=>> Building science/py-phono3py build started at Tue May 28 00:39:54 EAT 2019 port directory: /usr/ports/science/py-phono3py package name: py36-phono3py-1.13.3.27_2 building for: FreeBSD 113i386-default-job-01 11.3-BETA1 FreeBSD 11.3-BETA1 i386 maintained by: yuri@FreeBSD.org Makefile ident: Poudriere version: 3.3.99.20190311 Host OSVERSION: 1300029 Jail OSVERSION: 1102510 Job Id: 01 ---Begin Environment--- SHELL=/bin/csh UNAME_p=i386 UNAME_m=i386 OSVERSION=1102510 UNAME_v=FreeBSD 11.3-BETA1 UNAME_r=11.3-BETA1 BLOCKSIZE=K MAIL=/var/mail/root WARNING_WAIT=0 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.3.99.20190311 MASTERMNT=/poudriere/data/.m/113i386-default/ref DEV_WARNING_WAIT=0 POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=tmux-256color GID=0 UID=0 PWD=/poudriere/data/.m/113i386-default/ref/.p/pool NO_WARNING_PKG_INSTALL_EOL=yes P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=113i386-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/poudriere/data/.m/113i386-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py36 DEPENDS_ARGS= MAKE_ARGS= FLAVOR=py36 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.6" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-phono3py/work-py36 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-phono3py/work-py36 HOME=/wrkdirs/usr/ports/science/py-phono3py/work-py36 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-phono3py/work-py36/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-phono3py/work-py36 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-phono3py/work-py36 HOME=/wrkdirs/usr/ports/science/py-phono3py/work-py36 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-phono3py/work-py36/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -L/usr/local/lib -fstack-protector-strong " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.6m PYTHON_LIBDIR=lib/python3.6 PYTHON_PLATFORM=freebsd11 PYTHON_SITELIBDIR=lib/python3.6/site-packages PYTHON_SUFFIX=36 PYTHON_VER=3.6 PYTHON_VERSION=python3.6 PYTHON2="@comment " PYTHON3="" OSREL=11.3 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/phono3py" EXAMPLESDIR="share/examples/phono3py" DATADIR="share/phono3py" WWWDIR="www/phono3py" ETCDIR="etc/phono3py" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/phono3py DOCSDIR=/usr/local/share/doc/phono3py EXAMPLESDIR=/usr/local/share/examples/phono3py WWWDIR=/usr/local/www/phono3py ETCDIR=/usr/local/etc/phono3py --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=i386 MACHINE_ARCH=i386 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### DEV_WARNING_WAIT=0 #NO_IGNORE= # Minimize TeX dependency devel_doxygen_UNSET += DOCS LATEX # Bootstrapping isn't necessary for modern compilers and prevents taking # advantage of native-xtools. GCC < 6 aren't C++11-compatible while # Clang >= 6 and GCC >= 6 default to C++14. lang_gcc6_UNSET += BOOTSTRAP lang_gcc7_UNSET += BOOTSTRAP lang_gcc8_UNSET += BOOTSTRAP lang_gcc9_UNSET += BOOTSTRAP # Workaround GCC/qemu crashes .if ${MACHINE:Marm*} math_ceres-solver_UNSET += OPENMP graphics_colmap_UNSET += OPENMP .endif #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 8.0.0 (tags/RELEASE_800/final 356365) (based on LLVM 8.0.0) Target: i386-unknown-freebsd11.3 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 8.0.0 (tags/RELEASE_800/final 356365) (based on LLVM 8.0.0) Target: i386-unknown-freebsd11.3 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-m" "elf_i386_fbsd" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 8.0.0 (tags/RELEASE_800/final 356365) (based on LLVM 8.0.0) Target: i386-unknown-freebsd11.3 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=i386 OPSYS=FreeBSD _OSRELEASE=11.3-BETA1 OSREL=11.3 OSVERSION=1102510 PYTHONBASE=/usr/local _SMP_CPUS=8 CONFIGURE_MAX_CMD_LEN=262144 HAVE_PORTS_ENV=1 #### Misc Poudriere #### ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 524288 stack size (kbytes, -s) 65536 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 63536 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===> License BSD3CLAUSE accepted by the user =========================================================================== =================================================== ===> py36-phono3py-1.13.3.27_2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_5.txz [113i386-default-job-01] Installing pkg-1.10.5_5... [113i386-default-job-01] Extracting pkg-1.10.5_5: .......... done ===> py36-phono3py-1.13.3.27_2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py36-phono3py-1.13.3.27_2 =========================================================================== =================================================== =========================================================================== =================================================== ===> License BSD3CLAUSE accepted by the user ===> py36-phono3py-1.13.3.27_2 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py36-phono3py-1.13.3.27_2 for building =========================================================================== =================================================== ===> License BSD3CLAUSE accepted by the user ===> py36-phono3py-1.13.3.27_2 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py36-phono3py-1.13.3.27_2 for building => SHA256 Checksum OK for phono3py-1.13.3.27.