Index: head/biology/iolib/Makefile =================================================================== --- head/biology/iolib/Makefile (revision 391829) +++ head/biology/iolib/Makefile (revision 391830) @@ -1,20 +1,21 @@ # Created by: Wen Heping # $FreeBSD$ PORTNAME= io_lib -PORTVERSION= 1.13.10 +PORTVERSION= 1.14.0 CATEGORIES= biology MASTER_SITES= SF/staden/${PORTNAME}/${PORTVERSION} MAINTAINER= danilo@FreeBSD.org COMMENT= General purpose trace file (and Experiment File) reading interface LICENSE= BSD3CLAUSE LIB_DEPENDS= libcurl.so:${PORTSDIR}/ftp/curl USES= gmake libtool GNU_CONFIGURE= yes USE_LDCONFIG= yes +INSTALL_TARGET= install-strip .include Index: head/biology/iolib/distinfo =================================================================== --- head/biology/iolib/distinfo (revision 391829) +++ head/biology/iolib/distinfo (revision 391830) @@ -1,2 +1,2 @@ -SHA256 (io_lib-1.13.10.tar.gz) = e72c40104839e57c4c582a91b4714fef128fba154990173ce57804c6110d8bb9 -SIZE (io_lib-1.13.10.tar.gz) = 2101711 +SHA256 (io_lib-1.14.0.tar.gz) = e71c6026254cda7aabaebc2995f70fe73a012fc5441ca3c8e68ba2bc85d88b49 +SIZE (io_lib-1.14.0.tar.gz) = 2124378 Index: head/biology/iolib/pkg-plist =================================================================== --- head/biology/iolib/pkg-plist (revision 391829) +++ head/biology/iolib/pkg-plist (revision 391830) @@ -1,112 +1,112 @@ bin/append_sff bin/convert_trace bin/cram_dump bin/cram_index bin/extract_fastq bin/extract_qual bin/extract_seq bin/get_comment bin/hash_exp bin/hash_extract bin/hash_list bin/hash_sff bin/hash_tar bin/index_tar bin/io_lib-config bin/makeSCF bin/scf_dump bin/scf_info bin/scf_update bin/scram_flagstat bin/scram_merge bin/scram_pileup bin/scram_test bin/scramble bin/srf2fasta bin/srf2fastq bin/srf_dump_all bin/srf_extract_hash bin/srf_extract_linear bin/srf_filter bin/srf_index_hash bin/srf_info bin/srf_list bin/trace_dump bin/ztr_dump include/io_lib/Read.h include/io_lib/abi.h include/io_lib/alf.h include/io_lib/array.h include/io_lib/bam.h include/io_lib/binning.h include/io_lib/compress.h include/io_lib/compression.h include/io_lib/cram.h include/io_lib/cram_codecs.h include/io_lib/cram_decode.h include/io_lib/cram_encode.h include/io_lib/cram_index.h include/io_lib/cram_io.h include/io_lib/cram_stats.h include/io_lib/cram_structs.h include/io_lib/deflate_interlaced.h include/io_lib/dstring.h include/io_lib/error.h include/io_lib/expFileIO.h include/io_lib/fpoint.h include/io_lib/hash_table.h include/io_lib/io_lib_config.h include/io_lib/jenkins_lookup3.h include/io_lib/mFILE.h include/io_lib/mach-io.h include/io_lib/md5.h include/io_lib/misc.h include/io_lib/open_trace_file.h include/io_lib/os.h include/io_lib/plain.h include/io_lib/pooled_alloc.h include/io_lib/sam_header.h include/io_lib/scf.h include/io_lib/scf_extras.h include/io_lib/scram.h include/io_lib/seqIOABI.h include/io_lib/sff.h include/io_lib/srf.h include/io_lib/stdio_hack.h include/io_lib/string_alloc.h include/io_lib/tar_format.h include/io_lib/thread_pool.h include/io_lib/traceType.h include/io_lib/translate.h include/io_lib/vlen.h include/io_lib/xalloc.h include/io_lib/zfio.h include/io_lib/ztr.h lib/libstaden-read.a lib/libstaden-read.so lib/libstaden-read.so.1 -lib/libstaden-read.so.1.8.1 +lib/libstaden-read.so.1.9.1 man/man1/scramble.1.gz man/man1/srf2fasta.1.gz man/man1/srf2fastq.1.gz man/man1/srf_index_hash.1.gz man/man1/srf_info.1.gz man/man1/srf_list.1.gz man/man3/ExperimentFile.3.gz man/man3/exp2read.3.gz man/man3/fread_reading.3.gz man/man3/fread_scf.3.gz man/man3/fwrite_reading.3.gz man/man3/fwrite_scf.3.gz man/man3/read2exp.3.gz man/man3/read2scf.3.gz man/man3/read_allocate.3.gz man/man3/read_deallocate.3.gz man/man3/read_reading.3.gz man/man3/read_scf.3.gz man/man3/read_scf_header.3.gz man/man3/scf2read.3.gz man/man3/write_reading.3.gz man/man3/write_scf.3.gz man/man3/write_scf_header.3.gz man/man4/Read.4.gz