Index: head/biology/hmmer/Makefile
===================================================================
--- head/biology/hmmer/Makefile	(revision 383012)
+++ head/biology/hmmer/Makefile	(revision 383013)
@@ -1,40 +1,47 @@
 # Created by: barnhart@genetics.wustl.edu
 # $FreeBSD$
 
 PORTNAME=	hmmer
 PORTVERSION=	3.0
+PORTREVISION=	1
 CATEGORIES=	biology
 MASTER_SITES=	ftp://selab.janelia.org/pub/software/hmmer3/3.0/ \
 		http://selab.janelia.org/software/hmmer3/3.0/
 
-MAINTAINER=	ports@FreeBSD.org
+MAINTAINER=	jwbacon@tds.net
 COMMENT=	Profile hidden Markov models for biological sequence analysis
 
+LICENSE=	GPLv3
+LICENSE_FILE=	${WRKSRC}/LICENSE
+
 GNU_CONFIGURE=	yes
 USES=		perl5
-CONFIGURE_ARGS+=--enable-threads --enable-lfs
+CONFIGURE_ARGS+=--enable-threads
 
 DOCFILES=	COPYRIGHT INSTALL LICENSE Userguide.pdf
 EXAMPLES=	7LESS_DROME Pkinase.sto fn3.sto globins4.sto minifam.h3f minifam.h3p \
 		HBB_HUMAN fn3.hmm globins4.hmm globins45.fa minifam.h3i \
 		Pkinase.hmm fn3.out globins4.out minifam minifam.h3m
 
-OPTIONS_DEFINE=	PVM DOCS EXAMPLES
-PVM_DESC=	PVM support
+OPTIONS_DEFINE=	DOCS EXAMPLES
 
-PVM_CONFIGURE_ENV=	PVM_ROOT="${LOCALBASE}/lib/pvm" PVM_ARCH="FREEBSD"
-PVM_CONFIGURE_WITH=	pvm
-PVM_BUILD_DEPENDS=	pvm:${PORTSDIR}/net/pvm
+.include <bsd.port.options.mk>
 
+# HMMER is useless without SSE and any PC in use today should support it
+# Should probably also do enable-vmx on Power processors to enable
+# Altivec/VMX, but I don't have a machine to test this.
+.if ${ARCH} == "amd64" || ${ARCH} == "ia64" || ${ARCH} == "i386"
+CONFIGURE_ARGS+=--enable-sse
+.endif
+
 post-install:
+	@${STRIP_CMD} ${STAGEDIR}${PREFIX}/bin/*
 	(cd ${WRKSRC}/documentation/man; for i in *.man; do \
 		${INSTALL_MAN} $$i ${STAGEDIR}${PREFIX}/man/man1/`echo $$i|${SED} 's/.man/.1/'`; \
 	done)
-
 	@${MKDIR} ${STAGEDIR}${DOCSDIR}
 	${INSTALL_DATA} ${DOCFILES:S,^,${WRKSRC}/,} ${STAGEDIR}${DOCSDIR}
-
 	@${MKDIR} ${STAGEDIR}${EXAMPLESDIR}
 	${INSTALL_DATA} ${EXAMPLES:S,^,${WRKSRC}/tutorial/,} ${STAGEDIR}${EXAMPLESDIR}
 
 .include <bsd.port.mk>