Index: head/science/ghmm/Makefile
===================================================================
--- head/science/ghmm/Makefile	(revision 397225)
+++ head/science/ghmm/Makefile	(revision 397226)
@@ -1,22 +1,24 @@
 # Created by: Cheng-Lung Sung <clsung@FreeBSD.org>
 # $FreeBSD$
 
 PORTNAME=	ghmm
-PORTVERSION=	0.7.0b
-PORTREVISION=	1
+DISTVERSION=	0.9-rc3
 CATEGORIES=	science math
-MASTER_SITES=	SF/${PORTNAME}/${PORTNAME}/${PORTNAME}%20${PORTVERSION}
+MASTER_SITES=	SF/${PORTNAME}/${PORTNAME}/${PORTNAME}%20${DISTVERSION}
 
 MAINTAINER=	ports@FreeBSD.org
 COMMENT=	General Hidden Markov Model Library in C
 
+LICENSE=	GPLv3
+
+#BUILD_DEPENDS=	swig:${PORTSDIR}/devel/swig13
+
 GNU_CONFIGURE=	yes
 INSTALL_TARGET=	install-strip
-USES=		libtool
-USE_LDCONFIG=	yes
-WRKSRC=	${WRKDIR}/${PORTNAME}-0.7.0
+USE_GNOME=	libxml2
+USES=		autoreconf libtool pkgconfig
+CONFIGURE_ARGS+=	--without-python
 
-post-patch:
-	@${REINPLACE_CMD} 's|tests doc VisualC|tests VisualC|' ${WRKSRC}/configure
+USE_LDCONFIG=	yes
 
 .include <bsd.port.mk>
Index: head/science/ghmm/distinfo
===================================================================
--- head/science/ghmm/distinfo	(revision 397225)
+++ head/science/ghmm/distinfo	(revision 397226)
@@ -1,2 +1,2 @@
-SHA256 (ghmm-0.7.0b.tar.gz) = a1e5a6fbd2c03901da974e192780cf880feab78baa648e10f50b819801bea7ed
-SIZE (ghmm-0.7.0b.tar.gz) = 761628
+SHA256 (ghmm-0.9-rc3.tar.gz) = c42462ff4f87aadd5efe7bb6adb59657786ed71046ba924111bc28c7cbb588d0
+SIZE (ghmm-0.9-rc3.tar.gz) = 770526
Index: head/science/ghmm/pkg-descr
===================================================================
--- head/science/ghmm/pkg-descr	(revision 397225)
+++ head/science/ghmm/pkg-descr	(revision 397226)
@@ -1,7 +1,7 @@
 The General Hidden Markov Model Library (GHMM) is a C library 
 with additional Python bindings implementing a wide range of 
 types of Hidden Markov Models and algorithms: 
 discrete, continous emissions, basic training, 
 HMM clustering, HMM mixtures.
 
-WWW:	http://ghmm.sourceforge.net/
+WWW: http://ghmm.sourceforge.net/
Index: head/science/ghmm/pkg-plist
===================================================================
--- head/science/ghmm/pkg-plist	(revision 397225)
+++ head/science/ghmm/pkg-plist	(revision 397226)
@@ -1,45 +1,43 @@
-bin/probdist
 bin/cluster
+bin/ghmm-config
+bin/probdist
 bin/scluster
 bin/smix_hmm
-bin/ghmm-config
-include/ghmm/ghmm.h
+include/ghmm/cfbgibbs.h
+include/ghmm/cluster.h
+include/ghmm/discrime.h
+include/ghmm/fbgibbs.h
 include/ghmm/foba.h
+include/ghmm/ghmm.h
+include/ghmm/ghmmconfig.h
+include/ghmm/gradescent.h
+include/ghmm/kbest.h
 include/ghmm/model.h
-include/ghmm/cluster.h
-include/ghmm/scluster.h
-include/ghmm/root_finder.h
+include/ghmm/obsolete.h
+include/ghmm/pmodel.h
+include/ghmm/psequence.h
+include/ghmm/pviterbi.h
+include/ghmm/pviterbi_propagate.h
 include/ghmm/reestimate.h
+include/ghmm/rng.h
+include/ghmm/scanner.h
+include/ghmm/scluster.h
+include/ghmm/sdfoba.h
+include/ghmm/sdmodel.h
 include/ghmm/sequence.h
-include/ghmm/viterbi.h
 include/ghmm/sfoba.h
-include/ghmm/sviterbi.h
-include/ghmm/smodel.h
-include/ghmm/sdmodel.h
-include/ghmm/sdfoba.h
-include/ghmm/sreestimate.h
 include/ghmm/sgenerate.h
-include/ghmm/smixturehmm.h
-include/ghmm/scanner.h
-include/ghmm/gauss_tail.h
 include/ghmm/smap_classify.h
-include/ghmm/kbest.h
-include/ghmm/gradescent.h
-include/ghmm/discrime.h
-include/ghmm/psequence.h
-include/ghmm/pmodel.h
-include/ghmm/linkedlist.h
-include/ghmm/pviterbi.h
-include/ghmm/pviterbi_propagate.h
-include/ghmm/vector.h
-include/ghmm/matrix.h
-include/ghmm/const.h
-include/ghmm/rng.h
-include/ghmm/mes.h
-include/ghmm/randvar.h
-include/ghmm/internal.h
+include/ghmm/smixturehmm.h
+include/ghmm/smodel.h
+include/ghmm/sreestimate.h
+include/ghmm/sviterbi.h
+include/ghmm/unsupported.h
+include/ghmm/viterbi.h
+include/ghmm/xmlreader.h
+include/ghmm/xmlwriter.h
 lib/libghmm.a
 lib/libghmm.so
-lib/libghmm.so.0
-lib/libghmm.so.0.0.7
-%%DATADIR%%/PHI_001_20.dat
+lib/libghmm.so.1
+lib/libghmm.so.1.0.0
+%%DATADIR%%/ghmm.dtd.1.0