Index: head/biology/paml/Makefile =================================================================== --- head/biology/paml/Makefile (revision 383735) +++ head/biology/paml/Makefile (revision 383736) @@ -1,33 +1,31 @@ # Created by: dbader@eece.unm.edu # $FreeBSD$ PORTNAME= paml -PORTVERSION= 4.8 +PORTVERSION= 4.8a CATEGORIES= biology MASTER_SITES= http://abacus.gene.ucl.ac.uk/software/ DISTNAME= ${PORTNAME}${PORTVERSION} MAINTAINER= jrm@ftfl.ca COMMENT= Phylogenetic Analysis by Maximum Likelihood (PAML) -BROKEN= Unfetchable - USES= gmake tar:tgz -WRKSRC= ${WRKDIR}/${PORTNAME}${PORTVERSION}/src +WRKSRC= ${WRKDIR}/${PORTNAME}4.8/src MAKE_ARGS= CC="${CC}" CFLAGS="${CFLAGS}" BINARIES= baseml basemlg chi2 codeml evolver pamp yn00 DOC_FILES= pamlDOC.pdf pamlFAQs.pdf pamlHistory.txt OPTIONS_DEFINE= DOCS do-install: .for f in ${BINARIES} ${INSTALL_PROGRAM} ${WRKSRC}/${f} ${STAGEDIR}${PREFIX}/bin .endfor @${MKDIR} ${STAGEDIR}${DOCSDIR} .for f in ${DOC_FILES} - ${INSTALL_DATA} ${WRKDIR}/${PORTNAME}${PORTVERSION}/doc/${f} ${STAGEDIR}${DOCSDIR} + ${INSTALL_DATA} ${WRKSRC}/../doc/${f} ${STAGEDIR}${DOCSDIR} .endfor .include Index: head/biology/paml/distinfo =================================================================== --- head/biology/paml/distinfo (revision 383735) +++ head/biology/paml/distinfo (revision 383736) @@ -1,2 +1,2 @@ -SHA256 (paml4.8.tgz) = 67498283308824cd5a3986db382bec275432e817f6719b8faf99fa2509f32781 -SIZE (paml4.8.tgz) = 4835110 +SHA256 (paml4.8a.tgz) = e45f37e1cfc1c24de276266a7bc2926fc12eac9602c56c1c025bc8f6dfb737f3 +SIZE (paml4.8a.tgz) = 5879158