Index: head/biology/artemis/pkg-plist =================================================================== --- head/biology/artemis/pkg-plist (revision 371236) +++ head/biology/artemis/pkg-plist (revision 371237) @@ -1,1811 +1,1780 @@ artemis-%%PORTVERSION%%/README artemis-%%PORTVERSION%%/act artemis-%%PORTVERSION%%/art artemis-%%PORTVERSION%%/artemis_sqlmap/Analysis.xml artemis-%%PORTVERSION%%/artemis_sqlmap/AnalysisFeature.xml artemis-%%PORTVERSION%%/artemis_sqlmap/CvTerm.xml artemis-%%PORTVERSION%%/artemis_sqlmap/Db.xml artemis-%%PORTVERSION%%/artemis_sqlmap/DbXRef.xml artemis-%%PORTVERSION%%/artemis_sqlmap/Feature.xml artemis-%%PORTVERSION%%/artemis_sqlmap/FeatureCvTerm.xml artemis-%%PORTVERSION%%/artemis_sqlmap/FeatureCvTermDbXRef.xml artemis-%%PORTVERSION%%/artemis_sqlmap/FeatureCvTermProp.xml artemis-%%PORTVERSION%%/artemis_sqlmap/FeatureCvTermPub.xml artemis-%%PORTVERSION%%/artemis_sqlmap/FeatureDbXRef.xml artemis-%%PORTVERSION%%/artemis_sqlmap/FeatureLoc.xml artemis-%%PORTVERSION%%/artemis_sqlmap/FeatureProp.xml artemis-%%PORTVERSION%%/artemis_sqlmap/FeatureRelationship.xml artemis-%%PORTVERSION%%/artemis_sqlmap/Organism.xml artemis-%%PORTVERSION%%/artemis_sqlmap/Pub.xml artemis-%%PORTVERSION%%/artemis_sqlmap/Synonym.xml artemis-%%PORTVERSION%%/artemis_sqlmap/chado_iBatis_config.properties artemis-%%PORTVERSION%%/artemis_sqlmap/chado_iBatis_config.xml artemis-%%PORTVERSION%%/etc/af063097.embl artemis-%%PORTVERSION%%/etc/af063097.fasta artemis-%%PORTVERSION%%/etc/af063097_v_b132222.crunch artemis-%%PORTVERSION%%/etc/b132222.embl artemis-%%PORTVERSION%%/etc/b132222.fasta artemis-%%PORTVERSION%%/etc/c1215.blastn.crunch artemis-%%PORTVERSION%%/etc/c1215.blastn.tab artemis-%%PORTVERSION%%/etc/c1215.embl artemis-%%PORTVERSION%%/etc/c1215.genbank artemis-%%PORTVERSION%%/etc/c1215.seq artemis-%%PORTVERSION%%/etc/feature_keys artemis-%%PORTVERSION%%/etc/feature_keys_gff artemis-%%PORTVERSION%%/etc/go_associations.pl artemis-%%PORTVERSION%%/etc/log4j.properties artemis-%%PORTVERSION%%/etc/options artemis-%%PORTVERSION%%/etc/pombe.usage artemis-%%PORTVERSION%%/etc/qualifier_types artemis-%%PORTVERSION%%/etc/qualifier_types_gff artemis-%%PORTVERSION%%/etc/results_to_netscape artemis-%%PORTVERSION%%/etc/run_blastn artemis-%%PORTVERSION%%/etc/run_blastn.sanger artemis-%%PORTVERSION%%/etc/run_blastp artemis-%%PORTVERSION%%/etc/run_blastp.sanger artemis-%%PORTVERSION%%/etc/run_blastx artemis-%%PORTVERSION%%/etc/run_blastx.sanger artemis-%%PORTVERSION%%/etc/run_clustalx artemis-%%PORTVERSION%%/etc/run_clustalx.sanger artemis-%%PORTVERSION%%/etc/run_fasta artemis-%%PORTVERSION%%/etc/run_fasta.sanger artemis-%%PORTVERSION%%/etc/run_fastx artemis-%%PORTVERSION%%/etc/run_fastx.sanger artemis-%%PORTVERSION%%/etc/run_hth artemis-%%PORTVERSION%%/etc/run_jalview artemis-%%PORTVERSION%%/etc/run_pepstats artemis-%%PORTVERSION%%/etc/run_sigcleave artemis-%%PORTVERSION%%/etc/run_smart artemis-%%PORTVERSION%%/etc/run_tblastn artemis-%%PORTVERSION%%/etc/run_tblastx artemis-%%PORTVERSION%%/images/helix.gif artemis-%%PORTVERSION%%/images/icon.gif artemis-%%PORTVERSION%%/images/sanger-centre.gif artemis-%%PORTVERSION%%/lib/LICENSE.Apache artemis-%%PORTVERSION%%/lib/LICENSE.JDBC artemis-%%PORTVERSION%%/lib/README artemis-%%PORTVERSION%%/lib/biojava.jar artemis-%%PORTVERSION%%/lib/chado-14-interface.jar artemis-%%PORTVERSION%%/lib/ibatis/README artemis-%%PORTVERSION%%/lib/ibatis/cglib-nodep-2.2_beta1.jar artemis-%%PORTVERSION%%/lib/ibatis/ibatis-2.3.0.677.jar artemis-%%PORTVERSION%%/lib/ibatis/license.txt artemis-%%PORTVERSION%%/lib/ibatis/log4j-1.2.14.jar artemis-%%PORTVERSION%%/lib/j2ssh/COMMONS.LICENSE artemis-%%PORTVERSION%%/lib/j2ssh/J2SSH.LICENSE artemis-%%PORTVERSION%%/lib/j2ssh/README artemis-%%PORTVERSION%%/lib/j2ssh/commons-logging.jar artemis-%%PORTVERSION%%/lib/j2ssh/j2ssh-artemis-plugin.jar artemis-%%PORTVERSION%%/lib/j2ssh/j2ssh-core.jar artemis-%%PORTVERSION%%/lib/j2ssh/j2ssh.properties artemis-%%PORTVERSION%%/lib/jakarta-regexp-1.2.jar artemis-%%PORTVERSION%%/lib/jemAlign.jar artemis-%%PORTVERSION%%/lib/jobcontrol.jar artemis-%%PORTVERSION%%/lib/macos.jar artemis-%%PORTVERSION%%/lib/postgresql-8.1-407.jdbc2ee.jar artemis-%%PORTVERSION%%/lib/retrotranslator-runtime-1.1.0.jar artemis-%%PORTVERSION%%/nsdb/CommitFailed.class artemis-%%PORTVERSION%%/nsdb/CommitFailed.java artemis-%%PORTVERSION%%/nsdb/CommitFailedHelper.class artemis-%%PORTVERSION%%/nsdb/CommitFailedHelper.java artemis-%%PORTVERSION%%/nsdb/CommitFailedHolder.java artemis-%%PORTVERSION%%/nsdb/Datestamp.class artemis-%%PORTVERSION%%/nsdb/Datestamp.java artemis-%%PORTVERSION%%/nsdb/DatestampHelper.class artemis-%%PORTVERSION%%/nsdb/DatestampHelper.java artemis-%%PORTVERSION%%/nsdb/DatestampHolder.java artemis-%%PORTVERSION%%/nsdb/Embl.class artemis-%%PORTVERSION%%/nsdb/Embl.java artemis-%%PORTVERSION%%/nsdb/EmblHelper.class artemis-%%PORTVERSION%%/nsdb/EmblHelper.java artemis-%%PORTVERSION%%/nsdb/EmblHolder.java artemis-%%PORTVERSION%%/nsdb/EmblOperations.class artemis-%%PORTVERSION%%/nsdb/EmblOperations.java artemis-%%PORTVERSION%%/nsdb/EmblPackage/Superceded.class artemis-%%PORTVERSION%%/nsdb/EmblPackage/Superceded.java artemis-%%PORTVERSION%%/nsdb/EmblPackage/SupercededHelper.class artemis-%%PORTVERSION%%/nsdb/EmblPackage/SupercededHelper.java artemis-%%PORTVERSION%%/nsdb/EmblPackage/SupercededHolder.java artemis-%%PORTVERSION%%/nsdb/EmblSeq.class artemis-%%PORTVERSION%%/nsdb/EmblSeq.java artemis-%%PORTVERSION%%/nsdb/EmblSeqHelper.class artemis-%%PORTVERSION%%/nsdb/EmblSeqHelper.java artemis-%%PORTVERSION%%/nsdb/EmblSeqHolder.java artemis-%%PORTVERSION%%/nsdb/EmblSeqOperations.class artemis-%%PORTVERSION%%/nsdb/EmblSeqOperations.java artemis-%%PORTVERSION%%/nsdb/EmblSeqWriter.class artemis-%%PORTVERSION%%/nsdb/EmblSeqWriter.java artemis-%%PORTVERSION%%/nsdb/EmblSeqWriterHelper.class artemis-%%PORTVERSION%%/nsdb/EmblSeqWriterHelper.java artemis-%%PORTVERSION%%/nsdb/EmblSeqWriterHolder.java artemis-%%PORTVERSION%%/nsdb/EmblSeqWriterOperations.class artemis-%%PORTVERSION%%/nsdb/EmblSeqWriterOperations.java artemis-%%PORTVERSION%%/nsdb/EmblWriter.class artemis-%%PORTVERSION%%/nsdb/EmblWriter.java artemis-%%PORTVERSION%%/nsdb/EmblWriterHelper.class artemis-%%PORTVERSION%%/nsdb/EmblWriterHelper.java artemis-%%PORTVERSION%%/nsdb/EmblWriterHolder.java artemis-%%PORTVERSION%%/nsdb/EmblWriterOperations.class artemis-%%PORTVERSION%%/nsdb/EmblWriterOperations.java artemis-%%PORTVERSION%%/nsdb/EntryInfo.class artemis-%%PORTVERSION%%/nsdb/EntryInfo.java artemis-%%PORTVERSION%%/nsdb/EntryInfoHelper.java artemis-%%PORTVERSION%%/nsdb/EntryInfoHolder.java artemis-%%PORTVERSION%%/nsdb/EntryInfoListHelper.java artemis-%%PORTVERSION%%/nsdb/EntryInfoListHolder.java artemis-%%PORTVERSION%%/nsdb/EntryInfoOperations.class artemis-%%PORTVERSION%%/nsdb/EntryInfoOperations.java artemis-%%PORTVERSION%%/nsdb/EntryStats.class artemis-%%PORTVERSION%%/nsdb/EntryStats.java artemis-%%PORTVERSION%%/nsdb/EntryStatsHelper.class artemis-%%PORTVERSION%%/nsdb/EntryStatsHelper.java artemis-%%PORTVERSION%%/nsdb/EntryStatsHolder.java artemis-%%PORTVERSION%%/nsdb/FeatureLocation.class artemis-%%PORTVERSION%%/nsdb/FeatureLocation.java artemis-%%PORTVERSION%%/nsdb/FeatureLocationHelper.class artemis-%%PORTVERSION%%/nsdb/FeatureLocationHelper.java artemis-%%PORTVERSION%%/nsdb/FeatureLocationHolder.java artemis-%%PORTVERSION%%/nsdb/FeatureLocationListHelper.java artemis-%%PORTVERSION%%/nsdb/FeatureLocationListHolder.java artemis-%%PORTVERSION%%/nsdb/FeatureLocationOperations.class artemis-%%PORTVERSION%%/nsdb/FeatureLocationOperations.java artemis-%%PORTVERSION%%/nsdb/InexactLocation.class artemis-%%PORTVERSION%%/nsdb/InexactLocation.java artemis-%%PORTVERSION%%/nsdb/InexactLocationHelper.class artemis-%%PORTVERSION%%/nsdb/InexactLocationHelper.java artemis-%%PORTVERSION%%/nsdb/InexactLocationHolder.java artemis-%%PORTVERSION%%/nsdb/InvalidKey.class artemis-%%PORTVERSION%%/nsdb/InvalidKey.java artemis-%%PORTVERSION%%/nsdb/InvalidKeyHelper.class artemis-%%PORTVERSION%%/nsdb/InvalidKeyHelper.java artemis-%%PORTVERSION%%/nsdb/InvalidKeyHolder.java artemis-%%PORTVERSION%%/nsdb/InvalidQualifier.class artemis-%%PORTVERSION%%/nsdb/InvalidQualifier.java artemis-%%PORTVERSION%%/nsdb/InvalidQualifierHelper.class artemis-%%PORTVERSION%%/nsdb/InvalidQualifierHelper.java artemis-%%PORTVERSION%%/nsdb/InvalidQualifierHolder.java artemis-%%PORTVERSION%%/nsdb/Location.class artemis-%%PORTVERSION%%/nsdb/Location.java artemis-%%PORTVERSION%%/nsdb/LocationHelper.class artemis-%%PORTVERSION%%/nsdb/LocationHelper.java artemis-%%PORTVERSION%%/nsdb/LocationHolder.java artemis-%%PORTVERSION%%/nsdb/LocationListHelper.java artemis-%%PORTVERSION%%/nsdb/LocationListHolder.java artemis-%%PORTVERSION%%/nsdb/LocationOperations.class artemis-%%PORTVERSION%%/nsdb/LocationOperations.java artemis-%%PORTVERSION%%/nsdb/LocationPackage/IdListHelper.class artemis-%%PORTVERSION%%/nsdb/LocationPackage/IdListHelper.java artemis-%%PORTVERSION%%/nsdb/LocationPackage/IdListHolder.java artemis-%%PORTVERSION%%/nsdb/LocationPackage/LocGapHelper.class artemis-%%PORTVERSION%%/nsdb/LocationPackage/LocGapHelper.java artemis-%%PORTVERSION%%/nsdb/LocationPackage/LocNodeTypeCodeHelper.class artemis-%%PORTVERSION%%/nsdb/LocationPackage/LocNodeTypeCodeHelper.java artemis-%%PORTVERSION%%/nsdb/LocationPackage/LocOperator.class artemis-%%PORTVERSION%%/nsdb/LocationPackage/LocOperator.java artemis-%%PORTVERSION%%/nsdb/LocationPackage/LocOperatorHelper.class artemis-%%PORTVERSION%%/nsdb/LocationPackage/LocOperatorHelper.java artemis-%%PORTVERSION%%/nsdb/LocationPackage/LocOperatorHolder.java artemis-%%PORTVERSION%%/nsdb/LocationPackage/LocPhysicalSegmentHelper.class artemis-%%PORTVERSION%%/nsdb/LocationPackage/LocPhysicalSegmentHelper.java artemis-%%PORTVERSION%%/nsdb/LocationPackage/LocVirtualSegment.class artemis-%%PORTVERSION%%/nsdb/LocationPackage/LocVirtualSegment.java artemis-%%PORTVERSION%%/nsdb/LocationPackage/LocVirtualSegmentHelper.class artemis-%%PORTVERSION%%/nsdb/LocationPackage/LocVirtualSegmentHelper.java artemis-%%PORTVERSION%%/nsdb/LocationPackage/LocVirtualSegmentHolder.java artemis-%%PORTVERSION%%/nsdb/LocationPackage/LocationNodeListHelper.class artemis-%%PORTVERSION%%/nsdb/LocationPackage/LocationNodeListHelper.java artemis-%%PORTVERSION%%/nsdb/LocationPackage/LocationNodeListHolder.java artemis-%%PORTVERSION%%/nsdb/LocationPackage/LocationNode_u.class artemis-%%PORTVERSION%%/nsdb/LocationPackage/LocationNode_u.java artemis-%%PORTVERSION%%/nsdb/LocationPackage/LocationNode_uHelper.class artemis-%%PORTVERSION%%/nsdb/LocationPackage/LocationNode_uHelper.java artemis-%%PORTVERSION%%/nsdb/LocationPackage/LocationNode_uHolder.java artemis-%%PORTVERSION%%/nsdb/LocationParse.class artemis-%%PORTVERSION%%/nsdb/LocationParse.java artemis-%%PORTVERSION%%/nsdb/LocationParseHelper.class artemis-%%PORTVERSION%%/nsdb/LocationParseHelper.java artemis-%%PORTVERSION%%/nsdb/LocationParseHolder.java artemis-%%PORTVERSION%%/nsdb/NucFeature.class artemis-%%PORTVERSION%%/nsdb/NucFeature.java artemis-%%PORTVERSION%%/nsdb/NucFeatureHelper.class artemis-%%PORTVERSION%%/nsdb/NucFeatureHelper.java artemis-%%PORTVERSION%%/nsdb/NucFeatureHolder.java artemis-%%PORTVERSION%%/nsdb/NucFeatureListHelper.class artemis-%%PORTVERSION%%/nsdb/NucFeatureListHelper.java artemis-%%PORTVERSION%%/nsdb/NucFeatureListHolder.java artemis-%%PORTVERSION%%/nsdb/NucFeatureOperations.class artemis-%%PORTVERSION%%/nsdb/NucFeatureOperations.java artemis-%%PORTVERSION%%/nsdb/NucFeaturePackage/Qualifier.class artemis-%%PORTVERSION%%/nsdb/NucFeaturePackage/Qualifier.java artemis-%%PORTVERSION%%/nsdb/NucFeaturePackage/QualifierHelper.class artemis-%%PORTVERSION%%/nsdb/NucFeaturePackage/QualifierHelper.java artemis-%%PORTVERSION%%/nsdb/NucFeaturePackage/QualifierHolder.java artemis-%%PORTVERSION%%/nsdb/NucFeaturePackage/QualifierListHelper.class artemis-%%PORTVERSION%%/nsdb/NucFeaturePackage/QualifierListHelper.java artemis-%%PORTVERSION%%/nsdb/NucFeaturePackage/QualifierListHolder.java artemis-%%PORTVERSION%%/nsdb/NucFeaturePackage/QualifierTypeCodeHelper.class artemis-%%PORTVERSION%%/nsdb/NucFeaturePackage/QualifierTypeCodeHelper.java artemis-%%PORTVERSION%%/nsdb/NucFeaturePackage/QualifierValueListHelper.class artemis-%%PORTVERSION%%/nsdb/NucFeaturePackage/QualifierValueListHelper.java artemis-%%PORTVERSION%%/nsdb/NucFeaturePackage/QualifierValueListHolder.java artemis-%%PORTVERSION%%/nsdb/NucFeaturePackage/QualifierValue_u.class artemis-%%PORTVERSION%%/nsdb/NucFeaturePackage/QualifierValue_u.java artemis-%%PORTVERSION%%/nsdb/NucFeaturePackage/QualifierValue_uHelper.class artemis-%%PORTVERSION%%/nsdb/NucFeaturePackage/QualifierValue_uHelper.java artemis-%%PORTVERSION%%/nsdb/NucFeaturePackage/QualifierValue_uHolder.java artemis-%%PORTVERSION%%/nsdb/NucFeatureWriter.class artemis-%%PORTVERSION%%/nsdb/NucFeatureWriter.java artemis-%%PORTVERSION%%/nsdb/NucFeatureWriterHelper.class artemis-%%PORTVERSION%%/nsdb/NucFeatureWriterHelper.java artemis-%%PORTVERSION%%/nsdb/NucFeatureWriterHolder.java artemis-%%PORTVERSION%%/nsdb/NucFeatureWriterListHelper.java artemis-%%PORTVERSION%%/nsdb/NucFeatureWriterListHolder.java artemis-%%PORTVERSION%%/nsdb/NucFeatureWriterOperations.class artemis-%%PORTVERSION%%/nsdb/NucFeatureWriterOperations.java artemis-%%PORTVERSION%%/nsdb/NucSeq.class artemis-%%PORTVERSION%%/nsdb/NucSeq.java artemis-%%PORTVERSION%%/nsdb/NucSeqHelper.java artemis-%%PORTVERSION%%/nsdb/NucSeqHolder.java artemis-%%PORTVERSION%%/nsdb/NucSeqListHelper.java artemis-%%PORTVERSION%%/nsdb/NucSeqListHolder.java artemis-%%PORTVERSION%%/nsdb/NucSeqOperations.class artemis-%%PORTVERSION%%/nsdb/NucSeqOperations.java artemis-%%PORTVERSION%%/nsdb/OutOfDate.class artemis-%%PORTVERSION%%/nsdb/OutOfDate.java artemis-%%PORTVERSION%%/nsdb/OutOfDateHelper.class artemis-%%PORTVERSION%%/nsdb/OutOfDateHelper.java artemis-%%PORTVERSION%%/nsdb/OutOfDateHolder.java artemis-%%PORTVERSION%%/nsdb/QualifierParse.class artemis-%%PORTVERSION%%/nsdb/QualifierParse.java artemis-%%PORTVERSION%%/nsdb/QualifierParseHelper.class artemis-%%PORTVERSION%%/nsdb/QualifierParseHelper.java artemis-%%PORTVERSION%%/nsdb/QualifierParseHolder.java artemis-%%PORTVERSION%%/nsdb/ReadOnlyException.class artemis-%%PORTVERSION%%/nsdb/ReadOnlyException.java artemis-%%PORTVERSION%%/nsdb/ReadOnlyExceptionHelper.class artemis-%%PORTVERSION%%/nsdb/ReadOnlyExceptionHelper.java artemis-%%PORTVERSION%%/nsdb/ReadOnlyExceptionHolder.java artemis-%%PORTVERSION%%/nsdb/ServerInfo.class artemis-%%PORTVERSION%%/nsdb/ServerInfo.java artemis-%%PORTVERSION%%/nsdb/ServerInfoHelper.class artemis-%%PORTVERSION%%/nsdb/ServerInfoHelper.java artemis-%%PORTVERSION%%/nsdb/ServerInfoHolder.java artemis-%%PORTVERSION%%/nsdb/_EmblSeqStub.class artemis-%%PORTVERSION%%/nsdb/_EmblSeqStub.java artemis-%%PORTVERSION%%/nsdb/_EmblSeqWriterStub.class artemis-%%PORTVERSION%%/nsdb/_EmblSeqWriterStub.java