Index: head/science/vmd/files/patch-plugins__hesstrans__Makefile =================================================================== --- head/science/vmd/files/patch-plugins__hesstrans__Makefile (revision 437679) +++ head/science/vmd/files/patch-plugins__hesstrans__Makefile (nonexistent) @@ -1,11 +0,0 @@ ---- ../plugins/hesstrans/Makefile.orig 2012-03-19 19:58:44.000000000 -0400 -+++ ../plugins/hesstrans/Makefile 2012-03-19 19:59:01.000000000 -0400 -@@ -12,7 +12,7 @@ - ARCHDIR=${COMPILEDIR}/lib_${ARCH}/tcl/hesstrans$(VERSION) - SRCDIR=src - INCDIR=-Isrc --CXXFLAGS = -g $(CXXFLAGS) -+CXXFLAGS += -g - VPATH = src ${ARCHDIR} - - ## Property changes on: head/science/vmd/files/patch-plugins__hesstrans__Makefile ___________________________________________________________________ Deleted: fbsd:nokeywords ## -1 +0,0 ## -yes \ No newline at end of property Deleted: svn:eol-style ## -1 +0,0 ## -native \ No newline at end of property Deleted: svn:mime-type ## -1 +0,0 ## -text/plain \ No newline at end of property Index: head/science/vmd/files/patch-stride.c =================================================================== --- head/science/vmd/files/patch-stride.c (revision 437679) +++ head/science/vmd/files/patch-stride.c (nonexistent) @@ -1,11 +0,0 @@ ---- lib/stride/stride.c-xxx Fri Dec 17 18:18:42 2004 -+++ lib/stride/stride.c Fri Dec 17 18:19:21 2004 -@@ -93,7 +93,7 @@ - for( i=0; i> for DJGPP compiler under DOS and for SunOS; also suitable for other machines - --CC = cc -O2 -+CC = cc ${CFLAGS} -O2 - FLAGS = -lm -o - - SOURCE = stride.c splitstr.c rdpdb.c initchn.c geometry.c thr2one.c one2thr.c filename.c tolostr.c strutil.c place_h.c hbenergy.c memory.c helix.c sheet.c rdmap.c phipsi.c command.c molscr.c die.c hydrbond.c mergepat.c fillasn.c escape.c p_jrnl.c p_rem.c p_atom.c p_helix.c p_sheet.c p_turn.c p_ssbond.c p_expdta.c p_model.c p_compnd.c report.c nsc.c area.c ssbond.c chk_res.c chk_atom.c turn.c pdbasn.c dssp.c outseq.c chkchain.c elem.c measure.c asngener.c p_endmdl.c stred.c Property changes on: head/science/vmd/files/patch-stride_Makefile ___________________________________________________________________ Deleted: fbsd:nokeywords ## -1 +0,0 ## -yes \ No newline at end of property Deleted: svn:eol-style ## -1 +0,0 ## -native \ No newline at end of property Deleted: svn:mime-type ## -1 +0,0 ## -text/plain \ No newline at end of property Index: head/science/vmd/files/patch-lib_stride_Makefile =================================================================== --- head/science/vmd/files/patch-lib_stride_Makefile (nonexistent) +++ head/science/vmd/files/patch-lib_stride_Makefile (revision 437680) @@ -0,0 +1,26 @@ +--- lib/stride/Makefile.orig 2003-04-08 12:03:14 UTC ++++ lib/stride/Makefile +@@ -1,12 +1,12 @@ + #FLAGS = -lm -L/usr/pub/lib -lefence -o + #CC = cc -O2 -fullwarn -TENV:large_GOT + #CC = cc -g -Wall +-CC = gcc -O2 # at least for SunOS ++#CC = gcc -O2 # at least for SunOS + #CC = cc -g + + #CC = cc -O2 -fullwarn + +-#CC = cc -O2 ++CC = cc ${CFLAGS} -O2 + FLAGS = -lm -o + + SOURCE = stride.c splitstr.c rdpdb.c initchn.c geometry.c thr2one.c one2thr.c filename.c tolostr.c strutil.c place_h.c hbenergy.c memory.c helix.c sheet.c rdmap.c phipsi.c command.c molscr.c die.c hydrbond.c mergepat.c fillasn.c escape.c p_jrnl.c p_rem.c p_atom.c p_helix.c p_sheet.c p_turn.c p_ssbond.c p_expdta.c p_model.c p_compnd.c report.c nsc.c area.c ssbond.c chk_res.c chk_atom.c turn.c pdbasn.c dssp.c outseq.c chkchain.c elem.c measure.c asngener.c p_endmdl.c stred.c contact_order.c contact_map.c +@@ -20,7 +20,7 @@ BINDIR = . + + + stride : $(OBJECT) +- $(CC) $(OBJECT) $(FLAGS) $(BINDIR)/stride${ARCH} ++ $(CC) $(OBJECT) $(FLAGS) $(BINDIR)/stride + + $(OBJECT) : stride.h protot.h + Property changes on: head/science/vmd/files/patch-lib_stride_Makefile ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/science/vmd/files/stride.txt =================================================================== --- head/science/vmd/files/stride.txt (nonexistent) +++ head/science/vmd/files/stride.txt (revision 437680) @@ -0,0 +1,24 @@ +All rights reserved, whether the whole or part of the program is +concerned. Permission to use, copy, and modify this software and its +documentation is granted for academic use, provided that: + + i. this copyright notice appears in all copies of the software and + related documentation; + + ii. the reference given below (Frishman and Argos, 1995) must be + cited in any publication of scientific results based in part or + completely on the use of the program; + +iii. bugs will be reported to the authors. + +The use of the software in commercial activities is not allowed +without a prior written commercial license agreement. + +WARNING: STRIDE is provided "as-is" and without warranty of any kind, +express, implied or otherwise, including without limitation any +warranty of merchantability or fitness for a particular purpose. In no +event will the authors be liable for any special, incidental, indirect +or consequential damages of any kind, or any damages whatsoever +resulting from loss of data or profits, whether or not advised of the +possibility of damage, and on any theory of liability, arising out of +or in connection with the use or performance of this software. Property changes on: head/science/vmd/files/stride.txt ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property