Index: head/biology/Makefile =================================================================== --- head/biology/Makefile (revision 428941) +++ head/biology/Makefile (revision 428942) @@ -1,112 +1,113 @@ # $FreeBSD$ # COMMENT = Biology SUBDIR += ariadne SUBDIR += artemis SUBDIR += avida SUBDIR += babel SUBDIR += bcftools SUBDIR += bedtools SUBDIR += biococoa SUBDIR += biojava SUBDIR += blat SUBDIR += bowtie SUBDIR += bowtie2 SUBDIR += bwa SUBDIR += cd-hit SUBDIR += cdbfasta SUBDIR += chemeq SUBDIR += clustalw SUBDIR += consed SUBDIR += crux SUBDIR += diamond SUBDIR += emboss SUBDIR += fasta SUBDIR += fasta3 SUBDIR += fastdnaml SUBDIR += fastool SUBDIR += fasttree SUBDIR += fastx-toolkit SUBDIR += fluctuate SUBDIR += garlic SUBDIR += gff2ps SUBDIR += gmap SUBDIR += gperiodic SUBDIR += grappa SUBDIR += hmmer SUBDIR += htslib SUBDIR += iolib SUBDIR += jalview SUBDIR += jellyfish SUBDIR += lagan SUBDIR += lamarc SUBDIR += libgtextutils SUBDIR += libsbml SUBDIR += linux-foldingathome SUBDIR += mafft SUBDIR += mapm3 SUBDIR += migrate SUBDIR += molden SUBDIR += mopac SUBDIR += mrbayes SUBDIR += mummer SUBDIR += muscle SUBDIR += ncbi-blast+ SUBDIR += ncbi-toolkit SUBDIR += njplot SUBDIR += p5-AcePerl SUBDIR += p5-Bio-ASN1-EntrezGene + SUBDIR += p5-Bio-Coordinate SUBDIR += p5-Bio-Das SUBDIR += p5-Bio-Das-Lite SUBDIR += p5-Bio-GFF3 SUBDIR += p5-Bio-Glite SUBDIR += p5-Bio-Graphics SUBDIR += p5-Bio-MAGETAB SUBDIR += p5-Bio-NEXUS SUBDIR += p5-Bio-Phylo SUBDIR += p5-Bio-SCF SUBDIR += p5-BioPerl SUBDIR += p5-BioPerl-Run SUBDIR += p5-transdecoder SUBDIR += paml SUBDIR += phrap SUBDIR += phred SUBDIR += phylip SUBDIR += phyml SUBDIR += plink SUBDIR += plinkseq SUBDIR += primer3 SUBDIR += protomol SUBDIR += psi88 SUBDIR += py-biom-format SUBDIR += py-biopython SUBDIR += pycogent SUBDIR += pyfasta SUBDIR += python-nexus SUBDIR += recombine SUBDIR += ruby-bio SUBDIR += samtools SUBDIR += seaview SUBDIR += seqan SUBDIR += seqan-apps SUBDIR += seqan1 SUBDIR += seqio SUBDIR += seqtools SUBDIR += sim4 SUBDIR += slclust SUBDIR += ssaha SUBDIR += tRNAscan-SE SUBDIR += t_coffee SUBDIR += tinker SUBDIR += treepuzzle SUBDIR += treeviewx SUBDIR += trimmomatic SUBDIR += ugene SUBDIR += vcftools SUBDIR += velvet SUBDIR += wise SUBDIR += xmolwt .include Index: head/biology/p5-Bio-Coordinate/Makefile =================================================================== --- head/biology/p5-Bio-Coordinate/Makefile (nonexistent) +++ head/biology/p5-Bio-Coordinate/Makefile (revision 428942) @@ -0,0 +1,24 @@ +# Created by: Sunpoet Po-Chuan Hsieh +# $FreeBSD$ + +PORTNAME= Bio-Coordinate +PORTVERSION= 1.007001 +CATEGORIES= biology perl5 +MASTER_SITES= CPAN +PKGNAMEPREFIX= p5- + +MAINTAINER= sunpoet@FreeBSD.org +COMMENT= Modules for working with biological coordinates + +LICENSE= ART10 GPLv1 +LICENSE_COMB= dual +LICENSE_FILE= ${WRKSRC}/LICENSE + +BUILD_DEPENDS= p5-BioPerl>=1.007000:biology/p5-BioPerl +RUN_DEPENDS:= ${BUILD_DEPENDS} + +NO_ARCH= yes +USE_PERL5= configure +USES= perl5 + +.include Property changes on: head/biology/p5-Bio-Coordinate/Makefile ___________________________________________________________________ Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:keywords ## -0,0 +1 ## +FreeBSD=%H \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/biology/p5-Bio-Coordinate/distinfo =================================================================== --- head/biology/p5-Bio-Coordinate/distinfo (nonexistent) +++ head/biology/p5-Bio-Coordinate/distinfo (revision 428942) @@ -0,0 +1,3 @@ +TIMESTAMP = 1482042798 +SHA256 (Bio-Coordinate-1.007001.tar.gz) = 63c0a652ec60a2a905d71c85c08b96fcfb12fc784cac8a5d029eb9647d45d619 +SIZE (Bio-Coordinate-1.007001.tar.gz) = 44111 Property changes on: head/biology/p5-Bio-Coordinate/distinfo ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/biology/p5-Bio-Coordinate/pkg-descr =================================================================== --- head/biology/p5-Bio-Coordinate/pkg-descr (nonexistent) +++ head/biology/p5-Bio-Coordinate/pkg-descr (revision 428942) @@ -0,0 +1,4 @@ +Bio::Coordinate classes are used for working with various biological coordinate +systems. See Bio::Coordinate::Collection and Bio::Collection::Pair for examples. + +WWW: http://search.cpan.org/dist/Bio-Coordinate/ Property changes on: head/biology/p5-Bio-Coordinate/pkg-descr ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/biology/p5-Bio-Coordinate/pkg-plist =================================================================== --- head/biology/p5-Bio-Coordinate/pkg-plist (nonexistent) +++ head/biology/p5-Bio-Coordinate/pkg-plist (revision 428942) @@ -0,0 +1,26 @@ +%%SITE_PERL%%/Bio/Coordinate.pm +%%SITE_PERL%%/Bio/Coordinate/Chain.pm +%%SITE_PERL%%/Bio/Coordinate/Collection.pm +%%SITE_PERL%%/Bio/Coordinate/ExtrapolatingPair.pm +%%SITE_PERL%%/Bio/Coordinate/GeneMapper.pm +%%SITE_PERL%%/Bio/Coordinate/Graph.pm +%%SITE_PERL%%/Bio/Coordinate/MapperI.pm +%%SITE_PERL%%/Bio/Coordinate/Pair.pm +%%SITE_PERL%%/Bio/Coordinate/Result.pm +%%SITE_PERL%%/Bio/Coordinate/Result/Gap.pm +%%SITE_PERL%%/Bio/Coordinate/Result/Match.pm +%%SITE_PERL%%/Bio/Coordinate/ResultI.pm +%%SITE_PERL%%/Bio/Coordinate/Utils.pm +%%PERL5_MAN3%%/Bio::Coordinate.3.gz +%%PERL5_MAN3%%/Bio::Coordinate::Chain.3.gz +%%PERL5_MAN3%%/Bio::Coordinate::Collection.3.gz +%%PERL5_MAN3%%/Bio::Coordinate::ExtrapolatingPair.3.gz +%%PERL5_MAN3%%/Bio::Coordinate::GeneMapper.3.gz +%%PERL5_MAN3%%/Bio::Coordinate::Graph.3.gz +%%PERL5_MAN3%%/Bio::Coordinate::MapperI.3.gz +%%PERL5_MAN3%%/Bio::Coordinate::Pair.3.gz +%%PERL5_MAN3%%/Bio::Coordinate::Result.3.gz +%%PERL5_MAN3%%/Bio::Coordinate::Result::Gap.3.gz +%%PERL5_MAN3%%/Bio::Coordinate::Result::Match.3.gz +%%PERL5_MAN3%%/Bio::Coordinate::ResultI.3.gz +%%PERL5_MAN3%%/Bio::Coordinate::Utils.3.gz Property changes on: head/biology/p5-Bio-Coordinate/pkg-plist ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property