artemis-%%PORTVERSION%%/nsdb/_EmblStub.class artemis-%%PORTVERSION%%/nsdb/_EmblStub.java artemis-%%PORTVERSION%%/nsdb/_EmblWriterStub.class artemis-%%PORTVERSION%%/nsdb/_EmblWriterStub.java artemis-%%PORTVERSION%%/nsdb/_EntryInfoStub.java artemis-%%PORTVERSION%%/nsdb/_FeatureLocationStub.class artemis-%%PORTVERSION%%/nsdb/_FeatureLocationStub.java artemis-%%PORTVERSION%%/nsdb/_LocationStub.class artemis-%%PORTVERSION%%/nsdb/_LocationStub.java artemis-%%PORTVERSION%%/nsdb/_NucFeatureStub.class artemis-%%PORTVERSION%%/nsdb/_NucFeatureStub.java artemis-%%PORTVERSION%%/nsdb/_NucFeatureWriterStub.class artemis-%%PORTVERSION%%/nsdb/_NucFeatureWriterStub.java artemis-%%PORTVERSION%%/nsdb/_NucSeqStub.java artemis-%%PORTVERSION%%/nsdb/datestamp_tHelper.class artemis-%%PORTVERSION%%/nsdb/datestamp_tHelper.java artemis-%%PORTVERSION%%/seqdb/BioSeq.class artemis-%%PORTVERSION%%/seqdb/BioSeq.java artemis-%%PORTVERSION%%/seqdb/BioSeqHelper.java artemis-%%PORTVERSION%%/seqdb/BioSeqHolder.java artemis-%%PORTVERSION%%/seqdb/BioSeqOperations.class artemis-%%PORTVERSION%%/seqdb/BioSeqOperations.java artemis-%%PORTVERSION%%/seqdb/Feature.class artemis-%%PORTVERSION%%/seqdb/Feature.java artemis-%%PORTVERSION%%/seqdb/FeatureHelper.java artemis-%%PORTVERSION%%/seqdb/FeatureHolder.java artemis-%%PORTVERSION%%/seqdb/FeatureOperations.class artemis-%%PORTVERSION%%/seqdb/FeatureOperations.java artemis-%%PORTVERSION%%/seqdb/SeqInfo.class artemis-%%PORTVERSION%%/seqdb/SeqInfo.java artemis-%%PORTVERSION%%/seqdb/SeqInfoHelper.java artemis-%%PORTVERSION%%/seqdb/SeqInfoHolder.java artemis-%%PORTVERSION%%/seqdb/SeqInfoOperations.class artemis-%%PORTVERSION%%/seqdb/SeqInfoOperations.java artemis-%%PORTVERSION%%/seqdb/_BioSeqStub.java artemis-%%PORTVERSION%%/seqdb/_FeatureStub.java artemis-%%PORTVERSION%%/seqdb/_SeqInfoStub.java artemis-%%PORTVERSION%%/type/AminoAcid.class artemis-%%PORTVERSION%%/type/AminoAcid.java artemis-%%PORTVERSION%%/type/AminoAcidHelper.class artemis-%%PORTVERSION%%/type/AminoAcidHelper.java artemis-%%PORTVERSION%%/type/AminoAcidHolder.java artemis-%%PORTVERSION%%/type/AminoAcidListHelper.java artemis-%%PORTVERSION%%/type/AminoAcidListHolder.java artemis-%%PORTVERSION%%/type/AntiCodon.class artemis-%%PORTVERSION%%/type/AntiCodon.java artemis-%%PORTVERSION%%/type/AntiCodonHelper.class artemis-%%PORTVERSION%%/type/AntiCodonHelper.java artemis-%%PORTVERSION%%/type/AntiCodonHolder.java artemis-%%PORTVERSION%%/type/AntiCodonListHelper.java artemis-%%PORTVERSION%%/type/AntiCodonListHolder.java artemis-%%PORTVERSION%%/type/Between_ftc.java artemis-%%PORTVERSION%%/type/CodonTranslation.class artemis-%%PORTVERSION%%/type/CodonTranslation.java artemis-%%PORTVERSION%%/type/CodonTranslationHelper.class artemis-%%PORTVERSION%%/type/CodonTranslationHelper.java artemis-%%PORTVERSION%%/type/CodonTranslationHolder.java artemis-%%PORTVERSION%%/type/CodonTranslationListHelper.java artemis-%%PORTVERSION%%/type/CodonTranslationListHolder.java artemis-%%PORTVERSION%%/type/Date.class artemis-%%PORTVERSION%%/type/Date.java artemis-%%PORTVERSION%%/type/DateHelper.class artemis-%%PORTVERSION%%/type/DateHelper.java artemis-%%PORTVERSION%%/type/DateHolder.java artemis-%%PORTVERSION%%/type/DateListHelper.java artemis-%%PORTVERSION%%/type/DateListHolder.java artemis-%%PORTVERSION%%/type/DbXref.class artemis-%%PORTVERSION%%/type/DbXref.java artemis-%%PORTVERSION%%/type/DbXrefHelper.class artemis-%%PORTVERSION%%/type/DbXrefHelper.java artemis-%%PORTVERSION%%/type/DbXrefHolder.java artemis-%%PORTVERSION%%/type/DbXrefListHelper.class artemis-%%PORTVERSION%%/type/DbXrefListHelper.java artemis-%%PORTVERSION%%/type/DbXrefListHolder.java artemis-%%PORTVERSION%%/type/Exact_ftc.java artemis-%%PORTVERSION%%/type/Fuzzy.class artemis-%%PORTVERSION%%/type/Fuzzy.java artemis-%%PORTVERSION%%/type/FuzzyHelper.class artemis-%%PORTVERSION%%/type/FuzzyHelper.java artemis-%%PORTVERSION%%/type/FuzzyHolder.java artemis-%%PORTVERSION%%/type/FuzzyListHelper.java artemis-%%PORTVERSION%%/type/FuzzyListHolder.java artemis-%%PORTVERSION%%/type/FuzzyTypeCodeHelper.class artemis-%%PORTVERSION%%/type/FuzzyTypeCodeHelper.java artemis-%%PORTVERSION%%/type/Greater_ftc.java artemis-%%PORTVERSION%%/type/In_ftc.java artemis-%%PORTVERSION%%/type/IndexOutOfRange.class artemis-%%PORTVERSION%%/type/IndexOutOfRange.java artemis-%%PORTVERSION%%/type/IndexOutOfRangeHelper.class artemis-%%PORTVERSION%%/type/IndexOutOfRangeHelper.java artemis-%%PORTVERSION%%/type/IndexOutOfRangeHolder.java artemis-%%PORTVERSION%%/type/InvalidArgumentValue.class artemis-%%PORTVERSION%%/type/InvalidArgumentValue.java artemis-%%PORTVERSION%%/type/InvalidArgumentValueHelper.class artemis-%%PORTVERSION%%/type/InvalidArgumentValueHelper.java artemis-%%PORTVERSION%%/type/InvalidArgumentValueHolder.java artemis-%%PORTVERSION%%/type/InvalidRelation.class artemis-%%PORTVERSION%%/type/InvalidRelation.java artemis-%%PORTVERSION%%/type/InvalidRelationHelper.class artemis-%%PORTVERSION%%/type/InvalidRelationHelper.java artemis-%%PORTVERSION%%/type/InvalidRelationHolder.java artemis-%%PORTVERSION%%/type/Less_ftc.java artemis-%%PORTVERSION%%/type/NoResult.class artemis-%%PORTVERSION%%/type/NoResult.java artemis-%%PORTVERSION%%/type/NoResultHelper.class artemis-%%PORTVERSION%%/type/NoResultHelper.java artemis-%%PORTVERSION%%/type/NoResultHolder.java artemis-%%PORTVERSION%%/type/NoWritePermission.java artemis-%%PORTVERSION%%/type/NoWritePermissionHelper.java artemis-%%PORTVERSION%%/type/NoWritePermissionHolder.java artemis-%%PORTVERSION%%/type/ParseError.java artemis-%%PORTVERSION%%/type/ParseErrorHelper.java artemis-%%PORTVERSION%%/type/ParseErrorHolder.java artemis-%%PORTVERSION%%/type/Person.java artemis-%%PORTVERSION%%/type/PersonHelper.java artemis-%%PORTVERSION%%/type/PersonHolder.java artemis-%%PORTVERSION%%/type/PersonListHelper.java artemis-%%PORTVERSION%%/type/PersonListHolder.java artemis-%%PORTVERSION%%/type/RepeatUnit.class artemis-%%PORTVERSION%%/type/RepeatUnit.java artemis-%%PORTVERSION%%/type/RepeatUnitHelper.class artemis-%%PORTVERSION%%/type/RepeatUnitHelper.java artemis-%%PORTVERSION%%/type/RepeatUnitHolder.java artemis-%%PORTVERSION%%/type/RepeatUnitListHelper.java artemis-%%PORTVERSION%%/type/RepeatUnitListHolder.java artemis-%%PORTVERSION%%/type/Revision.class artemis-%%PORTVERSION%%/type/Revision.java artemis-%%PORTVERSION%%/type/RevisionHelper.class artemis-%%PORTVERSION%%/type/RevisionHelper.java artemis-%%PORTVERSION%%/type/RevisionHolder.java artemis-%%PORTVERSION%%/type/RevisionListHelper.class artemis-%%PORTVERSION%%/type/RevisionListHelper.java artemis-%%PORTVERSION%%/type/RevisionListHolder.java artemis-%%PORTVERSION%%/type/SpliceConsensus.class artemis-%%PORTVERSION%%/type/SpliceConsensus.java artemis-%%PORTVERSION%%/type/SpliceConsensusHelper.class artemis-%%PORTVERSION%%/type/SpliceConsensusHelper.java artemis-%%PORTVERSION%%/type/SpliceConsensusHolder.java artemis-%%PORTVERSION%%/type/SpliceConsensusListHelper.java artemis-%%PORTVERSION%%/type/SpliceConsensusListHolder.java artemis-%%PORTVERSION%%/type/TranslationException.class artemis-%%PORTVERSION%%/type/TranslationException.java artemis-%%PORTVERSION%%/type/TranslationExceptionHelper.class artemis-%%PORTVERSION%%/type/TranslationExceptionHelper.java artemis-%%PORTVERSION%%/type/TranslationExceptionHolder.java artemis-%%PORTVERSION%%/type/TranslationExceptionListHelper.java artemis-%%PORTVERSION%%/type/TranslationExceptionListHolder.java artemis-%%PORTVERSION%%/type/longListHelper.java artemis-%%PORTVERSION%%/type/longListHolder.java artemis-%%PORTVERSION%%/type/stringListHelper.class artemis-%%PORTVERSION%%/type/stringListHelper.java artemis-%%PORTVERSION%%/type/stringListHolder.java artemis-%%PORTVERSION%%/type/ulongListHelper.java artemis-%%PORTVERSION%%/type/ulongListHolder.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/.project artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/Action.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/Action.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/ActionController.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/ActionController.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/ActionVector.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/ActionVector.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/AlignMatch.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/AlignMatch.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/AlignMatchVector.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/AlignMatchVector.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/AlignmentSelectionChangeEvent.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/AlignmentSelectionChangeEvent.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/AlignmentSelectionChangeListener.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/AlignmentSelectionChangeListener.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/BlastM8ComparisonData.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/BlastM8ComparisonData.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/ChangeEvent.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/ChangeEvent.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/ChangeEventVector.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/ChangeEventVector.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/ChangeListener.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/ChangeListener.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/ClipBoard.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/ComparisonData.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/ComparisonData.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/ComparisonDataFactory.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/ComparisonDataFactory.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/ComparisonDataParseException.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/ComparisonDataParseException.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/Entry$FeatureEnumerator.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/Entry.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/Entry.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/EntryChangeEvent.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/EntryChangeEvent.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/EntryChangeListener.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/EntryChangeListener.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/EntryGroup.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/EntryGroup.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/EntryGroupChangeEvent.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/EntryGroupChangeEvent.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/EntryGroupChangeListener.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/EntryGroupChangeListener.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/EntrySource.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/EntrySource.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/EntrySourceVector.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/EntrySourceVector.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/EntryVector.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/EntryVector.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/ExternalProgram$1.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/ExternalProgram.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/ExternalProgram.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/ExternalProgramEvent.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/ExternalProgramEvent.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/ExternalProgramException.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/ExternalProgramException.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/ExternalProgramListener.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/ExternalProgramListener.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/ExternalProgramMonitor.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/ExternalProgramMonitor.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/ExternalProgramThread.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/ExternalProgramUtils.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/ExternalProgramVector.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/ExternalProgramVector.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/Feature.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/Feature.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/FeatureChangeEvent.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/FeatureChangeEvent.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/FeatureChangeListener.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/FeatureChangeListener.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/FeatureEnumeration.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/FeatureEnumeration.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/FeatureFromVectorPredicate.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/FeatureFromVectorPredicate.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/FeatureKeyPredicate.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/FeatureKeyPredicate.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/FeatureKeyQualifierPredicate.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/FeatureKeyQualifierPredicate.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/FeaturePatternPredicate.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/FeaturePatternPredicate.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/FeaturePredicate.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/FeaturePredicate.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/FeaturePredicateConjunction.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/FeaturePredicateConjunction.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/FeaturePredicateVector.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/FeaturePredicateVector.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/FeatureSegment.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/FeatureSegment.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/FeatureSegmentVector.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/FeatureSegmentVector.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/FeatureVector.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/FeatureVector.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/FilteredEntryGroup$1.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/FilteredEntryGroup$2.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/FilteredEntryGroup$3.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/FilteredEntryGroup$FeatureEnumerator.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/FilteredEntryGroup.