Research/Unidata LICENSE_PERMS= dist-mirror dist-sell pkg-mirror pkg-sell auto-accept LIB_DEPENDS= libnetcdf.so:science/netcdf CPPFLAGS+= -fPIC -DPIC -DgFortran GNU_CONFIGURE= yes MAKE_ENV= MAKEINFOFLAGS=--no-split MAKE_JOBS_UNSAFE= yes TEST_TARGET= check USE_LDCONFIG= yes USES= fortran libtool localbase makeinfo pathfix GH_ACCOUNT= Unidata USE_GITHUB= yes post-install: ${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/libnetcdff.so.6.1.1 .include Index: head/science/py-netCDF4/Makefile =================================================================== --- head/science/py-netCDF4/Makefile (revision 452601) +++ head/science/py-netCDF4/Makefile (revision 452602) @@ -1,57 +1,58 @@ # Created by: Wen Heping # $FreeBSD$ PORTNAME= netCDF4 PORTVERSION= 1.2.9 DISTVERSIONPREFIX= v DISTVERSIONSUFFIX= rel +PORTREVISION= 1 CATEGORIES= science python PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= bofh@FreeBSD.org COMMENT= Python Interface to the NetCDF Library (versions 3 and 4) LICENSE= MIT BUILD_DEPENDS= ${PYNUMPY} \ ${LOCALBASE}/bin/cython:lang/cython LIB_DEPENDS= libhdf5.so:science/hdf5 \ libnetcdf.so:science/netcdf RUN_DEPENDS:= ${BUILD_DEPENDS} OPTIONS_DEFINE= DOCS EXAMPLES USES= python USE_PYTHON= autoplist distutils DOCSDIR= ${PREFIX}/share/doc/py-${PORTNAME} EXAMPLESDIR= ${PREFIX}/share/examples/py-${PORTNAME} PORTDOCS= * PORTEXAMPLES= * GH_ACCOUNT= Unidata GH_PROJECT= netcdf4-python USE_GITHUB= yes post-patch: @${ECHO_CMD} -n > ${WRKSRC}/setup.cfg @${ECHO_CMD} "[options]" >> ${WRKSRC}/setup.cfg @${ECHO_CMD} "use_ncconfig=True" >> ${WRKSRC}/setup.cfg @${ECHO_CMD} "ncconfig=${LOCALBASE}/bin/nc-config" >> ${WRKSRC}/setup.cfg @${ECHO_CMD} "[directories]" >> ${WRKSRC}/setup.cfg @${ECHO_CMD} "HDF5_libdir=${LOCALBASE}/lib" >> ${WRKSRC}/setup.cfg @${ECHO_CMD} "HDF5_incdir=${LOCALBASE}/include" >> ${WRKSRC}/setup.cfg post-install: ${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/netCDF4/_netCDF4.so ${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/netcdftime/_netcdftime.so post-install-DOCS-on: @${MKDIR} ${STAGEDIR}${DOCSDIR} (cd ${WRKSRC}/docs && ${COPYTREE_SHARE} . ${STAGEDIR}${DOCSDIR}) post-install-EXAMPLES-on: @${MKDIR} ${STAGEDIR}${EXAMPLESDIR} (cd ${WRKSRC}/examples && ${INSTALL_DATA} * ${STAGEDIR}${EXAMPLESDIR}) .include Index: head/science/pycdf/Makefile =================================================================== --- head/science/pycdf/Makefile (revision 452601) +++ head/science/pycdf/Makefile (revision 452602) @@ -1,26 +1,26 @@ # Created by: wenheping@gmail.com # $FreeBSD$ PORTNAME= pycdf