Index: head/biology/velvet/Makefile =================================================================== --- head/biology/velvet/Makefile (revision 377442) +++ head/biology/velvet/Makefile (revision 377443) @@ -1,82 +1,83 @@ # Created by: Motomichi Matsuzaki # $FreeBSD$ PORTNAME= velvet PORTVERSION= 1.2.10 PORTREVISION= 2 CATEGORIES= biology MASTER_SITES= http://www.ebi.ac.uk/~zerbino/velvet/ DISTNAME= ${PORTNAME}_${PORTVERSION} MAINTAINER= mzaki@m.u-tokyo.ac.jp COMMENT= Sequence assembler for very short reads ALL_TARGET= default MAXKMERLENGTH?= 31 VELVET_CATEGORIES?= 2 +MAKE_JOBS_UNSAFE= yes MAKE_ENV+= MAXKMERLENGTH=${MAXKMERLENGTH} CATEGORIES=${VELVET_CATEGORIES} USES= perl5 gmake shebangfix tar:tgz USE_PERL5= run BINARIES= velvetg velveth SHEBANG_FILES= contrib/shuffleSequences_fasta/shuffleSequences_fasta.pl \ contrib/shuffleSequences_fasta/shuffleSequences_fastq.pl \ contrib/VelvetOptimiser-2.2.4/VelvetOptimiser.pl \ contrib/afg_handling/asmbly_splitter.pl \ contrib/afg_handling/snp_view.pl \ contrib/columbus_scripts/enlarge_exons.pl \ contrib/columbus_scripts/gff2fasta.pl \ contrib/columbus_scripts/merge_gtf_exons.pl \ contrib/estimate-exp_cov/velvet-estimate-exp_cov.pl \ contrib/extractContigReads/extractContigReads.pl \ contrib/fasta2agp/fasta2agp.pl \ contrib/observed-insert-length.pl/observed-insert-length.pl \ contrib/read_prepare/pe_read_prepare.0.1.pl \ contrib/select_paired/select_paired.pl \ contrib/show_repeats/show_repeats.pl PERLMOD_DIRS= contrib/VelvetOptimiser-2.2.4/VelvetOpt PERLMOD_FILES= contrib/VelvetOptimiser-2.2.4/VelvetOpt/Assembly.pm \ contrib/VelvetOptimiser-2.2.4/VelvetOpt/Utils.pm \ contrib/VelvetOptimiser-2.2.4/VelvetOpt/gwrap.pm \ contrib/VelvetOptimiser-2.2.4/VelvetOpt/hwrap.pm .if !defined(WITHOUT_PYTHON) USES+= python SHEBANG_FILES+= contrib/AssemblyAssembler1.3/AssemblyAssembler1.3.py .endif .for f in ${BINARIES} ${SHEBANG_FILES} PLIST_FILES+= bin/${f:T} .endfor .for d in ${PERLMOD_DIRS} PLIST_DIRS+= %%SITE_PERL%%/${d:T} .endfor .for f in ${PERLMOD_FILES} PLIST_FILES+= %%SITE_PERL%%/${f:H:T}/${f:T} .endfor PORTDOCS= ChangeLog Manual.pdf Columbus_manual.pdf OPTIONS_DEFINE= DOCS .include do-install: .for f in ${BINARIES} ${INSTALL_PROGRAM} ${WRKSRC}/${f} ${STAGEDIR}${PREFIX}/bin .endfor .for f in ${SHEBANG_FILES} ${INSTALL_SCRIPT} ${WRKSRC}/${f} ${STAGEDIR}${PREFIX}/bin/${f:T} .endfor .for d in ${PERLMOD_DIRS} ${MKDIR} ${STAGEDIR}${PREFIX}/${SITE_PERL_REL}/${d:T} .endfor .for f in ${PERLMOD_FILES} ${INSTALL_DATA} ${WRKSRC}/${f} ${STAGEDIR}${PREFIX}/${SITE_PERL_REL}/${f:H:T}/${f:T} .endfor ${MKDIR} ${STAGEDIR}${DOCSDIR} ${INSTALL_MAN} ${PORTDOCS:S|^|${WRKSRC}/|} ${STAGEDIR}${DOCSDIR} .include Index: head/graphics/apngasm/Makefile =================================================================== --- head/graphics/apngasm/Makefile (revision 377442) +++ head/graphics/apngasm/Makefile (revision 377443) @@ -1,38 +1,40 @@ # Created by: Anonymous # $FreeBSD$ PORTNAME= apngasm PORTVERSION= 2.9 PORTREVISION= 1 DISTVERSIONSUFFIX=-src CATEGORIES= graphics MASTER_SITES= SF/${PORTNAME}/${PORTVERSION} MAINTAINER= danilo@FreeBSD.org COMMENT= Create Animated PNG from a sequence of files LICENSE= ZLIB OPTIONS_DEFINE= DOCS STATIC NO_WRKSUBDIR= yes USES= dos2unix gmake zip LDFLAGS+= -lz PORTDOCS= readme.txt