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/FilteredEntryGroup.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/GotoEvent.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/GotoEvent.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/GotoEventSource.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/GotoEventSource.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/GotoListener.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/GotoListener.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/LastSegmentException.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/LastSegmentException.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/Logger.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/Logger.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/MSPcrunchComparisonData.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/MSPcrunchComparisonData.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/MUMmerComparisonData.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/MegaBlastComparisonData.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/MegaBlastComparisonData.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/OptionChangeEvent.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/OptionChangeEvent.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/OptionChangeListener.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/OptionChangeListener.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/Options.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/Options.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/ProcessMonitor.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/ProcessMonitor.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/SSAHAComparisonData.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/SSAHAComparisonData.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/Selectable.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/Selectable.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/Selection.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/Selection.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/SelectionChangeEvent.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/SelectionChangeEvent.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/SelectionChangeListener.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/SelectionChangeListener.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/SimpleComparisonData.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/SimpleComparisonData.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/SimpleEntryGroup$FeatureEnumerator.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/SimpleEntryGroup.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/SimpleEntryGroup.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/SimpleExternalProgramMonitor.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/SimpleExternalProgramMonitor.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/SimpleGotoEventSource.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/SimpleGotoEventSource.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/TaskMonitor.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/TaskMonitor.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/chado/ArtemisUtils.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/chado/ArtemisUtils.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/chado/ChadoDAO.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/chado/ChadoDemo.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/chado/ChadoTransaction.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/chado/ChadoTransaction.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/chado/ChadoTransactionManager.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/chado/ChadoTransactionManager.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/chado/DbSqlConfig.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/chado/DbSqlConfig.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/chado/FeatureForUpdatingResidues.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/chado/FeatureForUpdatingResidues.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/chado/GmodDAO.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/chado/GmodDAO.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/chado/IBatisDAO.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/chado/IBatisDAO.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/chado/JdbcDAO.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/chado/JdbcDAO.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/chado/Similarity$FeaturePropComparator.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/chado/Similarity.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/chado/Similarity.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/chado/SqlMapClientWrapper.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/chado/SqlMapClientWrapper.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/ActMain$1.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/ActMain$2.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/ActMain$3.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/ActMain$4.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/ActMain.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/ActMain.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AddMenu$1.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AddMenu$10.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AddMenu$11.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AddMenu$12.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AddMenu$13.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AddMenu$14.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AddMenu$15.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AddMenu$16.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AddMenu$17.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AddMenu$18.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AddMenu$19.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AddMenu$2.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AddMenu$20.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AddMenu$21.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AddMenu$3.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AddMenu$4.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AddMenu$5.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AddMenu$6.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AddMenu$7.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AddMenu$8.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AddMenu$9.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AddMenu.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AddMenu.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AlignMatchViewer$1.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AlignMatchViewer$10.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AlignMatchViewer$11.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AlignMatchViewer$12.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AlignMatchViewer$13.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AlignMatchViewer$2.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AlignMatchViewer$3.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AlignMatchViewer$4.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AlignMatchViewer$5.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AlignMatchViewer$6.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AlignMatchViewer$7.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AlignMatchViewer$8.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AlignMatchViewer$9.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AlignMatchViewer.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AlignMatchViewer.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AlignmentEvent.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AlignmentEvent.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AlignmentListener.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AlignmentListener.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AlignmentViewer$1.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AlignmentViewer$10.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AlignmentViewer$11.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AlignmentViewer$12.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AlignmentViewer$13.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AlignmentViewer$14.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AlignmentViewer$15.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AlignmentViewer$16.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AlignmentViewer$17.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AlignmentViewer$18.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AlignmentViewer$19.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AlignmentViewer$2.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AlignmentViewer$20.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AlignmentViewer$21.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AlignmentViewer$3.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AlignmentViewer$4.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AlignmentViewer$5.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AlignmentViewer$6.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AlignmentViewer$7.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AlignmentViewer$8.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AlignmentViewer$9.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AlignmentViewer$AlignMatchComparator.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AlignmentViewer$ColorChooserShades.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AlignmentViewer.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/AlignmentViewer.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/ArtemisCheckboxMenuItem.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/ArtemisMain$1.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/ArtemisMain$2.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/ArtemisMain$3.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/ArtemisMain$4.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/ArtemisMain$5.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/ArtemisMain$6.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/ArtemisMain$7.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/ArtemisMain$8.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/ArtemisMain$9.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/ArtemisMain.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/ArtemisMain.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/BasePlot$1.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/BasePlot.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/BasePlot.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/BasePlotGroup.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/BasePlotGroup.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/BioJavaEntrySource.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/BioJavaEntrySource.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/CanvasPanel.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/CanvasPanel.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/ChoiceFrame$1.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/ChoiceFrame$2.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/ChoiceFrame$3.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/ChoiceFrame.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/ChoiceFrame.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/ComparatorDialog$1.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/ComparatorDialog$2.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/ComparatorDialog$3.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/ComparatorDialog$4.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/ComparatorDialog$5.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/ComparatorDialog.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/ComparatorDialog.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/ComparatorGlue$1.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/ComparatorGlue$2.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/ComparatorGlue$3.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/ComparatorGlue$4.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/ComparatorGlue$5.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/ComparatorGlue.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/ComparatorGlue.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/ContigTool$1.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/ContigTool$2.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/ContigTool$3.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/ContigTool$4.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/ContigTool$PopupListener.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/ContigTool.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/ContigTool.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/CorbaEntrySource.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/CorbaEntrySource.java 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artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/FileList.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/FileManager$1.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/FileManager$2.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/FileManager$3.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/FileManager$4.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/FileManager$5.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/FileManager$6.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/FileManager.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/FileManager.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/FileNode.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/FileNode.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/FileSystemModel$1.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/FileSystemModel.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/FileSystemModel.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/JTreeTable$1.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/JTreeTable$2.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/JTreeTable$3.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/JTreeTable$4.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/JTreeTable$5.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/JTreeTable$6.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/JTreeTable$7.