PORTVERSION= 0.6.3 -PORTREVISION= 5 +PORTREVISION= 6 CATEGORIES= science python MASTER_SITES= SF/pysclint/${PORTNAME}/${PORTNAME}-${PORTVERSION}b DISTNAME= ${PORTNAME}-0.6-3b MAINTAINER= ports@FreeBSD.org COMMENT= Python Interface to the Unidata NetCDF Library LIB_DEPENDS= libnetcdf.so:science/netcdf BUILD_DEPENDS= ${PYNUMPY} RUN_DEPENDS:= ${BUILD_DEPENDS} LDFLAGS+= "-L${LOCALBASE}/lib" USES= python USE_PYTHON= distutils autoplist post-install: ${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/pycdf/_pycdfext.so .include Index: head/science/rubygem-ruby-netcdf/Makefile =================================================================== --- head/science/rubygem-ruby-netcdf/Makefile (revision 452601) +++ head/science/rubygem-ruby-netcdf/Makefile (revision 452602) @@ -1,19 +1,20 @@ # Created by: Shin-ya Murakami # $FreeBSD$ PORTNAME= ruby-netcdf PORTVERSION= 0.7.2 +PORTREVISION= 1 CATEGORIES= science rubygems MASTER_SITES= RG MAINTAINER= ruby@FreeBSD.org COMMENT= Ruby interface to the NetCDF scientific IO library LIB_DEPENDS= libnetcdf.so:science/netcdf RUN_DEPENDS= rubygem-narray>=0:math/rubygem-narray \ rubygem-narray_miss>=0:math/rubygem-narray_miss USE_RUBY= yes USES= gem .include Index: head/science/v_sim/Makefile =================================================================== --- head/science/v_sim/Makefile (revision 452601) +++ head/science/v_sim/Makefile (revision 452602) @@ -1,86 +1,86 @@ # Created by: Thierry Thomas # $FreeBSD$ PORTNAME= v_sim PORTVERSION= 3.7.2 -PORTREVISION= 5 +PORTREVISION= 6 CATEGORIES= science MASTER_SITES= http://inac.cea.fr/L_Sim/V_Sim/download/ MAINTAINER= thierry@FreeBSD.org COMMENT= Visualization of atomic structures LICENSE= CeCILL LICENSE_NAME= CeCILL LICENSE_FILE= ${WRKSRC}/COPYING LICENSE_PERMS= dist-mirror dist-sell pkg-mirror pkg-sell auto-accept LIB_DEPENDS= libfontconfig.so:x11-fonts/fontconfig \ libfreetype.so:print/freetype2 \ libftgl.so:graphics/ftgl USES= fortran gmake libtool pkgconfig tar:bzip2 USE_XORG= x11 USE_GNOME= gtk20 intltool cairo USE_GL= yes GNU_CONFIGURE= yes CONFIGURE_ARGS= --disable-gtk-doc --with-html-dir=${PREFIX}/share/doc --disable-python-module CPPFLAGS+= ${CFLAGS} -I${LOCALBASE}/include LDFLAGS+= -L${LOCALBASE}/lib USE_LDCONFIG= yes INSTALLS_ICONS= yes INSTALL_TARGET= install-strip OPTIONS_DEFINE= DOCS NLS EXAMPLES .include .if ${PORT_OPTIONS:MNLS} USES+= gettext PLIST_SUB+= NLS="" .else PLIST_SUB+= NLS="@comment " .endif .if !defined(WITHOUT_CDF) LIB_DEPENDS+= libnetcdf.so:science/netcdf CONFIGURE_ARGS+=--with-netcdf=${LOCALBASE} PLIST_SUB+= CDF="" .else