Index: head/biology/artemis/Makefile
===================================================================
--- head/biology/artemis/Makefile	(revision 451980)
+++ head/biology/artemis/Makefile	(revision 451981)
@@ -1,36 +1,35 @@
 # Created by: camson@bilateral.com.au
 # $FreeBSD$
 
 PORTNAME=	artemis
 PORTVERSION=	9
 PORTREVISION=	2
 CATEGORIES=	biology java
-MASTER_SITES=	http://www.sanger.ac.uk/Software/Artemis/v${PORTVERSION}/ \
-		ftp://ftp.sanger.ac.uk/pub/pathogens/software/artemis/v${PORTVERSION}/
+MASTER_SITES=	http://www.sanger.ac.uk/Software/Artemis/v${PORTVERSION}/
 DISTNAME=	artemis_compiled_v${PORTVERSION}
 
 MAINTAINER=	ports@FreeBSD.org
 COMMENT=	DNA sequence viewer and annotation tool
 
 WRKSRC=		${WRKDIR}/${PORTNAME}
 
 USES=		shebangfix
 SHEBANG_FILES=	etc/go_associations.pl
 perl_OLD_CMD=	/usr/local/bin/perl5.6.1
 USE_JAVA=	yes
 JAVA_VERSION=	1.6+
 NO_ARCH=	yes
 
 NO_BUILD=	yes
 PLIST_SUB=	PORTVERSION="${PORTVERSION}"
 
 post-extract:
 	@${FIND} ${WRKSRC} -type d -name CVS -exec ${RM} -r {} +
 
 do-install:
 	@${MKDIR} ${STAGEDIR}${PREFIX}/${PORTNAME}-${PORTVERSION}
 	@${TAR} -C ${WRKSRC} -cf- . | ${TAR} -C ${STAGEDIR}${PREFIX}/${PORTNAME}-${PORTVERSION} -xpf-
 	@${LN} -s ../${PORTNAME}-${PORTVERSION}/art ${STAGEDIR}${PREFIX}/bin/art
 	@${LN} -s ../${PORTNAME}-${PORTVERSION}/act ${STAGEDIR}${PREFIX}/bin/act
 
 .include <bsd.port.mk>
Index: head/biology/hmmer/Makefile
===================================================================
--- head/biology/hmmer/Makefile	(revision 451980)
+++ head/biology/hmmer/Makefile	(revision 451981)
@@ -1,47 +1,49 @@
 # Created by: barnhart@genetics.wustl.edu
 # $FreeBSD$
 
 PORTNAME=	hmmer
 PORTVERSION=	3.0
 PORTREVISION=	1
 CATEGORIES=	biology
 MASTER_SITES=	ftp://selab.janelia.org/pub/software/hmmer3/3.0/ \
 		http://selab.janelia.org/software/hmmer3/3.0/
 
 MAINTAINER=	bacon4000@gmail.com
 COMMENT=	Profile hidden Markov models for biological sequence analysis
 
+BROKEN=		No public distfiles
+
 LICENSE=	GPLv3
 LICENSE_FILE=	${WRKSRC}/LICENSE
 
 GNU_CONFIGURE=	yes
 USES=		perl5
 CONFIGURE_ARGS+=--enable-threads
 
 DOCFILES=	COPYRIGHT INSTALL LICENSE Userguide.pdf
 EXAMPLES=	7LESS_DROME Pkinase.sto fn3.sto globins4.sto minifam.h3f minifam.h3p \
 		HBB_HUMAN fn3.hmm globins4.hmm globins45.fa minifam.h3i \
 		Pkinase.hmm fn3.out globins4.out minifam minifam.h3m
 
 OPTIONS_DEFINE=	DOCS EXAMPLES
 
 .include <bsd.port.options.mk>
 
 # HMMER is useless without SSE and any PC in use today should support it
 # Should probably also do enable-vmx on Power processors to enable
 # Altivec/VMX, but I don't have a machine to test this.
 .if ${ARCH} == "amd64" || ${ARCH} == "i386"
 CONFIGURE_ARGS+=--enable-sse
 .endif
 
 post-install:
 	@${STRIP_CMD} ${STAGEDIR}${PREFIX}/bin/*
 	(cd ${WRKSRC}/documentation/man; for i in *.man; do \
 		${INSTALL_MAN} $$i ${STAGEDIR}${PREFIX}/man/man1/`echo $$i|${SED} 's/.man/.1/'`; \
 	done)
 	@${MKDIR} ${STAGEDIR}${DOCSDIR}
 	${INSTALL_DATA} ${DOCFILES:S,^,${WRKSRC}/,} ${STAGEDIR}${DOCSDIR}
 	@${MKDIR} ${STAGEDIR}${EXAMPLESDIR}
 	${INSTALL_DATA} ${EXAMPLES:S,^,${WRKSRC}/tutorial/,} ${STAGEDIR}${EXAMPLESDIR}
 
 .include <bsd.port.mk>