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/JTreeTable$PopupListener.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/JTreeTable$TreeTableCellEditor.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/JTreeTable$TreeTableCellRenderer.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/JTreeTable.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/JTreeTable.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/LocalAndRemoteFileManager$1.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/LocalAndRemoteFileManager$10.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/LocalAndRemoteFileManager$2.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/LocalAndRemoteFileManager$3.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/LocalAndRemoteFileManager$4.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/LocalAndRemoteFileManager$5.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/LocalAndRemoteFileManager$6.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/LocalAndRemoteFileManager$7.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/LocalAndRemoteFileManager$8.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/LocalAndRemoteFileManager$9.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/LocalAndRemoteFileManager$DbConnectionThread.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/LocalAndRemoteFileManager.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/LocalAndRemoteFileManager.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/RemoteFileNode.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/RemoteFileNode.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/SshJTreeTable$1.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/SshJTreeTable$2.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/SshJTreeTable$3.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/SshJTreeTable$4.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/SshJTreeTable$5.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/SshJTreeTable$6.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/SshJTreeTable$7.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/SshJTreeTable$8.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/SshJTreeTable$9.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/SshJTreeTable$PopupListener.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/SshJTreeTable$TreeTableCellEditor.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/SshJTreeTable$TreeTableCellRenderer.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/SshJTreeTable.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/SshJTreeTable.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/TransferableFileNodeList.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/TransferableFileNodeList.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/TreeTableModel.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/TreeTableModel.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/TreeTableModelAdapter$1.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/TreeTableModelAdapter.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree/TreeTableModelAdapter.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/genebuilder/GeneBuilderFrame$1.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/genebuilder/GeneBuilderFrame$2.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/genebuilder/GeneBuilderFrame$3.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/genebuilder/GeneBuilderFrame$4.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/genebuilder/GeneBuilderFrame.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/genebuilder/GeneBuilderFrame.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/genebuilder/GeneComponentTree$GeneTreeSelectionListener.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/genebuilder/GeneComponentTree.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/genebuilder/GeneComponentTree.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/genebuilder/GeneEdit.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/genebuilder/GeneViewerPanel$1.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/genebuilder/GeneViewerPanel$2.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/genebuilder/GeneViewerPanel$3.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/genebuilder/GeneViewerPanel$4.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/genebuilder/GeneViewerPanel$5.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/genebuilder/GeneViewerPanel$6.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/genebuilder/GeneViewerPanel$7.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/genebuilder/GeneViewerPanel$PopupListener.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/genebuilder/GeneViewerPanel.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/genebuilder/GeneViewerPanel.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/genebuilder/cv/CVPanel$1.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/genebuilder/cv/CVPanel$2.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/genebuilder/cv/CVPanel$CVCellRenderer.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/genebuilder/cv/CVPanel.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/genebuilder/cv/CVPanel.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/genebuilder/cv/ControlledCurationBox$1.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/genebuilder/cv/ControlledCurationBox.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/genebuilder/cv/ControlledCurationBox.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/genebuilder/cv/CvBoxA$DateVerifier.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/genebuilder/cv/CvBoxA.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/genebuilder/cv/CvBoxA.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/genebuilder/cv/GoBox$1.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/genebuilder/cv/GoBox.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/genebuilder/cv/GoBox.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/genebuilder/cv/JExtendedComboBox.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/genebuilder/cv/JExtendedComboBox.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/genebuilder/gff/GffPanel.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/genebuilder/gff/GffPanel.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/Annotation$1.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/Annotation$PopupListener.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/Annotation.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/Annotation.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/BigPane$1.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/BigPane$2.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/BigPane$3.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/BigPane$4.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/BigPane$5.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/BigPane$6.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/BigPane$7.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/BigPane$8.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/BigPane$winExit.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/BigPane.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/BigPane.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/BrowserControl.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/BrowserControl.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/CommonMenu$1.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/CommonMenu.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/CommonMenu.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/DBViewer$1.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/DBViewer$2.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/DBViewer$3.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/DBViewer$4.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/DBViewer$5.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/DBViewer$6.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/DBViewer$PopupListener.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/DBViewer.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/DBViewer.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/DataCollectionPane$1.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/DataCollectionPane$2.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/DataCollectionPane$3.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/DataCollectionPane$4.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/DataCollectionPane$5.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/DataCollectionPane$6.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/DataCollectionPane.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/DataCollectionPane.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/DataViewInternalFrame$1.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/DataViewInternalFrame$ActiveJSplitPane.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/DataViewInternalFrame$TabChangeListener.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/DataViewInternalFrame.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/DataViewInternalFrame.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/EvidenceViewer$MouseClickListener.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/EvidenceViewer.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/EvidenceViewer.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/ExternalApplication$StderrHandler.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/ExternalApplication$StdoutHandler.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/ExternalApplication.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/ExternalApplication.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/FastaListener.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/FastaListener.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/FastaTextPane$GetzThread.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/FastaTextPane.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/FastaTextPane.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/HitInfo.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/HitInfo.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/MouseOverButton.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/MouseOverButton.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/MultiLineToolTipUI$1.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/MultiLineToolTipUI$MyToolTip.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/MultiLineToolTipUI.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/MultiLineToolTipUI.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/PlafMacros.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/PlafMacros.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/ScrollPanel.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/ScrollPanel.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/BetweenRange.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/BetweenRange.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/BioJavaEntry.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/BioJavaEntry.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/BioJavaFeature.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/BioJavaFeature.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/BioJavaSequence.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/BioJavaSequence.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/BlastDocumentEntry.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/BlastDocumentEntry.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/BlastEntryInformation.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/BlastEntryInformation.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/BlastStreamFeature.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/BlastStreamFeature.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/ChadoCanonicalGene.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/ChadoCanonicalGene.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/ComparableFeature.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/ComparableFeature.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/CorbaEntry.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/CorbaEntry.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/CorbaFeature.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/CorbaFeature.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/CorbaSequence.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/CorbaSequence.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/DatabaseDocumentEntry.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/DatabaseDocumentEntry.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/DatabaseStreamFeature.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/DatabaseStreamFeature.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/DateStampFeature.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/DateStampFeature.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/DocumentEntry.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/DocumentEntry.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/DocumentEntryAutosaveThread.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/DocumentEntryAutosaveThread.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/DocumentEntryFactory.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/DocumentEntryFactory.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/DocumentFeature.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/DocumentFeature.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/EMBLObject.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/EMBLObject.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/EmblDocumentEntry.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/EmblDocumentEntry.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/EmblMisc.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/EmblMisc.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/EmblStreamFeature.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/EmblStreamFeature.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/EmblStreamSequence.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/EmblStreamSequence.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/Entry.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/Entry.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/EntryInformation.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/EntryInformation.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/EntryInformationException.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/EntryInformationException.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/EntryStreamEvent.