CONFIGURE_ARGS+=--without-netcdf PLIST_SUB+= CDF="@comment " .endif .if !defined(WITHOUT_BABEL) LIB_DEPENDS+= libopenbabel.so:science/openbabel CONFIGURE_ARGS+=--with-openbabel PLIST_SUB+= BABEL="" .else CONFIGURE_ARGS+=--without-openbabel PLIST_SUB+= BABEL="@comment " .endif pre-configure: ${REINPLACE_CMD} -e 's|$$datadir/doc/$$PACKAGE/examples|${EXAMPLESDIR}|' \ -e 's| CFLAGS="-O2"|#CFLAGS="-O2"|;s|Werror ansi pedantic-errors||' \ -e 's| FCFLAGS="-O2"|FCFLAGS=${FFLAGS}|;s|$${docdir}/examples|${EXAMPLESDIR}|' \ ${WRKSRC}/${CONFIGURE_SCRIPT} .if ! ${PORT_OPTIONS:MNLS} ${REINPLACE_CMD} -e 's| po ||' \ ${WRKSRC}/Makefile.in .endif .if ! ${PORT_OPTIONS:MDOCS} ${REINPLACE_CMD} -e 's|Documentation||' \ ${WRKSRC}/Makefile.in .endif .if ! ${PORT_OPTIONS:MEXAMPLES} ${REINPLACE_CMD} -e 's|pixmaps \\|pixmaps|;s|examples$$||' \ ${WRKSRC}/Makefile.in ${FIND} ${WRKSRC}/lib/plug-ins -name Makefile.in | ${XARGS} \ ${REINPLACE_CMD} -e \ 's|install-v_simexamplesDATA install-v_simpixmapsDATA|install-v_simpixmapsDATA|' ${REINPLACE_CMD} -e 's|: install-v_simexamplesDATA|:|' \ ${WRKSRC}/lib/python/Makefile.in .endif .include Index: head/science/vmd/Makefile =================================================================== --- head/science/vmd/Makefile (revision 452601) +++ head/science/vmd/Makefile (revision 452602) @@ -1,170 +1,170 @@ # Created by: Stephen Montgomery-Smith # $FreeBSD$ PORTNAME= vmd DISTVERSION= 1.9.3 -PORTREVISION= 3 +PORTREVISION= 4 CATEGORIES= science graphics python tcl tk MASTER_SITES= http://jedi.ks.uiuc.edu/~johns/raytracer/files/0.99b6/:tachyon \ http://www.photonlimited.com/~johns/tachyon/files/0.99b6/:tachyon \ http://webclu.bio.wzw.tum.de/stride/:stride \ ftp://ftp.ebi.ac.uk/pub/software/unix/stride/src/:stride DISTFILES= ${VMD_DIST} \ ${TACHYON_DIST}:tachyon \ ${STRIDE_DIST}:stride MAINTAINER= dbn@FreeBSD.org COMMENT= Molecular visualization program LICENSE= VMD BSD3CLAUSE STRIDE LICENSE_COMB= multi BUILD_DEPENDS= makedepend:devel/makedepend \ ${PYNUMPY} LIB_DEPENDS= libexpat.so:textproc/expat2 \ libfltk.so:x11-toolkits/fltk \ libnetcdf.so:science/netcdf RUN_DEPENDS= ${PYNUMPY} LICENSE_FILE_VMD= ${WRKSRC}/LICENSE LICENSE_PERMS_VMD= auto-accept LICENSE_NAME_VMD= Visual Molecular Dynamics Software License Agreement LICENSE_DISTFILES_VMD= ${VMD_DIST} LICENSE_FILE_BSD3CLAUSE= ${WRKSRC}/lib/tachyon/Copyright LICENSE_DISTFILES_BSD3CLAUSE= ${TACHYON_DIST} LICENSE_TEXT_STRIDE= ${FILESDIR}/stride.txt LICENSE_PERMS_STRIDE= dist-mirror pkg-mirror auto-accept LICENSE_NAME_STRIDE= Stride Copyright Notice