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License BSD3CLAUSE accepted by the user ===> py36-phono3py-1.13.3.27_2 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py36-phono3py-1.13.3.27_2 for building ===> Extracting for py36-phono3py-1.13.3.27_2 => SHA256 Checksum OK for phono3py-1.13.3.27.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for py36-phono3py-1.13.3.27_2 =========================================================================== =================================================== ===> py36-phono3py-1.13.3.27_2 depends on package: py36-numpy>0 - not found ===> Installing existing package /packages/All/py36-numpy-1.16.1_2,1.txz [113i386-default-job-01] Installing py36-numpy-1.16.1_2,1... [113i386-default-job-01] `-- Installing blas-3.5.0_5... [113i386-default-job-01] | `-- Installing gcc8-8.3.0_2... [113i386-default-job-01] | | `-- Installing binutils-2.32_1,1... [113i386-default-job-01] | | `-- Installing gettext-runtime-0.19.8.1_2... [113i386-default-job-01] | | | `-- Installing indexinfo-0.3.1... [113i386-default-job-01] | | | `-- Extracting indexinfo-0.3.1: .... done [113i386-default-job-01] | | `-- Extracting gettext-runtime-0.19.8.1_2: .......... done [113i386-default-job-01] | | `-- Extracting binutils-2.32_1,1: .......... done [113i386-default-job-01] | | `-- Installing gmp-6.1.2_1... [113i386-default-job-01] | | `-- Extracting gmp-6.1.2_1: .......... done [113i386-default-job-01] | | `-- Installing mpc-1.1.0_2... [113i386-default-job-01] | | `-- Installing mpfr-4.0.2... 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[113i386-default-job-01] | `-- Extracting openblas-0.2.20_8,1: ......... done [113i386-default-job-01] `-- Extracting suitesparse-5.2.0_3: .......... done [113i386-default-job-01] Extracting py36-numpy-1.16.1_2,1: .......... done Message from gcc8-8.3.0_2: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Message from cblas-1.0_11: ===> NOTICE: The cblas port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Message from python36-3.6.8_2: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py36-gdbm databases/py-gdbm@py36 py36-sqlite3 databases/py-sqlite3@py36 py36-tkinter x11-toolkits/py-tkinter@py36 =========================================================================== Message from metis-5.1.0_7: ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> py36-phono3py-1.13.3.27_2 depends on package: py36-numpy>0 - found ===> Returning to build of py36-phono3py-1.13.3.27_2 ===> py36-phono3py-1.13.3.27_2 depends on package: py36-h5py>0 - not found ===> Installing existing package /packages/All/py36-h5py-2.9.0_1.txz [113i386-default-job-01] Installing py36-h5py-2.9.0_1... [113i386-default-job-01] `-- Installing hdf5-1.10.5_1... [113i386-default-job-01] | `-- Installing hdf-szip-2.1.1... [113i386-default-job-01] | `-- Extracting hdf-szip-2.1.1: .......... done [113i386-default-job-01] `-- Extracting hdf5-1.10.5_1: .......... done [113i386-default-job-01] `-- Installing py36-six-1.12.0... 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[113i386-default-job-01] | | `-- Extracting libXext-1.3.3_3,1: .......... done [113i386-default-job-01] | | `-- Extracting libXScrnSaver-1.2.3_2: .......... done [113i386-default-job-01] | | `-- Installing libXft-2.3.2_3... [113i386-default-job-01] | | `-- Installing libXrender-0.9.10_2... [113i386-default-job-01] | | `-- Extracting libXrender-0.9.10_2: .......... done [113i386-default-job-01] | | `-- Extracting libXft-2.3.2_3: .......... done [113i386-default-job-01] | `-- Extracting tk86-8.6.9_1: .......... done [113i386-default-job-01] `-- Extracting py36-tkinter-3.6.8_6: ........ done [113i386-default-job-01] `-- Installing py36-tornado-5.1.1... [113i386-default-job-01] `-- Extracting py36-tornado-5.1.1: .......... done [113i386-default-job-01] Extracting py36-matplotlib-2.2.4: .......... done Message from freetype2-2.9.1: The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/ft2-toc.html, if documentation was installed). ===> py36-phono3py-1.13.3.27_2 depends on package: py36-matplotlib>0 - found ===> Returning to build of py36-phono3py-1.13.3.27_2 ===> py36-phono3py-1.13.3.27_2 depends on package: py36-phonopy>=1.13.2 - not found ===> Installing existing package /packages/All/py36-phonopy-2.1.3.txz [113i386-default-job-01] Installing py36-phonopy-2.1.3... [113i386-default-job-01] `-- Installing py36-yaml-5.1... [113i386-default-job-01] `-- Extracting py36-yaml-5.1: .......... done [113i386-default-job-01] Extracting py36-phonopy-2.1.3: .......... done ===> py36-phono3py-1.13.3.27_2 depends on package: py36-phonopy>=1.13.2 - found ===> Returning to build of py36-phono3py-1.13.3.27_2 ===> py36-phono3py-1.13.3.27_2 depends on package: py36-yaml>0 - found ===> py36-phono3py-1.13.3.27_2 depends on file: /usr/local/include/lapacke.h - not found ===> Installing existing package /packages/All/lapacke-3.5.0_7.txz [113i386-default-job-01] Installing lapacke-3.5.0_7... [113i386-default-job-01] Extracting lapacke-3.5.0_7: .......... done ===> py36-phono3py-1.13.3.27_2 depends on file: /usr/local/include/lapacke.h - found ===> Returning to build of py36-phono3py-1.13.3.27_2 ===> py36-phono3py-1.13.3.27_2 depends on executable: cython-3.6 - not found ===> Installing existing package /packages/All/py36-cython-0.29_1.txz [113i386-default-job-01] Installing py36-cython-0.29_1... [113i386-default-job-01] Extracting py36-cython-0.29_1: .......... done ===> py36-phono3py-1.13.3.27_2 depends on executable: cython-3.6 - found ===> Returning to build of py36-phono3py-1.13.3.27_2 ===> py36-phono3py-1.13.3.27_2 depends on package: py36-setuptools>0 - found ===> py36-phono3py-1.13.3.27_2 depends on file: /usr/local/bin/python3.6 - found =========================================================================== =================================================== ===> py36-phono3py-1.13.3.27_2 depends on shared library: libopenblas.so - found (/usr/local/lib/libopenblas.so) =========================================================================== =>> Recording filesystem state for prebuild... done =================================================== ===> py36-phono3py-1.13.3.27_2 depends on package: py36-numpy>0 - found ===> py36-phono3py-1.13.3.27_2 depends on package: py36-h5py>0 - found ===> py36-phono3py-1.13.3.27_2 depends on package: py36-matplotlib>0 - found ===> py36-phono3py-1.13.3.27_2 depends on package: py36-phonopy>=1.13.2 - found ===> py36-phono3py-1.13.3.27_2 depends on package: py36-yaml>0 - found ===> py36-phono3py-1.13.3.27_2 depends on file: /usr/local/include/lapacke.h - found ===> py36-phono3py-1.13.3.27_2 depends on executable: cython-3.6 - found ===> py36-phono3py-1.13.3.27_2 depends on package: py36-setuptools>0 - found ===> py36-phono3py-1.13.3.27_2 depends on file: /usr/local/bin/python3.6 - found ===> py36-phono3py-1.13.3.27_2 depends on shared library: libopenblas.so - found (/usr/local/lib/libopenblas.so) ===> Configuring for py36-phono3py-1.13.3.27_2 setuptools is used. running config =========================================================================== =================================================== ===> Building for py36-phono3py-1.13.3.27_2 setuptools is used. running build running build_py creating build creating build/lib.freebsd-11.3-BETA1-i386-3.6 creating build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py copying phono3py/file_IO.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py copying phono3py/__init__.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py copying phono3py/version.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py creating build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/cui copying phono3py/cui/create_supercells.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/cui copying phono3py/cui/__init__.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/cui copying phono3py/cui/translate_settings.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/cui copying phono3py/cui/phono3py_argparse.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/cui copying phono3py/cui/settings.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/cui copying phono3py/cui/create_force_constants.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/cui copying phono3py/cui/triplets_info.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/cui copying phono3py/cui/show_log.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/cui copying phono3py/cui/phono3py_yaml.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/cui creating build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/other copying phono3py/other/__init__.