Index: head/biology/plinkseq/Makefile
===================================================================
--- head/biology/plinkseq/Makefile	(revision 434940)
+++ head/biology/plinkseq/Makefile	(revision 434941)
@@ -1,44 +1,45 @@
 # Created by: Jason Bacon <bacon4000@gmail.com>
 # $FreeBSD$
 
 PORTNAME=	plinkseq
 PORTVERSION=	0.10
+PORTREVISION=	1
 CATEGORIES=	biology science
 MASTER_SITES=	http://psychgen.u.hpc.mssm.edu/plinkseq_downloads/
 # Default DISTNAME is correct, so leave it alone.
 DISTFILES=	${PORTNAME}-src-${PORTVERSION}.tgz
 
 MAINTAINER=	bacon4000@gmail.com
 COMMENT=	Toolset for working with human genetic variation data
 
 LICENSE=	GPLv2
 
 BROKEN_aarch64=		Does not build: Host architecture was not detected as supported by protobuf
 BROKEN_mips64=		Does not build: Host architecture was not detected as supported by protobuf
 BROKEN_powerpc64=	Does not build
 
 USES=		libtool gmake
 
 post-patch:
 	${REINPLACE_CMD} \
 		-e 's|PF_INET|AF_INET|g' \
 		${WRKSRC}/sources/mongoose/sources/lib/mongoose.c
 	${REINPLACE_CMD} \
 		-e 's|g++|${CXX}|g' \
 		-e 's|gcc|${CC}|g' \
 		-e 's|CXXFLAGS = -O3|CXXFLAGS = ${CXXFLAGS}|g' \
 		-e 's|ALL_CFLAGS =-O3|ALL_CFLAGS = ${CFLAGS}|g' \
 		${WRKSRC}/config_defs.Makefile
 	${REINPLACE_CMD} \
 		-e 's| -ldl||g' \
 		-e 's| $$(STATIC_FLAG)||g' \
 		${WRKSRC}/Makefile
 
 do-install:
 .for f in behead browser gcol mm mongoose pdas pseq smp tab2vcf
 	${INSTALL_PROGRAM} ${WRKSRC}/build/execs/${f} ${STAGEDIR}${PREFIX}/bin
 .endfor
 	${INSTALL_DATA} ${WRKSRC}/sources/plinkseq/build/lib/libplinkseq.a \
 		${STAGEDIR}${PREFIX}/lib
 
 .include <bsd.port.mk>
Index: head/biology/plinkseq/files/patch-sources_plinkseq_sources_lib_r8lib.cpp
===================================================================
--- head/biology/plinkseq/files/patch-sources_plinkseq_sources_lib_r8lib.cpp	(nonexistent)
+++ head/biology/plinkseq/files/patch-sources_plinkseq_sources_lib_r8lib.cpp	(revision 434941)
@@ -0,0 +1,11 @@
+--- sources/plinkseq/sources/lib/r8lib.cpp.orig	2014-07-09 14:37:16 UTC
++++ sources/plinkseq/sources/lib/r8lib.cpp
+@@ -31828,7 +31828,7 @@ void r8vec_index_sorted_range ( int n, d
+   if ( r_hi < r[indx[*i_hi]] )
+   {
+     *i_hi = *i_hi - 1;
+-    if ( i_hi < 0 )
++    if ( *i_hi < 0 )
+     {
+       *i_lo = *i_hi + 1;
+     }

Property changes on: head/biology/plinkseq/files/patch-sources_plinkseq_sources_lib_r8lib.cpp
___________________________________________________________________
Added: fbsd:nokeywords
## -0,0 +1 ##
+yes
\ No newline at end of property
Added: svn:eol-style
## -0,0 +1 ##
+native
\ No newline at end of property
Added: svn:mime-type
## -0,0 +1 ##
+text/plain
\ No newline at end of property