PLIST_FILES= bin/${PORTNAME} STATIC_BUILD_DEPENDS= ${LOCALBASE}/lib/libpng.a:${PORTSDIR}/graphics/png STATIC_MAKE_ENV= STATIC=1 STATIC_LIB_DEPENDS_OFF= libpng.so:${PORTSDIR}/graphics/png +MAKE_JOBS_UNSAFE= yes + do-install: (cd ${WRKSRC} && ${INSTALL_PROGRAM} ${PORTNAME} \ ${STAGEDIR}${PREFIX}/bin) @${MKDIR} ${STAGEDIR}${DOCSDIR} (cd ${WRKSRC} && ${INSTALL_DATA} ${PORTDOCS} \ ${STAGEDIR}${DOCSDIR}) .include Index: head/graphics/xaos/Makefile =================================================================== --- head/graphics/xaos/Makefile (revision 377442) +++ head/graphics/xaos/Makefile (revision 377443) @@ -1,66 +1,67 @@ # Created by: Joseph Koshy # $FreeBSD$ PORTNAME= xaos PORTVERSION= 3.6 PORTREVISION= 2 CATEGORIES= graphics math MASTER_SITES= SF/${PORTNAME}/XaoS/${PORTVERSION} MAINTAINER= makc@FreeBSD.org COMMENT= Real-time fractal browser LIB_DEPENDS= libpng.so:${PORTSDIR}/graphics/png \ libgsl.so:${PORTSDIR}/math/gsl USES= gmake GNU_CONFIGURE= yes OPTIONS_DEFINE= THREADS NLS OPTIONS_MULTI= DRIVER OPTIONS_MULTI_DRIVER= AALIB GTK2 X11 DRIVER_DESC= User Interface OPTIONS_DEFAULT= X11 OPTIONS_SUB= yes AALIB_LIB_DEPENDS= libaa.so:${PORTSDIR}/graphics/aalib AALIB_CONFIGURE_WITH= aa-driver AALIB_CONFIGURE_ON= ac_cv_aalib_ver_ok=yes GTK2_DESC= GTK+ User Interface (experimental) GTK2_USE= GNOME=gtk20 GTK2_USES= pkgconfig GTK2_CONFIGURE_WITH= gtk-driver X11_USE= XORG=x11,xext X11_CONFIGURE_WITH= x11-driver x NLS_USES= gettext iconv NLS_CONFIGURE_ENABLE= nls THREADS_DESC= Enable SMP support (experimental) THREADS_CONFIGURE_WITH= pthread THREADS_LIBS= ${PTHREAD_LIBS} CPPFLAGS+= -I${LOCALBASE}/include LIBS+= -L${LOCALBASE}/lib INFO= xaos PLIST_SUB+= XAOSDIR="share/XaoS" +MAKE_JOBS_UNSAFE= yes DESKTOP_ENTRIES= "XaoS" "" "${PREFIX}/share/pixmaps/xaos.png" \ "xaos" "" false pre-configure: ${REINPLACE_CMD} -e 's,/usr\(/share/locale\),${PREFIX}\1,g' \ ${WRKSRC}/configure \ ${WRKSRC}/src/ui/ui.c ${REINPLACE_CMD} 's,malloc.h,stdlib.h,' \ ${WRKSRC}/src/ui/ui-drv/aa/ui_aa.c post-install: ${INSTALL_DATA} ${WRKSRC}/src/ui/ui-drv/qt/images/xaosbig.png \ ${STAGEDIR}${PREFIX}/share/pixmaps/xaos.png .include Index: head/news/slrn/Makefile =================================================================== --- head/news/slrn/Makefile (revision 377442) +++ head/news/slrn/Makefile (revision 377443) @@ -1,42 +1,44 @@ # Created by: Carey Jones # $FreeBSD$ PORTNAME= slrn PORTVERSION= 1.0.2 CATEGORIES= news ipv6 MASTER_SITES= http://www.jedsoft.org/releases/slrn/ MAINTAINER= johans@FreeBSD.org COMMENT= SLang-based newsreader LIB_DEPENDS= libslang.so:${PORTSDIR}/devel/libslang2 CONFLICTS_INSTALL= ja-slrn-[0-9]* USES= gmake iconv tar:bz2 GNU_CONFIGURE= yes CONFIGURE_ARGS+=--disable-inews --with-slrnpull \ --with-non-gnu-iconv ${ICONV_CONFIGURE_ARG} ALL_TARGET= all +MAKE_JOBS_UNSAFE= yes + OPTIONS_DEFINE= NLS SSL DEVIEW DOCS OPTIONS_DEFAULT=NLS SSL OPTIONS_SUB= yes NLS_USES= gettext NLS_CONFIGURE_OFF= --disable-nls SSL_USE= OPENSSL SSL_CONFIGURE_WITH= ssl DEVIEW_DESC?= UUdecode view support DEVIEW_LIB_DEPENDS= libuu.so:${PORTSDIR}/converters/uulib DEVIEW_CONFIGURE_WITH= uulib DOCS_CONFIGURE_OFF= --with-docdir=${WRKSRC}/dummy post-patch: @${REINPLACE_CMD} -e 's,/usr/lib/sendmail,/usr/sbin/sendmail,' \ ${WRKSRC}/src/slrnfeat.hin @${REINPLACE_CMD} -e 's,malloc.h,stdlib.h,' \ ${WRKSRC}/src/jdmacros.h .include