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/other copying phono3py/other/alm_wrapper.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/other copying phono3py/other/isotope.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/other creating build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon copying phono3py/phonon/__init__.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon copying phono3py/phonon/solver.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon creating build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3 copying phono3py/phonon3/collision_matrix.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3 copying phono3py/phonon3/displacement_fc3.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3 copying phono3py/phonon3/real_to_reciprocal.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3 copying phono3py/phonon3/conductivity_LBTE.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3 copying phono3py/phonon3/conductivity.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3 copying phono3py/phonon3/gruneisen.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3 copying phono3py/phonon3/__init__.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3 copying phono3py/phonon3/interaction.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3 copying phono3py/phonon3/imag_self_energy.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3 copying phono3py/phonon3/frequency_shift.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3 copying phono3py/phonon3/fc3.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3 copying phono3py/phonon3/joint_dos.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3 copying phono3py/phonon3/conductivity_RTA.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3 copying phono3py/phonon3/triplets.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3 copying phono3py/phonon3/reciprocal_to_normal.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3 running build_ext building 'phono3py._lapackepy' extension creating build/temp.freebsd-11.3-BETA1-i386-3.6 creating build/temp.freebsd-11.3-BETA1-i386-3.6/c creating build/temp.freebsd-11.3-BETA1-i386-3.6/c/harmonic cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/_lapackepy.c -o build/temp.freebsd-11.3-BETA1-i386-3.6/c/_lapackepy.o -fopenmp -DMULTITHREADED_BLAS In file included from c/_lapackepy.c:38: In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4: In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12: In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it with " \ ^ 1 warning generated. cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/harmonic/dynmat.c -o build/temp.freebsd-11.3-BETA1-i386-3.6/c/harmonic/dynmat.o -fopenmp -DMULTITHREADED_BLAS cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/harmonic/phonon.c -o build/temp.freebsd-11.3-BETA1-i386-3.6/c/harmonic/phonon.o -fopenmp -DMULTITHREADED_BLAS cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/harmonic/phonoc_array.c -o build/temp.freebsd-11.3-BETA1-i386-3.6/c/harmonic/phonoc_array.o -fopenmp -DMULTITHREADED_BLAS In file included from c/harmonic/phonoc_array.c:36: In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4: In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12: In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it with " \ ^ 1 warning generated. cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/harmonic/phonoc_utils.c -o build/temp.freebsd-11.3-BETA1-i386-3.6/c/harmonic/phonoc_utils.o -fopenmp -DMULTITHREADED_BLAS In file included from c/harmonic/phonoc_utils.c:37: In file included from c/harmonic_h/phonoc_array.h:39: In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4: In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12: In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it with " \ ^ 1 warning generated. cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/harmonic/lapack_wrapper.c -o build/temp.freebsd-11.3-BETA1-i386-3.6/c/harmonic/lapack_wrapper.o -fopenmp -DMULTITHREADED_BLAS cc -shared -L/usr/local/lib -fstack-protector-strong -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.freebsd-11.3-BETA1-i386-3.6/c/_lapackepy.o build/temp.freebsd-11.3-BETA1-i386-3.6/c/harmonic/dynmat.o build/temp.freebsd-11.3-BETA1-i386-3.6/c/harmonic/phonon.o build/temp.freebsd-11.3-BETA1-i386-3.6/c/harmonic/phonoc_array.o build/temp.freebsd-11.3-BETA1-i386-3.6/c/harmonic/phonoc_utils.o build/temp.freebsd-11.3-BETA1-i386-3.6/c/harmonic/lapack_wrapper.o -L/usr/local/lib -lpython3.6m -o build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/_lapackepy.so -lgomp -lopenblas building 'phono3py._phono3py' extension creating build/temp.freebsd-11.3-BETA1-i386-3.6/c/anharmonic