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/FastaStreamSequence.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/FastaStreamSequence.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/Feature.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/Feature.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/FeatureComparator.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/FeatureComparator.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/FeatureEnumeration.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/FeatureEnumeration.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/FeatureHeader.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/FeatureHeader.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/FeatureTable.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/FeatureTable.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/FeatureTree$1.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/FeatureTree$FeatureEnumerator.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/FeatureTree.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/FeatureTree.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/FeatureVector.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/FeatureVector.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/FuzzyRange.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/FuzzyRange.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/GFFDocumentEntry.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/GFFDocumentEntry.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/GFFEntryInformation.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/GFFEntryInformation.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/GFFMisc.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/GFFMisc.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/GFFStreamFeature.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/GFFStreamFeature.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/GenbankDocumentEntry.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/GenbankDocumentEntry.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/GenbankMisc.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/GenbankMisc.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/GenbankStreamFeature.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/GenbankStreamFeature.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/GenbankStreamSequence.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/GenbankStreamSequence.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/InvalidKeyException.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/InvalidKeyException.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/InvalidQualifierException.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/InvalidQualifierException.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/InvalidRelationException.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/InvalidRelationException.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/Key.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/Key.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/KeyVector.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/KeyVector.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/LazyQualifierValue.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/LazyQualifierValue.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/LineGroup.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/LineGroup.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/LineGroupVector.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/LineGroupVector.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/Location.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/Location.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/LocationLexer$TokenEnumeration.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/LocationLexer.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/LocationLexer.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/LocationParseException.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/LocationParseException.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/LocationParseNode.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/LocationParseNode.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/LocationParseNodeVector.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/LocationParseNodeVector.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/LowerInteger.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/LowerInteger.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/MSPcrunchDocumentEntry.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/MSPcrunchDocumentEntry.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/MSPcrunchEntryInformation.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/MSPcrunchEntryInformation.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/MSPcrunchStreamFeature.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/MSPcrunchStreamFeature.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/MiscLineGroup.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/MiscLineGroup.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/NucFeatureHasher.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/OutOfDateException.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/OutOfDateException.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/Packing.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/Packing.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/PublicDBDocumentEntry.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/PublicDBDocumentEntry.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/PublicDBStreamFeature.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/PublicDBStreamFeature.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/Qualifier.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/Qualifier.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/QualifierInfo.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/QualifierInfo.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/QualifierInfoException.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/QualifierInfoException.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/QualifierInfoHash.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/QualifierInfoHash.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/QualifierInfoVector.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/QualifierInfoVector.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/QualifierLazyLoading.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/QualifierLazyLoading.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/QualifierParseException.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/QualifierParseException.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/QualifierVector.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/QualifierVector.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/RWCorbaEntry$1.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/RWCorbaEntry.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/RWCorbaEntry.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/RWCorbaFeature.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/RWCorbaFeature.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/Range.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/Range.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/RangeVector.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/RangeVector.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/RawStreamSequence.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/RawStreamSequence.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/ReadEvent.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/ReadEvent.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/ReadFormatException.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/ReadFormatException.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/ReadListener.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/ReadListener.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/ReadOnlyEmblStreamFeature.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/ReadOnlyEntry.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/ReadOnlyEntry.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/Sequence.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/Sequence.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/SimpleDocumentEntry$1.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/SimpleDocumentEntry.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/SimpleDocumentEntry.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/SimpleDocumentFeature.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/SimpleDocumentFeature.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/SimpleEntryInformation.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/SimpleEntryInformation.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/StreamFeature.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/StreamFeature.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/StreamFeatureTable.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/StreamFeatureTable.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/StreamQualifier.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/StreamQualifier.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/StreamSequence.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/StreamSequence.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/StreamSequenceFactory.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/StreamSequenceFactory.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/UpperInteger.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/UpperInteger.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/j2ssh/FTProgress.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/j2ssh/FTProgress.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/j2ssh/FileTransferProgressMonitor.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/j2ssh/FileTransferProgressMonitor.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/j2ssh/SshFileManager$SshGet.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/j2ssh/SshFileManager.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/j2ssh/SshFileManager.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/j2ssh/SshLogin.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/j2ssh/SshLogin.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/j2ssh/SshPSUClient$StdoutStdErrHandler.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/j2ssh/SshPSUClient.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/j2ssh/SshPSUClient.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/AGWindowAlgorithm.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/AGWindowAlgorithm.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/ATDeviationAlgorithm.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/ATDeviationAlgorithm.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/Algorithm.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/Algorithm.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/BaseAlgorithm.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/BaseAlgorithm.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/CSCSAlgorithm.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/CSCSAlgorithm.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/Codon12CorrelationAlgorithm.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/Codon12CorrelationAlgorithm.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/CodonUsageAlgorithm.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/CodonUsageAlgorithm.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/CodonUsageFormatException.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/CodonUsageFormatException.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/CodonUsageWeight.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/CodonUsageWeight.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/CodonWeight.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/CodonWeight.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/CoilFeatureAlgorithm.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/CoilFeatureAlgorithm.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/CumulativeATSkewAlgorithm.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/CumulativeATSkewAlgorithm.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/CumulativeGCSkewAlgorithm.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/CumulativeGCSkewAlgorithm.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/EntropyAlgorithm.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/EntropyAlgorithm.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/FeatureAlgorithm.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/FeatureAlgorithm.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/GCDeviationAlgorithm.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/GCDeviationAlgorithm.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/GCFrameAlgorithm.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/GCFrameAlgorithm.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/GCSDWindowAlgorithm.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/GCSDWindowAlgorithm.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/GCWindowAlgorithm.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/GCWindowAlgorithm.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/HydroAlgorithm.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/HydroAlgorithm.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/HydrophilicityAlgorithm.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/HydrophilicityAlgorithm.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/HydrophobicityAlgorithm.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/HydrophobicityAlgorithm.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/ICDIAlgorithm.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/ICDIAlgorithm.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/KarlinSigAlgorithm.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/KarlinSigAlgorithm.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/MRIAlgorithm.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/MRIAlgorithm.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/NcAlgorithm.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/NcAlgorithm.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/PositionalAsymmetryAlgorithm.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/PositionalAsymmetryAlgorithm.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/ScaledChiAlgorithm.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/ScaledChiAlgorithm.