Index: head/biology/ugene/Makefile
===================================================================
--- head/biology/ugene/Makefile	(revision 392118)
+++ head/biology/ugene/Makefile	(revision 392119)
@@ -1,82 +1,77 @@
 # Created by: Hannes Hauswedell <h2+fbsdports@fsfe.org>
 # $FreeBSD$
 
 PORTNAME=	ugene
-DISTVERSION=	1.16.2
+DISTVERSION=	1.17.0
 CATEGORIES=	biology science
 MASTER_SITES=	http://ugene.unipro.ru/downloads/
 DISTFILES=	${DISTNAME}${EXTRACT_SUFX} QueryDesigner_UserManual.pdf \
 		UniproUGENE_UserManual.pdf WorkflowDesigner_UserManual.pdf
 DIST_SUBDIR=	${PORTNAME}
 EXTRACT_ONLY=	${DISTNAME}${EXTRACT_SUFX}
 
 MAINTAINER=	h2+fbsdports@fsfe.org
 COMMENT=	Free, open-source, cross-platform bioinformatics toolkit
 
 LICENSE=	GPLv2
 
 RUN_DEPENDS=	bash:${PORTSDIR}/shells/bash
 
 USES=		execinfo qmake
 USE_GL=		glu
 USE_QT4=	corelib gui network script webkit xml \
 		linguist_build moc_build qmake_build qtestlib_build \
 		rcc_build scripttools_build uic_build \
 		imageformats_run
 USE_XORG=	xtst
 USE_LDCONFIG=	yes
 INSTALLS_ICONS=	yes
 
 QMAKE_ARGS=	INSTALL_PREFIX="${PREFIX}" UGENE_INSTALL_DATA="${DATADIR}" \
 		INSTALL_MANDIR="${MAN1PREFIX}/man"
 ALL_TARGET=	release
 
 DOCSDIR=	${DATADIR}/manuals
 
 OPTIONS_DEFINE=	DOCS
 DOCS_DESC=	Install official UGENE documentation (PDF)
 
 .include <bsd.port.pre.mk>
 
 # Required for Google Test code
 .if ${OSVERSION} > 1000054
 CXXFLAGS+=	-std=c++11
 .endif
 
 .if ${ARCH} == amd64
 # XXX: need to manually tell the build we are on x64
 QMAKE_ARGS+=	CONFIG+=x64
 PLIST_SUB+=	NOX64="@comment "
 .else
 PLIST_SUB+=	NOX64=""
 .endif
 
 .if ${MACHINE_CPU:Msse2}
 QMAKE_ARGS+=	UGENE_SSE2_DETECTED=1
 PLIST_SUB+=	SSE2=""
 .else
 PLIST_SUB+=	SSE2="@comment "
 .endif
 
 post-extract:
 	${CP} -p ${_DISTDIR}/*.pdf ${WRKSRC}/data/manuals
 
 post-patch:
 # yes, bash is required, stuff will not execute with sh
 	@${REINPLACE_CMD} -e 's|/bin/bash|/usr/bin/env bash|' \
 		${WRKSRC}/src/gen_bin_script.cmd \
 		${WRKSRC}/installer/_common_data/ugene
-	@${REINPLACE_CMD} -e '/readproc\.h/d' \
-		${WRKSRC}/src/corelibs/U2Core/src/globals/AppResources.cpp
 	@${REINPLACE_CMD} -e 's|-bit version|& for ${OPSYS}|' \
 		${WRKSRC}/src/ugeneui/src/main_window/AboutDialogController.cpp
-	@${REINPLACE_CMD} -e '/ifdef/s|Q_OS_LINUX|Q_OS_UNIX|' \
-		${WRKSRC}/src/corelibs/U2Test/src/gui_tests/GUITestLauncher.cpp
+	@${REINPLACE_CMD} -e '/unix_not_mac/,+11d' \
+		${WRKSRC}/src/corelibs/U2Core/U2Core.pri
 .for x in ugenecl ugeneui plugins_checker
 	@${ECHO_CMD} 'LIBS += -lexecinfo' >> ${WRKSRC}/src/${x}/${x}.pro
 .endfor
-# remove BOM that gcc4.2 trips upon
-	@env LANG=C ${REINPLACE_CMD} -e 's,^...,,' \
-		${WRKSRC}/src/include/U2Formats/MysqlUpgradeTask.h
 
 .include <bsd.port.post.mk>
Index: head/biology/ugene/distinfo
===================================================================
--- head/biology/ugene/distinfo	(revision 392118)
+++ head/biology/ugene/distinfo	(revision 392119)
@@ -1,8 +1,8 @@
-SHA256 (ugene/ugene-1.16.2.tar.gz) = 6d001d57d7a3d46285173f7a00c307d43cc760e72e8b9f04c5c4cc0717a7078f
-SIZE (ugene/ugene-1.16.2.tar.gz) = 20604313
-SHA256 (ugene/QueryDesigner_UserManual.pdf) = d261125f8ad155ae022a47ecf504febfb45ae7740f822be9b0c508219bb732fb
-SIZE (ugene/QueryDesigner_UserManual.pdf) = 824789
-SHA256 (ugene/UniproUGENE_UserManual.pdf) = 94683abe849eecc88735d7748e75f4e30051d1dc8a6b148dbeb3d2ac4ed02a1d
-SIZE (ugene/UniproUGENE_UserManual.pdf) = 13237321
-SHA256 (ugene/WorkflowDesigner_UserManual.pdf) = 9dec38e2e5c89f6dbde328bf5ef17d81f5d1309812b8d2c5cf5864c1ad159eff
-SIZE (ugene/WorkflowDesigner_UserManual.pdf) = 22805160
+SHA256 (ugene/ugene-1.17.0.tar.gz) = d265a8a7d066e6cac2eeaa89645eb0ce1c0debeb9b321d80cea4a5595c082e08
+SIZE (ugene/ugene-1.17.0.tar.gz) = 20706555
+SHA256 (ugene/QueryDesigner_UserManual.pdf) = 17d7a68fdc9fc7ca2538c0b99a98a1f53cf664dc6207f98d9e4318eb35920847
+SIZE (ugene/QueryDesigner_UserManual.pdf) = 855679
+SHA256 (ugene/UniproUGENE_UserManual.pdf) = feee2712f81d24a84deb2f91fc0b13d64f051ff9c8b0129e862f8daafa8065a9
+SIZE (ugene/UniproUGENE_UserManual.pdf) = 13358880
+SHA256 (ugene/WorkflowDesigner_UserManual.pdf) = cc63575ccf85bf66ab8594c7209ee0628dd1a84165375f955eb5a191bbc5e233
+SIZE (ugene/WorkflowDesigner_UserManual.pdf) = 29393258