Index: head/biology/mummer/Makefile
===================================================================
--- head/biology/mummer/Makefile	(revision 393580)
+++ head/biology/mummer/Makefile	(revision 393581)
@@ -1,40 +1,31 @@
 # Created by: Tony Maher
 # $FreeBSD$
 
 PORTNAME=	mummer
 PORTVERSION=	3.23
 PORTREVISION=	1
 CATEGORIES=	biology
 MASTER_SITES=	SF
 DISTNAME=	MUMmer${PORTVERSION}
 
 MAINTAINER=	ports@FreeBSD.org
 COMMENT=	Modular system for rapid whole genome alignment
 
 USES=		gmake perl5
 
 PROGRAMS=	annotate combineMUMs delta-filter gaps \
 		mgaps mummer repeat-match show-aligns \
 		show-coords show-diff show-snps show-tiling
 SCRIPTS=	dnadiff exact-tandems mapview mummerplot nucmer \
 		nucmer2xfig promer run-mummer1 run-mummer3
 DOCUMENTS=	COPYRIGHT INSTALL LICENSE README
 
 OPTIONS_DEFINE=	DOCS
 
-.include <bsd.port.options.mk>
-
-post-extract:
-	@${REINPLACE_CMD} -e 's,type perl,type ${LOCALBASE}/bin/perl,' ${WRKSRC}/scripts/Makefile
-.if ${OPSYS} == FreeBSD && ${OSVERSION} >= 1000024
-	@${REINPLACE_CMD} -e 's,type gcc,type clang,' ${WRKSRC}/Makefile
-	@${REINPLACE_CMD} -e 's,type g++,type clang++,' ${WRKSRC}/Makefile
-.endif
-
 do-install:
 	${INSTALL_PROGRAM} ${PROGRAMS:S|^|${WRKSRC}/|} ${STAGEDIR}${PREFIX}/bin
 	${INSTALL_SCRIPT} ${SCRIPTS:S|^|${WRKSRC}/|} ${STAGEDIR}${PREFIX}/bin
 	@${MKDIR} ${STAGEDIR}${DOCSDIR}
 	${INSTALL_DATA} ${DOCUMENTS:S|^|${WRKSRC}/|} ${STAGEDIR}${DOCSDIR}
 
 .include <bsd.port.mk>
Index: head/biology/mummer/files/patch-Makefile
===================================================================
--- head/biology/mummer/files/patch-Makefile	(nonexistent)
+++ head/biology/mummer/files/patch-Makefile	(revision 393581)
@@ -0,0 +1,20 @@
+--- Makefile.orig	2015-08-05 01:03:53 UTC
++++ Makefile
+@@ -35,16 +35,11 @@ SCRIPT_DIR    := $(TOP_DIR)/scripts
+ TIGR_SRC_DIR  := $(TOP_DIR)/src/tigr
+ KURTZ_SRC_DIR := $(TOP_DIR)/src/kurtz
+ 
+-CC   := $(filter /%,$(shell /bin/sh -c 'type gcc'))
+-CXX  := $(filter /%,$(shell /bin/sh -c 'type g++'))
+ SED  := $(filter /%,$(shell /bin/sh -c 'type sed'))
+ CSH  := $(filter /%,$(shell /bin/sh -c 'type csh'))
+-PERL := $(filter /%,$(shell /bin/sh -c 'type perl'))
++PERL := ${LOCALBASE}/bin/perl
+ AR   := $(filter /%,$(shell /bin/sh -c 'type ar'))
+ 
+-CXXFLAGS = -O3
+-CFLAGS = -O3
+-LDFLAGS  =
+ 
+ FLATS = ACKNOWLEDGEMENTS COPYRIGHT INSTALL LICENSE Makefile README ChangeLog
+ 

Property changes on: head/biology/mummer/files/patch-Makefile
___________________________________________________________________
Added: fbsd:nokeywords
## -0,0 +1 ##
+yes
\ No newline at end of property
Added: svn:eol-style
## -0,0 +1 ##
+native
\ No newline at end of property
Added: svn:mime-type
## -0,0 +1 ##
+text/plain
\ No newline at end of property