LICENSE_DISTFILES_STRIDE=${STRIDE_DIST} USES= gmake perl5 python shebangfix sqlite tcl tk SHEBANG_FILES= ${WRKDIR}/plugins/topotools/*.tcl USE_PERL5= build USE_GL= gl glu USE_XORG= x11 ONLY_FOR_ARCHS= i386 amd64 CONFIGURE_ENV= PYTHON_INCLUDE_DIR=${PYTHON_INCLUDEDIR} \ PYTHON_LIBRARY_DIR=${PYTHON_LIBDIR} \ NUMPY_INCLUDE_DIR=${PYTHON_SITELIBDIR}/numpy/core/include \ NUMPY_LIBRARY_DIR=${PYTHON_SITELIBDIR} \ TCL_INCLUDE_DIR=${TCL_INCLUDEDIR} \ TCL_LIBRARY_DIR=${LOCALBASE}/lib \ TK_INCLUDE_DIR=${TK_INCLUDEDIR} \ TK_LIBRARY_DIR=${LOCALBASE}/lib CONFIGURE_ARGS= ${VMD_ARCH} OPENGL FLTK TK IMD TCL PTHREADS LIBTACHYON NETCDF NUMPY PYTHON INSTALL_WRKSRC= ${WRKSRC}/src MAKE_ENV= EXPATINC=-I${LOCALBASE}/include \ EXPATLIB=-L${LOCALBASE}/lib \ EXPATLDFLAGS=-lexpat \ EXPATDYNAMIC=1 \ NETCDFINC=-I${LOCALBASE}/include \ NETCDFLIB=-L${LOCALBASE}/lib \ NETCDFLDFLAGS=-lnetcdf \ SQLITEINC=-I${LOCALBASE}/include \ SQLITELIB=-L${LOCALBASE}/lib \ SQLITELDFLAGS=-lsqlite3 \ SQLITEDYNAMIC=1 \ TCLLIB=-L${LOCALBASE}/lib \ TCLINC=-I${TCL_INCLUDEDIR} \ TCLLDFLAGS=-ltcl${TCL_VER:S/.//} \ TKLDFLAGS="-ltk${TK_VER:S/.//} -lX11" VMD_DIST= ${PORTNAME}-${DISTVERSION}.src.tar.gz TACHYON_DIST= tachyon-0.99b6.tar.gz STRIDE_DIST= stride.tar.gz STRIDE_DOC= stride.doc .include .if ${ARCH} == "amd64" VMD_ARCH= FREEBSDAMD64 .else VMD_ARCH= FREEBSD .endif PLIST_SUB+= VMD_ARCH=${VMD_ARCH} # Check for VMD sources .if !exists(${DISTDIR}/${VMD_DIST}) IGNORE= license restrictions require manual fetching of the distribution\ source. Please visit http://www.ks.uiuc.edu/Development/Download/download.cgi?PackageName=VMD\ with a browser. You will be required to register, log in, and accept\ the University of Illinois agreement before you can download the\ ${VMD_DIST} source file. Place this file in ${DISTDIR} and try again. .endif do-extract: ${MKDIR} ${WRKDIR} ${WRKSRC}/lib/stride ${TAR} -xzf ${DISTDIR}/${VMD_DIST} -C ${WRKDIR} ${TAR} -xzf ${WRKSRC}/lib/surf/surf.tar.Z -C ${WRKSRC}/lib/surf ${TAR} -xzf ${DISTDIR}/${TACHYON_DIST} -C ${WRKSRC}/lib ${TAR} -xzf ${DISTDIR}/${STRIDE_DIST} -C ${WRKSRC}/lib/stride post-patch: ${REINPLACE_CMD} \ -e "s|-lpython2.5|-l${PYTHON_VERSION}${PYTHON_ABIVER}|" \ -e "s|/usr/local|${LOCALBASE}|g" \ -e "s|-fno-for-scope||g" \ -e "s/\"gcc\"/\"${CC}\"/;s/\"g++\"/\"${CXX}\"/" \ ${WRKSRC}/configure ${REINPLACE_CMD} -e "s/.SILENT:/#.SILENT:/" ${WRKDIR}/plugins/Makefile ${REINPLACE_CMD} "s/.SILENT:/#.SILENT:/" ${WRKDIR}/plugins/*/Makefile ${REINPLACE_CMD} "s%log2f(\([^ ,]*\))%logf(\1)/(float)M_LN2%g" \ ${WRKSRC}/src/Orbital.C ${REINPLACE_CMD} -E "s/(SHLD[[:space:]]*=[[:space:]]*)gcc/\1${CC}/" \ ${WRKDIR}/plugins/Make-arch ${REINPLACE_CMD} -E "s/(CC[[:space:]]*=[[:space:]]*)(gcc|cc)/\1${CC}/" \ ${WRKSRC}/lib/stride/Makefile \ ${WRKSRC}/lib/surf/Makefile \ ${WRKSRC}/lib/tachyon/unix/Make-arch \ ${WRKDIR}/plugins/cionize/Makefile.specialbuilds \ ${WRKDIR}/plugins/cionize/Makefile.mine \ ${WRKDIR}/plugins/cionize/Makefile.testing \ ${WRKDIR}/plugins/Make-arch \ ${WRKDIR}/plugins/molfile_plugin/f77/Makefile ${REINPLACE_CMD} -E "s/(CXX[[:space:]]*=[[:space:]]*)g\+\+/\1${CXX}/" \ ${WRKDIR}/plugins/fmtool/Makefile.specialbuilds \ ${WRKDIR}/plugins/hesstrans/src/foo/Makefile \ ${WRKDIR}/plugins/hesstrans/src/foo/nm_gnu.mak \ ${WRKDIR}/plugins/Make-arch ${REINPLACE_CMD} -e "s/return *;/return 0;/g" \ ${WRKSRC}/lib/surf/*.c do-build: ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${_MAKE_JOBS} bsd -C ${WRKSRC}/lib/tachyon/unix ${MV} ${WRKSRC}/lib/tachyon/compile/bsd/tachyon ${WRKSRC}/lib/tachyon/tachyon_${VMD_ARCH} ${SETENV} ${MAKE_ENV} PLUGINDIR=${WRKSRC}/plugins ${MAKE_CMD} ${VMD_ARCH} distrib -C ${WRKDIR}/plugins cd ${WRKSRC} && ${SETENV} ${CONFIGURE_ENV} ${CONFIGURE_CMD} ${CONFIGURE_ARGS} ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${_MAKE_JOBS} all -C ${WRKSRC}/src ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${_MAKE_JOBS} depend -C ${WRKSRC}/lib/surf ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${_MAKE_JOBS} surf -C ${WRKSRC}/lib/surf ${MV} ${WRKSRC}/lib/surf/surf ${WRKSRC}/lib/surf/surf_${VMD_ARCH} ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${_MAKE_JOBS} -C ${WRKSRC}/lib/stride ${MV} ${WRKSRC}/lib/stride/stride ${WRKSRC}/lib/stride/stride_${VMD_ARCH} post-install: ${REINPLACE_CMD} -i '' -e 's|${STAGEDIR}||g' ${STAGEDIR}${PREFIX}/bin/vmd ${STRIP_CMD} ${STAGEDIR}${LOCALBASE}/lib/vmd/*${VMD_ARCH} \ ${STAGEDIR}${LOCALBASE}/lib/vmd/plugins/${VMD_ARCH}/molfile/*.so .for f in tcl/autopsf1.6/psfcheck.so tcl/hesstrans1.0/hesstrans.so \ tcl/mutator1.5/libalchemify.so tcl/pmepot1.0/libpmepot.so \ tcl/psfgen1.6/libpsfgen.so tcl/rnaview1.1/rnaview \ tcl/signalproc1.1/specden.so tcl/signalproc1.1/fftcmds.so \ tcl/signalproc1.1/sgsmooth.so tcl/volutil1.3/volutil \ tcl/clustalw1.1/clustalw tcl/libbiokit1.1/tcl_libbiokit.so \ tcl/libbiokit1.1/q tcl/libbiokit1.1/seqqr \ tcl/libbiokit1.1/structqr tcl/libbiokit1.1/qpair \ tcl/libbiokit1.1/rmsd tcl/libbiokit1.1/percid \ tcl/phylotree1.2/upgmaclu tcl/stamp1.2/stamp \ tcl/bossconvert1.0/Topology \ bin/catdcd5.1/catdcd bin/cionize1.0/cionize ${STRIP_CMD} ${STAGEDIR}${LOCALBASE}/lib/vmd/plugins/${VMD_ARCH}/${f} .endfor .include