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/UserDataAlgorithm.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/UserDataAlgorithm.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/sequence/AminoAcidSequence.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/sequence/AminoAcidSequence.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/sequence/BasePattern.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/sequence/BasePattern.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/sequence/BasePatternFormatException.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/sequence/BasePatternFormatException.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/sequence/Bases.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/sequence/Bases.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/sequence/Marker.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/sequence/Marker.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/sequence/MarkerChangeEvent.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/sequence/MarkerChangeEvent.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/sequence/MarkerChangeListener.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/sequence/MarkerChangeListener.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/sequence/MarkerInternal.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/sequence/MarkerRange.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/sequence/MarkerRange.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/sequence/MarkerRangeVector.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/sequence/MarkerRangeVector.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/sequence/NoSequenceException.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/sequence/NoSequenceException.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/sequence/SequenceChangeEvent.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/sequence/SequenceChangeEvent.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/sequence/SequenceChangeListener.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/sequence/SequenceChangeListener.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/sequence/Strand.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/sequence/Strand.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/util/ByteBuffer.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/util/ByteBuffer.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/util/DatabaseDocument.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/util/DatabaseDocument.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/util/Document.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/util/Document.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/util/DocumentFactory.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/util/DocumentFactory.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/util/FastVector.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/util/FastVector.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/util/FileDocument.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/util/FileDocument.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/util/InputStreamProgressEvent.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/util/InputStreamProgressEvent.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/util/InputStreamProgressListener.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/util/InputStreamProgressListener.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/util/InputStreamProgressListenerVector.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/util/InputStreamProgressListenerVector.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/util/LinePushBackReader.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/util/LinePushBackReader.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/util/OutOfRangeException.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/util/OutOfRangeException.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/util/ProgressInputStream.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/util/ProgressInputStream.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/util/PushBackException.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/util/PushBackException.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/util/ReadOnlyException.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/util/ReadOnlyException.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/util/RemoteFileDocument$1.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/util/RemoteFileDocument.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/util/RemoteFileDocument.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/util/StringVector$1.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/util/StringVector.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/util/StringVector.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/util/TextDocument.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/util/TextDocument.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/util/URLDocument.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/util/URLDocument.java artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/util/WorkingGZIPInputStream.class artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/util/WorkingGZIPInputStream.java bin/act bin/art -@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/ibatis -@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/util -@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/sequence -@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot -@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/j2ssh -@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io -@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor -@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/genebuilder/gff -@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/genebuilder/cv -@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/genebuilder -@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/filetree -@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/database -@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components -@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/chado -@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/artemis -@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger -@dirrm artemis-%%PORTVERSION%%/uk/ac -@dirrm artemis-%%PORTVERSION%%/uk -@dirrm artemis-%%PORTVERSION%%/type -@dirrm artemis-%%PORTVERSION%%/seqdb -@dirrm artemis-%%PORTVERSION%%/nsdb/NucFeaturePackage -@dirrm artemis-%%PORTVERSION%%/nsdb/LocationPackage -@dirrm artemis-%%PORTVERSION%%/nsdb/EmblPackage -@dirrm artemis-%%PORTVERSION%%/nsdb -@dirrm artemis-%%PORTVERSION%%/lib/j2ssh -@dirrm artemis-%%PORTVERSION%%/lib/ibatis -@dirrm artemis-%%PORTVERSION%%/lib -@dirrm artemis-%%PORTVERSION%%/images -@dirrm artemis-%%PORTVERSION%%/etc -@dirrm artemis-%%PORTVERSION%%/artemis_sqlmap -@dirrm artemis-%%PORTVERSION%% Index: head/biology/biococoa/pkg-plist =================================================================== --- head/biology/biococoa/pkg-plist (revision 371236) +++ head/biology/biococoa/pkg-plist (revision 371237) @@ -1,70 +1,65 @@ GNUstep/Local/Library/Frameworks/BioCocoa.framework/BioCocoa GNUstep/Local/Library/Frameworks/BioCocoa.framework/Headers GNUstep/Local/Library/Frameworks/BioCocoa.framework/Resources GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/BioCocoa GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCAminoAcid.h GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCAnnotation.h GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCAtom.h GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCCachedFastaFile.h GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCCachedSequenceFile.h GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCChain.h GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCCodon.h GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCCodonDNA.h GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCCodonRNA.h GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCDataMatrix.h GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCFoundation.h GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCFoundationDefines.h GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCGeneticCode.h GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCMCP.h GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCNucleotide.h 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-%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/c++/layout -%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/c++ -%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/c -%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%% -%%PYTHON%%@dirrm %%PYTHON_SITELIBDIR%%/libsbml -@dirrm include/sbml/xml -@dirrm include/sbml/validator -@dirrm include/sbml/util -@dirrm include/sbml/units -@dirrm include/sbml/math -@dirrm include/sbml/extension -@dirrm include/sbml/conversion -@dirrm include/sbml/compress -@dirrm include/sbml/common -@dirrm include/sbml/annotation -@dirrm include/sbml Index: head/biology/mafft/pkg-plist =================================================================== --- head/biology/mafft/pkg-plist (revision 371236) +++ head/biology/mafft/pkg-plist (revision 371237) @@ -1,71 +1,68 @@ bin/einsi bin/fftns bin/fftnsi bin/ginsi bin/linsi bin/mafft bin/mafft-distance bin/mafft-einsi bin/mafft-fftns bin/mafft-fftnsi bin/mafft-ginsi bin/mafft-homologs.rb bin/mafft-linsi bin/mafft-nwns bin/mafft-nwnsi bin/mafft-profile 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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample.dpparttree %%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample.fftns2 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample.fftnsi %%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample.gins1 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample.ginsi %%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample.ginsi.allowshift %%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample.lins1 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample.linsi %%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample.parttree %%PORTEXAMPLES%%%%EXAMPLESDIR%%/samplerna %%PORTEXAMPLES%%%%EXAMPLESDIR%%/samplerna.qinsi %%PORTEXAMPLES%%%%EXAMPLESDIR%%/samplerna.xinsi -@dirrmtry libexec/mafft -%%PORTDOCS%%@dirrmtry %%DOCSDIR%% -%%PORTEXAMPLES%%@dirrmtry %%EXAMPLESDIR%% Index: head/biology/mopac/pkg-plist =================================================================== --- head/biology/mopac/pkg-plist (revision 371236) +++ head/biology/mopac/pkg-plist (revision 371237) @@ -1,9 +1,8 @@ bin/mopac7 include/mopac7/libmopac7.h lib/libmopac7.a lib/libmopac7.so lib/libmopac7.so.0 lib/libmopac7.so.0.0.0 libdata/pkgconfig/libmopac7.pc libexec/mopac7 -@dirrm include/mopac7 Index: head/biology/mummer/pkg-plist =================================================================== --- head/biology/mummer/pkg-plist (revision 371236) +++ head/biology/mummer/pkg-plist (revision 371237) @@ -1,26 +1,25 @@ bin/annotate bin/combineMUMs bin/delta-filter bin/dnadiff bin/exact-tandems bin/gaps bin/mapview bin/mgaps bin/mummer bin/mummerplot bin/nucmer bin/nucmer2xfig bin/promer bin/repeat-match bin/run-mummer1 bin/run-mummer3 bin/show-aligns bin/show-coords bin/show-diff bin/show-snps bin/show-tiling %%PORTDOCS%%%%DOCSDIR%%/COPYRIGHT %%PORTDOCS%%%%DOCSDIR%%/INSTALL %%PORTDOCS%%%%DOCSDIR%%/LICENSE %%PORTDOCS%%%%DOCSDIR%%/README -%%PORTDOCS%%@dirrm %%DOCSDIR%% Index: head/biology/ncbi-toolkit/pkg-plist =================================================================== --- head/biology/ncbi-toolkit/pkg-plist (revision 371236) +++ head/biology/ncbi-toolkit/pkg-plist (revision 371237) @@ -1,822 +1,813 @@ bin/Nentrez bin/Psequin bin/asn2ff bin/asn2gb bin/asn2idx bin/asn2xml bin/asndhuff bin/asntool bin/bl2seq bin/blastall bin/blastcl3 bin/blastclust bin/blastpgp bin/cdscan bin/checksub bin/copymat bin/ddv bin/debruijn bin/demo_regexp bin/demo_regexp_grep bin/dosimple bin/entrcmd bin/entrez2 bin/errhdr bin/fa2htgs bin/fastacmd bin/findspl bin/formatdb bin/formatrpsdb bin/gene2xml bin/getmesh bin/getpub bin/gil2bin bin/idfetch bin/impala bin/indexpub bin/makemat bin/makeset bin/megablast bin/ncbisort bin/rpsblast bin/sbtedit bin/seedtop bin/seqtest bin/taxblast bin/tbl2asn bin/udv bin/vecscreen include/ncbi/FSpCompat.h include/ncbi/FullPath.h include/ncbi/MoreCarbonAccessors.h include/ncbi/MoreFilesExtras.h include/ncbi/MoreFilesX.h include/ncbi/Optimization.h include/ncbi/OptimizationEnd.h include/ncbi/PubStructAsn.h include/ncbi/a2ferr.h include/ncbi/a2ferrdf.h include/ncbi/a2fstruc.h include/ncbi/aacomp.h include/ncbi/accentr.h include/ncbi/accid1.h 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@@ bin/gff3_from_fasta %%SITE_PERL%%/Bio/GFF3/LowLevel.pm %%SITE_PERL%%/Bio/GFF3/LowLevel/Parser.pm %%SITE_PERL%%/Bio/GFF3/LowLevel/Parser/1_0_backcompat.pm %%SITE_PERL%%/Bio/GFF3/Transform/FromFasta.pm %%SITE_PERL%%/Bio/GFF3/Transform/SyncDirectives.pm %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/GFF3/.packlist %%PERL5_MAN3%%/Bio::GFF3::LowLevel.3.gz %%PERL5_MAN3%%/Bio::GFF3::LowLevel::Parser.3.gz %%PERL5_MAN3%%/Bio::GFF3::LowLevel::Parser::1_0_backcompat.3.gz %%PERL5_MAN3%%/Bio::GFF3::Transform::FromFasta.3.gz %%PERL5_MAN3%%/Bio::GFF3::Transform::SyncDirectives.3.gz man/man1/gff3_from_fasta.1.gz -@dirrm %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/GFF3 -@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio -@dirrm %%SITE_PERL%%/Bio/GFF3/Transform -@dirrm %%SITE_PERL%%/Bio/GFF3/LowLevel/Parser -@dirrm %%SITE_PERL%%/Bio/GFF3/LowLevel -@dirrm %%SITE_PERL%%/Bio/GFF3 -@dirrmtry %%SITE_PERL%%/Bio Index: head/biology/p5-Bio-Glite/pkg-plist =================================================================== --- head/biology/p5-Bio-Glite/pkg-plist (revision 371236) +++ head/biology/p5-Bio-Glite/pkg-plist (revision 371237) @@ -1,6 +1,3 @@ %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/Glite/.packlist %%SITE_PERL%%/Bio/Glite.pm %%PERL5_MAN3%%/Bio::Glite.3.gz -@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/Glite -@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio -@dirrmtry %%SITE_PERL%%/Bio Index: head/biology/p5-Bio-Graphics/pkg-plist =================================================================== --- head/biology/p5-Bio-Graphics/pkg-plist (revision 371236) +++ head/biology/p5-Bio-Graphics/pkg-plist (revision 371237) @@ -1,222 +1,218 @@ bin/contig_draw.pl bin/feature_draw.pl bin/frend.pl bin/glyph_help.pl bin/render_msa.pl bin/search_overview.pl %%PERL5_MAN3%%/Bio::Graphics.3.gz %%PERL5_MAN3%%/Bio::Graphics::ConfiguratorI.3.gz %%PERL5_MAN3%%/Bio::Graphics::DrawTransmembrane.3.gz %%PERL5_MAN3%%/Bio::Graphics::Feature.3.gz %%PERL5_MAN3%%/Bio::Graphics::FeatureBase.3.gz %%PERL5_MAN3%%/Bio::Graphics::FeatureDir.3.gz %%PERL5_MAN3%%/Bio::Graphics::FeatureFile.3.gz %%PERL5_MAN3%%/Bio::Graphics::FeatureFile::Iterator.