Index: head/biology/ncbi-blast+/Makefile =================================================================== --- head/biology/ncbi-blast+/Makefile (revision 429169) +++ head/biology/ncbi-blast+/Makefile (revision 429170) @@ -1,55 +1,57 @@ # Created by: Jason Bacon # $FreeBSD$ PORTNAME= blast+ PORTVERSION= 2.5.0 CATEGORIES= biology MASTER_SITES= http://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${PORTVERSION}/ \ http://acadix.biz/Ports/distfiles/ PKGNAMEPREFIX= ncbi- DISTNAME= ncbi-blast-${PORTVERSION}+-src MAINTAINER= bacon4000@gmail.com COMMENT= NCBI implementation of Basic Local Alignment Search Tool LICENSE= PD LICENSE_FILE= ${WRKSRC}/scripts/projects/blast/LICENSE LIB_DEPENDS= libpcre.so:devel/pcre RUN_DEPENDS= p5-List-MoreUtils>=0:lang/p5-List-MoreUtils WRKSRC= ${WRKDIR}/${DISTNAME}/c++ GNU_CONFIGURE= yes USES= gmake shebangfix perl5 python SHEBANG_FILES= src/app/blast/legacy_blast.pl \ src/app/blast/update_blastdb.pl \ src/app/winmasker/windowmasker_2.2.22_adapter.py +MAKE_JOBS_UNSAFE= yes + # Requires openmp USE_GCC= yes USE_LDCONFIG= yes # The test for amq can hang, but amq is not needed so just avoid the test CONFIGURE_ENV= ncbi_cv_prog_amq_w=no # configure chooses /usr/local/bin/ar with no flags # FreeBSD boost port flagged by configure as untested version CONFIGURE_ARGS+=AR="ar cr" --without-boost # Fix "undefined _ThreadRuneLocale" error on 10.0 # Fix unknown options in configure # Add staging support to configure-generated Makefile post-patch: ${REINPLACE_CMD} \ -e 's|-D_THREAD_SAFE|-D_THREAD_SAFE -D__RUNETYPE_INTERNAL|' \ -e '/--infodir=DIR/d' \ -e '/--mandir=DIR/d' \ ${WRKSRC}/src/build-system/configure ${REINPLACE_CMD} -e 's|@prefix@|${STAGEDIR}@prefix@|g' \ ${WRKSRC}/src/build-system/Makefile.in.top post-install: ${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/*.so .include