Index: head/science/vmd/Makefile =================================================================== --- head/science/vmd/Makefile (revision 430911) +++ head/science/vmd/Makefile (revision 430912) @@ -1,163 +1,163 @@ # Created by: Stephen Montgomery-Smith # $FreeBSD$ PORTNAME= vmd DISTVERSION= 1.9.3 PORTREVISION= 1 CATEGORIES= science graphics python tcl tk MASTER_SITES= http://jedi.ks.uiuc.edu/~johns/raytracer/files/0.99b6/:tachyon \ http://www.photonlimited.com/~johns/tachyon/files/0.99b6/:tachyon \ http://webclu.bio.wzw.tum.de/stride/:stride \ ftp://ftp.ebi.ac.uk/pub/software/unix/stride/src/:stride DISTFILES= ${VMD_DIST} \ ${TACHYON_DIST}:tachyon \ ${STRIDE_DIST}:stride MAINTAINER= dbn@FreeBSD.org COMMENT= Molecular visualization program LICENSE= VMD BSD3CLAUSE STRIDE LICENSE_COMB= multi BUILD_DEPENDS= makedepend:devel/makedepend \ - ${NUMPY} + ${PYNUMPY} LIB_DEPENDS= libtcl85.so:lang/tcl85 \ libtk85.so:x11-toolkits/tk85 \ libfltk.so:x11-toolkits/fltk \ libnetcdf.so:science/netcdf -RUN_DEPENDS= ${NUMPY} +RUN_DEPENDS= ${PYNUMPY} LICENSE_FILE_VMD= ${WRKSRC}/LICENSE LICENSE_PERMS_VMD= auto-accept LICENSE_NAME_VMD= Visaul Molecular Dynamics Software License Agreement LICENSE_DISTFILES_VMD= ${VMD_DIST} LICENSE_FILE_BSD3CLAUSE= ${WRKSRC}/lib/tachyon/Copyright LICENSE_DISTFILES_BSD3CLAUSE= ${TACHYON_DIST} LICENSE_TEXT_STRIDE= ${FILESDIR}/stride.txt LICENSE_PERMS_STRIDE= dist-mirror pkg-mirror auto-accept LICENSE_NAME_STRIDE= Stride Copyright Notice LICENSE_DISTFILES_STRIDE=${STRIDE_DIST} USES= gmake perl5 python USE_PERL5= build USE_GL= gl glu USE_XORG= x11 ONLY_FOR_ARCHS= i386 amd64 CONFIGURE_ENV= PYTHON_INCLUDE_DIR=${PYTHON_INCLUDEDIR} \ PYTHON_LIBRARY_DIR=${PYTHON_LIBDIR} \ NUMPY_INCLUDE_DIR=${PYTHON_SITELIBDIR}/numpy/core/include \ NUMPY_LIBRARY_DIR=${PYTHON_SITELIBDIR} INSTALL_WRKSRC= ${WRKSRC}/src VMD_DIST= ${PORTNAME}-${DISTVERSION}.src.tar.gz TACHYON_DIST= tachyon-0.99b6.tar.gz STRIDE_DIST= stride.tar.gz STRIDE_DOC= stride.doc .include .if ${ARCH} == "amd64" VMD_ARCH= FREEBSDAMD64 VMD_TARGET= freebsd.amd64.opengl .else VMD_ARCH= FREEBSD VMD_TARGET= freebsd.opengl .endif PLIST_SUB+= VMD_ARCH=${VMD_ARCH} # Check for VMD sources .if !exists(${DISTDIR}/${VMD_DIST}) IGNORE= license restrictions require manual fetching of the distribution\ source. Please visit http://www.ks.uiuc.edu/Development/Download/download.cgi?PackageName=VMD\ with a browser. You will be required to register, log in, and accept\ the University of Illinois agreement before you can download the\ ${VMD_DIST} source file. Place this file in ${DISTDIR} and try again. .endif do-extract: ${MKDIR} ${WRKDIR} ${WRKSRC}/lib/stride ${TAR} -xzf ${DISTDIR}/${VMD_DIST} -C ${WRKDIR} ${TAR} -xzf ${WRKSRC}/lib/surf/surf.tar.Z -C ${WRKSRC}/lib/surf ${TAR} -xzf ${DISTDIR}/${TACHYON_DIST} -C ${WRKSRC}/lib ${TAR} -xzf ${DISTDIR}/${STRIDE_DIST} -C ${WRKSRC}/lib/stride post-patch: ${REINPLACE_CMD} \ -e "s|-ltk8.5|-ltk85|" \ -e "s|-ltcl8.5|-ltcl85|" \ -e "s|-lpython2.5|-l${PYTHON_VERSION}${PYTHON_ABIVER}|" \ -e "s|%%PREFIX%%|${PREFIX}|g" \ -e "s|/usr/local|${LOCALBASE}|g" \ -e "s|-fno-for-scope||g" \ ${WRKSRC}/configure ${REINPLACE_CMD} "s/\"gcc\"/\"${CC}\"/;s/\"g++\"/\"${CXX}\"/" \ ${WRKSRC}/configure ${REINPLACE_CMD} -e "s/.SILENT:/#.SILENT:/" ${WRKDIR}/plugins/Makefile ${REINPLACE_CMD} "s/.SILENT:/#.SILENT:/" ${WRKDIR}/plugins/*/Makefile ${REINPLACE_CMD} "s%log2f(\([^ ,]*\))%logf(\1)/(float)M_LN2%g" \ ${WRKSRC}/src/Orbital.C ${REINPLACE_CMD} -E "s/(SHLD[[:space:]]*=[[:space:]]*)gcc/\1${CC}/" \ ${WRKDIR}/plugins/Make-arch ${REINPLACE_CMD} -E "s/(CC[[:space:]]*=[[:space:]]*)(gcc|cc)/\1${CC}/" \ ${WRKSRC}/lib/stride/Makefile \ ${WRKSRC}/lib/surf/Makefile \ ${WRKSRC}/lib/tachyon/unix/Make-arch \ ${WRKDIR}/plugins/cionize/Makefile.specialbuilds \ ${WRKDIR}/plugins/cionize/Makefile.mine \ ${WRKDIR}/plugins/cionize/Makefile.testing \ ${WRKDIR}/plugins/Make-arch \ ${WRKDIR}/plugins/molfile_plugin/f77/Makefile ${REINPLACE_CMD} -E "s/(CXX[[:space:]]*=[[:space:]]*)g\+\+/\1${CXX}/" \ ${WRKDIR}/plugins/fmtool/Makefile.specialbuilds \ ${WRKDIR}/plugins/hesstrans/src/foo/Makefile \ ${WRKDIR}/plugins/hesstrans/src/foo/nm_gnu.mak \ ${WRKDIR}/plugins/Make-arch ${REINPLACE_CMD} -e "s/return *;/return 0;/g" \ ${WRKSRC}/lib/surf/*.c do-build: ${SETENV} ${MAKE_ENV} ${MAKE_CMD} bsd -C ${WRKSRC}/lib/tachyon/unix \ && ${MV} ${WRKSRC}/lib/tachyon/compile/bsd/tachyon \ ${WRKSRC}/lib/tachyon/tachyon_${VMD_ARCH} ${SETENV} ${MAKE_ENV} TCLLIB=-L${PREFIX}/lib/tcl8.5 \ TCLINC=-I${PREFIX}/include/tcl8.5 PLUGINDIR=${WRKSRC}/plugins \ ${MAKE_CMD} ${VMD_ARCH} distrib -C ${WRKDIR}/plugins ${SETENV} ${MAKE_ENV} TCL_INCLUDE_DIR=${PREFIX}/include/tcl8.5 \ TK_INCLUDE_DIR=${PREFIX}/include/tk8.5 ${MAKE_CMD} \ ${VMD_TARGET} -C ${WRKSRC} ${SETENV} ${MAKE_ENV} ${MAKE_CMD} all -C ${WRKSRC}/src ${SETENV} ${MAKE_ENV} ${MAKE_CMD} depend -C ${WRKSRC}/lib/surf \ && ${SETENV} ${MAKE_ENV} ${MAKE_CMD} surf -C \ ${WRKSRC}/lib/surf \ && ${MV} ${WRKSRC}/lib/surf/surf \ ${WRKSRC}/lib/surf/surf_${VMD_ARCH} ${SETENV} ${MAKE_ENV} ${MAKE_CMD} -C ${WRKSRC}/lib/stride \ && ${MV} ${WRKSRC}/lib/stride/stride \ ${WRKSRC}/lib/stride/stride_${VMD_ARCH} post-install: ${REINPLACE_CMD} -i '' -e 's|${STAGEDIR}||g' ${STAGEDIR}${PREFIX}/bin/vmd ${STRIP_CMD} ${STAGEDIR}${LOCALBASE}/lib/vmd/*${VMD_ARCH} \ ${STAGEDIR}${LOCALBASE}/lib/vmd/plugins/${VMD_ARCH}/molfile/*.so .for f in tcl/autopsf1.6/psfcheck.so tcl/hesstrans1.0/hesstrans.so \ tcl/mutator1.5/libalchemify.so tcl/pmepot1.0/libpmepot.so \ tcl/psfgen1.6/libpsfgen.so tcl/rnaview1.1/rnaview \ tcl/signalproc1.1/specden.so tcl/signalproc1.1/fftcmds.so \ tcl/signalproc1.1/sgsmooth.so tcl/volutil1.3/volutil \ tcl/clustalw1.1/clustalw tcl/libbiokit1.1/tcl_libbiokit.so \ tcl/libbiokit1.1/q tcl/libbiokit1.1/seqqr \ tcl/libbiokit1.1/structqr tcl/libbiokit1.1/qpair \ tcl/libbiokit1.1/rmsd tcl/libbiokit1.1/percid \ tcl/phylotree1.2/upgmaclu tcl/stamp1.2/stamp \ tcl/bossconvert1.0/Topology \ bin/catdcd5.1/catdcd bin/cionize1.0/cionize ${STRIP_CMD} ${STAGEDIR}${LOCALBASE}/lib/vmd/plugins/${VMD_ARCH}/${f} .endfor .include