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::Factory.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::alignment.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::allele_tower.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::anchored_arrow.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::arrow.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::box.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::broken_line.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::cds.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::christmas_arrow.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::crossbox.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::dashed_line.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::decorated_gene.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::decorated_transcript.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::diamond.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::dna.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::dot.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::dumbbell.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::ellipse.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::ex.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::extending_arrow.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::fb_shmiggle.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::fixedwidth.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::flag.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::gene.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::generic.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::graded_segments.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::group.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::hat.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::heat_map.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::heat_map_ideogram.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::heterogeneous_segments.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::hidden.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::hybrid_plot.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::ideogram.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::image.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::lightning.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::line.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::merge_parts.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::merged_alignment.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::minmax.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::operon.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::oval.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::pairplot.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::pentagram.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::phylo_align.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::pinsertion.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::primers.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::processed_transcript.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::protein.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::ragged_ends.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::rainbow_gene.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::redgreen_box.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::redgreen_segment.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::repeating_shape.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::rndrect.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::ruler_arrow.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::saw_teeth.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::scale.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::segmented_keyglyph.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::segments.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::so_transcript.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::span.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::spectrogram.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::splice_site.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::stackedplot.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::ternary_plot.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::text_in_box.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::three_letters.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::tic_tac_toe.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::toomany.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::trace.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::track.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::transcript.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::transcript2.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::translation.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::triangle.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::two_bolts.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::vista_plot.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::wave.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::weighted_arrow.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::whiskerplot.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::wiggle_box.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::wiggle_density.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::wiggle_xyplot.3.gz %%PERL5_MAN3%%/Bio::Graphics::Glyph::xyplot.3.gz %%PERL5_MAN3%%/Bio::Graphics::Panel.3.gz %%PERL5_MAN3%%/Bio::Graphics::Pictogram.3.gz %%PERL5_MAN3%%/Bio::Graphics::RendererI.3.gz %%PERL5_MAN3%%/Bio::Graphics::Util.3.gz %%PERL5_MAN3%%/Bio::Graphics::Wiggle.3.gz %%PERL5_MAN3%%/Bio::Graphics::Wiggle::Loader.3.gz %%SITE_PERL%%/Bio/Graphics.pm %%SITE_PERL%%/Bio/Graphics/ConfiguratorI.pm %%SITE_PERL%%/Bio/Graphics/DrawTransmembrane.pm %%SITE_PERL%%/Bio/Graphics/Feature.pm %%SITE_PERL%%/Bio/Graphics/FeatureBase.pm %%SITE_PERL%%/Bio/Graphics/FeatureDir.pm %%SITE_PERL%%/Bio/Graphics/FeatureFile.pm %%SITE_PERL%%/Bio/Graphics/FeatureFile/Iterator.pm %%SITE_PERL%%/Bio/Graphics/GDWrapper.pm %%SITE_PERL%%/Bio/Graphics/Glyph.pm %%SITE_PERL%%/Bio/Graphics/Glyph/Factory.pm %%SITE_PERL%%/Bio/Graphics/Glyph/alignment.pm %%SITE_PERL%%/Bio/Graphics/Glyph/allele_tower.pm %%SITE_PERL%%/Bio/Graphics/Glyph/anchored_arrow.pm %%SITE_PERL%%/Bio/Graphics/Glyph/arrow.pm %%SITE_PERL%%/Bio/Graphics/Glyph/box.pm %%SITE_PERL%%/Bio/Graphics/Glyph/broken_line.pm %%SITE_PERL%%/Bio/Graphics/Glyph/cds.pm %%SITE_PERL%%/Bio/Graphics/Glyph/christmas_arrow.pm %%SITE_PERL%%/Bio/Graphics/Glyph/cross.pm %%SITE_PERL%%/Bio/Graphics/Glyph/crossbox.pm %%SITE_PERL%%/Bio/Graphics/Glyph/dashed_line.pm %%SITE_PERL%%/Bio/Graphics/Glyph/decorated_gene.pm %%SITE_PERL%%/Bio/Graphics/Glyph/decorated_transcript.pm %%SITE_PERL%%/Bio/Graphics/Glyph/diamond.pm %%SITE_PERL%%/Bio/Graphics/Glyph/dna.pm %%SITE_PERL%%/Bio/Graphics/Glyph/dot.pm %%SITE_PERL%%/Bio/Graphics/Glyph/dumbbell.pm %%SITE_PERL%%/Bio/Graphics/Glyph/ellipse.pm %%SITE_PERL%%/Bio/Graphics/Glyph/ex.pm %%SITE_PERL%%/Bio/Graphics/Glyph/extending_arrow.pm %%SITE_PERL%%/Bio/Graphics/Glyph/fb_shmiggle.pm %%SITE_PERL%%/Bio/Graphics/Glyph/fixedwidth.pm %%SITE_PERL%%/Bio/Graphics/Glyph/flag.pm %%SITE_PERL%%/Bio/Graphics/Glyph/gene.pm %%SITE_PERL%%/Bio/Graphics/Glyph/generic.pm %%SITE_PERL%%/Bio/Graphics/Glyph/graded_segments.pm %%SITE_PERL%%/Bio/Graphics/Glyph/group.pm %%SITE_PERL%%/Bio/Graphics/Glyph/hat.pm %%SITE_PERL%%/Bio/Graphics/Glyph/heat_map.pm %%SITE_PERL%%/Bio/Graphics/Glyph/heat_map_ideogram.pm %%SITE_PERL%%/Bio/Graphics/Glyph/heterogeneous_segments.pm %%SITE_PERL%%/Bio/Graphics/Glyph/hidden.pm %%SITE_PERL%%/Bio/Graphics/Glyph/hybrid_plot.pm %%SITE_PERL%%/Bio/Graphics/Glyph/ideogram.pm %%SITE_PERL%%/Bio/Graphics/Glyph/image.pm %%SITE_PERL%%/Bio/Graphics/Glyph/lightning.pm %%SITE_PERL%%/Bio/Graphics/Glyph/line.pm %%SITE_PERL%%/Bio/Graphics/Glyph/merge_parts.pm %%SITE_PERL%%/Bio/Graphics/Glyph/merged_alignment.pm %%SITE_PERL%%/Bio/Graphics/Glyph/minmax.pm %%SITE_PERL%%/Bio/Graphics/Glyph/operon.pm %%SITE_PERL%%/Bio/Graphics/Glyph/oval.pm %%SITE_PERL%%/Bio/Graphics/Glyph/pairplot.pm %%SITE_PERL%%/Bio/Graphics/Glyph/pentagram.pm %%SITE_PERL%%/Bio/Graphics/Glyph/phylo_align.pm %%SITE_PERL%%/Bio/Graphics/Glyph/pinsertion.pm %%SITE_PERL%%/Bio/Graphics/Glyph/point_glyph.pm %%SITE_PERL%%/Bio/Graphics/Glyph/primers.pm %%SITE_PERL%%/Bio/Graphics/Glyph/processed_transcript.pm %%SITE_PERL%%/Bio/Graphics/Glyph/protein.pm %%SITE_PERL%%/Bio/Graphics/Glyph/ragged_ends.pm %%SITE_PERL%%/Bio/Graphics/Glyph/rainbow_gene.pm %%SITE_PERL%%/Bio/Graphics/Glyph/read_pair.pm %%SITE_PERL%%/Bio/Graphics/Glyph/redgreen_box.pm %%SITE_PERL%%/Bio/Graphics/Glyph/redgreen_segment.pm %%SITE_PERL%%/Bio/Graphics/Glyph/repeating_shape.pm %%SITE_PERL%%/Bio/Graphics/Glyph/rndrect.pm %%SITE_PERL%%/Bio/Graphics/Glyph/ruler_arrow.pm %%SITE_PERL%%/Bio/Graphics/Glyph/saw_teeth.pm %%SITE_PERL%%/Bio/Graphics/Glyph/scale.pm %%SITE_PERL%%/Bio/Graphics/Glyph/segmented_keyglyph.pm %%SITE_PERL%%/Bio/Graphics/Glyph/segments.pm %%SITE_PERL%%/Bio/Graphics/Glyph/smoothing.pm %%SITE_PERL%%/Bio/Graphics/Glyph/so_transcript.pm %%SITE_PERL%%/Bio/Graphics/Glyph/span.pm %%SITE_PERL%%/Bio/Graphics/Glyph/spectrogram.pm %%SITE_PERL%%/Bio/Graphics/Glyph/splice_site.pm %%SITE_PERL%%/Bio/Graphics/Glyph/stackedplot.pm %%SITE_PERL%%/Bio/Graphics/Glyph/ternary_plot.pm %%SITE_PERL%%/Bio/Graphics/Glyph/text_in_box.pm %%SITE_PERL%%/Bio/Graphics/Glyph/three_letters.pm %%SITE_PERL%%/Bio/Graphics/Glyph/tic_tac_toe.pm %%SITE_PERL%%/Bio/Graphics/Glyph/toomany.pm %%SITE_PERL%%/Bio/Graphics/Glyph/trace.pm %%SITE_PERL%%/Bio/Graphics/Glyph/track.pm %%SITE_PERL%%/Bio/Graphics/Glyph/transcript.pm %%SITE_PERL%%/Bio/Graphics/Glyph/transcript2.pm %%SITE_PERL%%/Bio/Graphics/Glyph/translation.pm %%SITE_PERL%%/Bio/Graphics/Glyph/triangle.pm %%SITE_PERL%%/Bio/Graphics/Glyph/two_bolts.pm %%SITE_PERL%%/Bio/Graphics/Glyph/vista_plot.pm %%SITE_PERL%%/Bio/Graphics/Glyph/wave.pm %%SITE_PERL%%/Bio/Graphics/Glyph/weighted_arrow.pm %%SITE_PERL%%/Bio/Graphics/Glyph/whiskerplot.pm %%SITE_PERL%%/Bio/Graphics/Glyph/wiggle_box.pm %%SITE_PERL%%/Bio/Graphics/Glyph/wiggle_data.pm %%SITE_PERL%%/Bio/Graphics/Glyph/wiggle_density.pm %%SITE_PERL%%/Bio/Graphics/Glyph/wiggle_whiskers.pm %%SITE_PERL%%/Bio/Graphics/Glyph/wiggle_xyplot.pm %%SITE_PERL%%/Bio/Graphics/Glyph/xyplot.pm %%SITE_PERL%%/Bio/Graphics/Layout.pm %%SITE_PERL%%/Bio/Graphics/Panel.pm %%SITE_PERL%%/Bio/Graphics/Pictogram.pm %%SITE_PERL%%/Bio/Graphics/RendererI.pm %%SITE_PERL%%/Bio/Graphics/Util.pm %%SITE_PERL%%/Bio/Graphics/Wiggle.pm %%SITE_PERL%%/Bio/Graphics/Wiggle/Loader.pm man/man1/contig_draw.pl.1.gz man/man1/feature_draw.pl.1.gz man/man1/frend.pl.1.gz man/man1/search_overview.pl.1.gz -@dirrmtry %%SITE_PERL%%/Bio/Graphics/FeatureFile -@dirrmtry %%SITE_PERL%%/Bio/Graphics/Glyph -@dirrmtry %%SITE_PERL%%/Bio/Graphics/Wiggle -@dirrmtry %%SITE_PERL%%/Bio/Graphics Index: head/biology/p5-Bio-MAGETAB/pkg-plist =================================================================== --- head/biology/p5-Bio-MAGETAB/pkg-plist (revision 371236) +++ head/biology/p5-Bio-MAGETAB/pkg-plist (revision 371237) @@ -1,126 +1,119 @@ bin/deploy_magetab_db.pl bin/fix_ae_magetab.pl bin/read_magetab.pl bin/unload_magetab_namespace.pl %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/MAGETAB/.packlist %%SITE_PERL%%/Bio/MAGETAB/Util/Reader/DataMatrix.pm %%SITE_PERL%%/Bio/MAGETAB/Util/Reader/TagValueFile.pm %%SITE_PERL%%/Bio/MAGETAB/Util/Reader/Tabfile.pm %%SITE_PERL%%/Bio/MAGETAB/Util/Reader/SDRF.pm %%SITE_PERL%%/Bio/MAGETAB/Util/Reader/IDF.pm %%SITE_PERL%%/Bio/MAGETAB/Util/Reader/ADF.pm %%SITE_PERL%%/Bio/MAGETAB/Util/Writer/ADF.pm %%SITE_PERL%%/Bio/MAGETAB/Util/Writer/Tabfile.pm %%SITE_PERL%%/Bio/MAGETAB/Util/Writer/IDF.pm %%SITE_PERL%%/Bio/MAGETAB/Util/Writer/SDRF.pm %%SITE_PERL%%/Bio/MAGETAB/Util/Writer/GraphViz.pm %%SITE_PERL%%/Bio/MAGETAB/Util/Writer.pm %%SITE_PERL%%/Bio/MAGETAB/Util/Reader.pm %%SITE_PERL%%/Bio/MAGETAB/Util/Builder.pm %%SITE_PERL%%/Bio/MAGETAB/Util/DBLoader.pm %%SITE_PERL%%/Bio/MAGETAB/Util/RewriteAE.pm %%SITE_PERL%%/Bio/MAGETAB/Util/Persistence.pm %%SITE_PERL%%/Bio/MAGETAB/Material.pm %%SITE_PERL%%/Bio/MAGETAB/Types.pm %%SITE_PERL%%/Bio/MAGETAB/ControlledTerm.pm %%SITE_PERL%%/Bio/MAGETAB/Contact.pm %%SITE_PERL%%/Bio/MAGETAB/DesignElement.pm %%SITE_PERL%%/Bio/MAGETAB/Investigation.pm %%SITE_PERL%%/Bio/MAGETAB/Comment.pm %%SITE_PERL%%/Bio/MAGETAB/Publication.pm %%SITE_PERL%%/Bio/MAGETAB/Sample.pm %%SITE_PERL%%/Bio/MAGETAB/DataFile.pm %%SITE_PERL%%/Bio/MAGETAB/ArrayDesign.pm %%SITE_PERL%%/Bio/MAGETAB/Event.pm %%SITE_PERL%%/Bio/MAGETAB/Edge.pm %%SITE_PERL%%/Bio/MAGETAB/MatrixColumn.pm %%SITE_PERL%%/Bio/MAGETAB/Normalization.pm %%SITE_PERL%%/Bio/MAGETAB/ParameterValue.pm %%SITE_PERL%%/Bio/MAGETAB/DataAcquisition.pm %%SITE_PERL%%/Bio/MAGETAB/Assay.pm %%SITE_PERL%%/Bio/MAGETAB/SDRFRow.pm %%SITE_PERL%%/Bio/MAGETAB/SDRF.pm %%SITE_PERL%%/Bio/MAGETAB/Data.pm %%SITE_PERL%%/Bio/MAGETAB/MatrixRow.pm %%SITE_PERL%%/Bio/MAGETAB/Extract.pm %%SITE_PERL%%/Bio/MAGETAB/Measurement.pm %%SITE_PERL%%/Bio/MAGETAB/TermSource.pm %%SITE_PERL%%/Bio/MAGETAB/CompositeElement.pm %%SITE_PERL%%/Bio/MAGETAB/BaseClass.pm %%SITE_PERL%%/Bio/MAGETAB/Node.pm %%SITE_PERL%%/Bio/MAGETAB/Protocol.pm %%SITE_PERL%%/Bio/MAGETAB/Reporter.pm %%SITE_PERL%%/Bio/MAGETAB/Factor.pm %%SITE_PERL%%/Bio/MAGETAB/ProtocolApplication.pm %%SITE_PERL%%/Bio/MAGETAB/LabeledExtract.pm %%SITE_PERL%%/Bio/MAGETAB/Feature.pm %%SITE_PERL%%/Bio/MAGETAB/DatabaseEntry.pm %%SITE_PERL%%/Bio/MAGETAB/Source.pm 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%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxa1_3425.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxa2_3079.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxa3_2783.2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxa4_3426.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxa5_3415.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxa6_1040.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxa7_2668.2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxa7_3750.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxa9_2622.2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxb13_3479.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxb3_1720.2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxb4_2627.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxb5_3122.2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxb6_3428.2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxb7_3953.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxb8_3780.2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxb9_3413.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxc10_2779.2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxc11_3718.2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxc12_3480.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxc13_3127.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxc4_3491.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxc5_2630.2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxc6_3954.2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxc8_3429.2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxc9_2367.2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxd10_2368.2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxd11_3873.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxd12_3481.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxd13_2356.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxd1_3448.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxd3_1742.2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxd8_2644.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Ipf1_3815.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Irx2_0900.3.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Irx3_0920.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Irx3_2226.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Irx4_2242.3.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Irx5_2385.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Irx6_2623.2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Isl2_3430.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Isx_3445.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Lbx2_3869.2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Lhx1_2240.2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Lhx2_0953.2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Lhx3_3431.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Lhx4_1719.2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Lhx5_2279.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Lhx6_2272.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Lhx6_3432.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Lhx8_2247.2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Lhx9_3492.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Lmx1a_2238.2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Lmx1b_3433.2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Meis1_2335.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Meox1_2310.2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Mrg1_2246.2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Mrg2_2302.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Msx1_3031.2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Msx2_3449.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Msx3_3206.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Nkx1-1_3856.3.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Nkx1-2_3214.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Nkx2-2_2823.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Nkx2-3_3435.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Nkx2-4_3074.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Nkx2-5_3436.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Nkx2-6_3437.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Nkx2-9_3082.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Nkx3-1_2923.2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Nkx6-1_2825.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Nkx6-1_2825.2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Nkx6-3_3446.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Obox1_3970.2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Obox2_3438.2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Obox3_3439.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Obox5_2284.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Obox5_3963.2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Obox6_3440.2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Og2x_3719.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Otp_3496.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Otx1_2325.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Otx2_3441.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Pax4_3989.2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Pax6_3838.3.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Pax7_3783.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Pbx1_3203.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Phox2a_3947.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Phox2b_3948.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Pitx1_2312.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Pitx2_2274.3.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Pitx3_3497.2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Pknox1_2364.2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Pknox2_3077.2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Pou1f1_3818.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Pou2f1_3081.2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Pou2f2_3748.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Pou2f3_3986.2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Pou3f1_3819.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Pou3f2_2824.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Pou3f3_3235.2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Pou3f4_3773.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Pou4f3_2791.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Pou6f1_1731.2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Pou6f1_3733.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Prop1_3949.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Prrx1_3442.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Prrx2_3072.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Rax_3443.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Rhox11_1765.2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Rhox11_2205.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Rhox6_4251.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Shox2_2641.2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Six1_0935.2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Six2_2307.2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Six3_1732.2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Six4_2860.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Six6_2267.4.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Six6_2267.5.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Tcf1_2666.2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Tcf2_0913.2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Tgif1_2342.2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Tgif2_3451.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Titf1_1722.2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Tlx2_3498.2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Uncx4.1_2281.2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Vax1_3499.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Vax2_3500.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Vsx1_1728.1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Aft1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Aro80.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Asg1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Bas1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Cbf1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Cep3.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Cha4.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Cup9.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Ecm22.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Fhl1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Fkh1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Fkh2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Gal4.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Gat1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Gat3.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Gat4.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Gcn4.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Gln3.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Gsm1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Gzf3.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Hal9.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Leu3.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Lys14.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Matalpha2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Mbp1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Mcm1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Met32.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Mga1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Mig1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Mig2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Mig3.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Ndt80.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Nhp6a.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Nhp6b.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Nrg1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Oaf1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Pbf1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Pbf2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Pdr1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Phd1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Pho2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Pho4.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Put3.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Rap1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Rdr1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Rds1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Rds2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Rgt1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Rph1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Rpn4.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Rsc3.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Rsc30.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Rtg3.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Sfl1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Sfp1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Sip4.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Skn7.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Smp1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Spt15.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Srd1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Stb3.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Stp2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Stp4.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Sum1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Sut2.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Tbf1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Tbs1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Tea1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Tec1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Tye7.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Ume6.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Usv1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Xbp1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Yap1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Yap6.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Ybr239c.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Ydr520c.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Yer130c.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Ygr067c.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Ykl222c.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Yll054c.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Yml081w.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Ynr063w.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Yox1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Ypr013c.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Ypr015c.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Ypr196w.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Yrm1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Yrr1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/NBT06/Cbf1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/NBT06/Ceh-22.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/NBT06/Oct-1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/NBT06/Rap1.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/NBT06/Zif268.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/PNAS08/Cgd2_3490.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/PNAS08/PF14_0633.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/PNAS08/PFF0200c.pwm %%DATADIR%%/position_weight_matrix/UniPROBE/all_uniprobe.csv %%DATADIR%%/primer3/drosophila.w.transposons.txt %%DATADIR%%/primer3/humrep_and_simple.txt %%DATADIR%%/primer3/rodent_ref.txt %%DATADIR%%/primer3/rodrep_and_simple.txt %%DATADIR%%/query_samples/RepeatsWithORF.uql %%DATADIR%%/query_samples/SimpleGene.uql %%DATADIR%%/samples/ABIF/A01.abi %%DATADIR%%/samples/ACE/BL060C3.ace %%DATADIR%%/samples/ACE/K26.ace %%DATADIR%%/samples/Assembly/chrM.fa %%DATADIR%%/samples/Assembly/chrM.sam %%DATADIR%%/samples/Assembly/chrM.sorted.bam %%DATADIR%%/samples/CLUSTALW/COI.aln %%DATADIR%%/samples/CLUSTALW/HIV-1.aln %%DATADIR%%/samples/CLUSTALW/ty3.aln.gz %%DATADIR%%/samples/EMBL/AF177870.emb %%DATADIR%%/samples/EMBL/AL000263.emb %%DATADIR%%/samples/FASTA/human_T1.fa %%DATADIR%%/samples/FASTQ/eas.fastq %%DATADIR%%/samples/GFF/5prime_utr_intron_A20.gff %%DATADIR%%/samples/GFF/5prime_utr_intron_A21.gff %%DATADIR%%/samples/Genbank/CVU55762.gb %%DATADIR%%/samples/Genbank/NC_014267.1.gb %%DATADIR%%/samples/Genbank/PBR322.gb %%DATADIR%%/samples/Genbank/murine.gb %%DATADIR%%/samples/Genbank/sars.gb %%DATADIR%%/samples/HMM/aligment15900.hmm %%DATADIR%%/samples/MMDB/1CRN.prt %%DATADIR%%/samples/MMDB/2JQS.prt %%DATADIR%%/samples/MSF/HMA.msf %%DATADIR%%/samples/MSF/lipid8.msf %%DATADIR%%/samples/MSF/pla2_20.msf %%DATADIR%%/samples/Newick/COI.nwk %%DATADIR%%/samples/PDB/1CF7.PDB %%DATADIR%%/samples/PDB/1CRN.PDB %%DATADIR%%/samples/PDB/3INS.PDB %%DATADIR%%/samples/Raw/raw.seq %%DATADIR%%/samples/SCF/90-JRI-07.scf %%DATADIR%%/samples/Stockholm/CBS.sto %%DATADIR%%/samples/Stockholm/UPSK.sto %%DATADIR%%/samples/Swiss-Prot/D0VTW9.txt %%DATADIR%%/samples/Swiss-Prot/P01375.txt %%DATADIR%%/samples/Swiss-Prot/P16152.txt %%DATADIR%%/sitecon_models/eukaryotic/CEBP_a.sitecon.gz %%DATADIR%%/sitecon_models/eukaryotic/CEBPall.sitecon.gz %%DATADIR%%/sitecon_models/eukaryotic/CLOCK.sitecon.gz 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