creating build/temp.freebsd-11.3-BETA1-i386-3.6/c/anharmonic/phonon3 creating build/temp.freebsd-11.3-BETA1-i386-3.6/c/anharmonic/other creating build/temp.freebsd-11.3-BETA1-i386-3.6/c/anharmonic/triplet creating build/temp.freebsd-11.3-BETA1-i386-3.6/c/spglib creating build/temp.freebsd-11.3-BETA1-i386-3.6/c/kspclib cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/_phono3py.c -o build/temp.freebsd-11.3-BETA1-i386-3.6/c/_phono3py.o -fopenmp -DMULTITHREADED_BLAS In file included from c/_phono3py.c:39: In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4: In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12: In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it with " \ ^ 1 warning generated. cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/harmonic/dynmat.c -o build/temp.freebsd-11.3-BETA1-i386-3.6/c/harmonic/dynmat.o -fopenmp -DMULTITHREADED_BLAS cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/harmonic/phonon.c -o build/temp.freebsd-11.3-BETA1-i386-3.6/c/harmonic/phonon.o -fopenmp -DMULTITHREADED_BLAS cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/harmonic/lapack_wrapper.c -o build/temp.freebsd-11.3-BETA1-i386-3.6/c/harmonic/lapack_wrapper.o -fopenmp -DMULTITHREADED_BLAS cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/harmonic/phonoc_array.c -o build/temp.freebsd-11.3-BETA1-i386-3.6/c/harmonic/phonoc_array.o -fopenmp -DMULTITHREADED_BLAS In file included from c/harmonic/phonoc_array.c:36: In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4: In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12: In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it with " \ ^ 1 warning generated. cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/harmonic/phonoc_utils.c -o build/temp.freebsd-11.3-BETA1-i386-3.6/c/harmonic/phonoc_utils.o -fopenmp -DMULTITHREADED_BLAS In file included from c/harmonic/phonoc_utils.c:37: In file included from c/harmonic_h/phonoc_array.h:39: In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4: In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12: In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it with " \ ^ 1 warning generated. cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/anharmonic/phonon3/fc3.c -o build/temp.freebsd-11.3-BETA1-i386-3.6/c/anharmonic/phonon3/fc3.o -fopenmp -DMULTITHREADED_BLAS cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/anharmonic/phonon3/frequency_shift.c -o build/temp.freebsd-11.3-BETA1-i386-3.6/c/anharmonic/phonon3/frequency_shift.o -fopenmp -DMULTITHREADED_BLAS In file included from c/anharmonic/phonon3/frequency_shift.c:37: In file included from c/harmonic_h/phonoc_array.h:39: In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4: In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12: In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it with " \ ^ 1 warning generated. cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/anharmonic/phonon3/interaction.c -o build/temp.freebsd-11.3-BETA1-i386-3.6/c/anharmonic/phonon3/interaction.o -fopenmp -DMULTITHREADED_BLAS In file included from c/anharmonic/phonon3/interaction.c:37: In file included from c/harmonic_h/phonoc_array.h:39: In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4: In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12: In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it with " \ ^ 1 warning generated. cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/anharmonic/phonon3/real_to_reciprocal.c -o build/temp.freebsd-11.3-BETA1-i386-3.6/c/anharmonic/phonon3/real_to_reciprocal.o -fopenmp -DMULTITHREADED_BLAS In file included from c/anharmonic/phonon3/real_to_reciprocal.c:39: In file included from c/harmonic_h/phonoc_array.h:39: In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4: In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12: In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it with " \ ^ 1 warning generated. cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/anharmonic/phonon3/reciprocal_to_normal.c -o build/temp.freebsd-11.3-BETA1-i386-3.6/c/anharmonic/phonon3/reciprocal_to_normal.o -fopenmp -DMULTITHREADED_BLAS In file included from c/anharmonic/phonon3/reciprocal_to_normal.c:37: In file included from c/harmonic_h/phonoc_utils.h:38: In file included from c/harmonic_h/phonoc_array.h:39: In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4: In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12: In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it with " \ ^ 1 warning generated. cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/anharmonic/phonon3/imag_self_energy_with_g.c -o build/temp.freebsd-11.3-BETA1-i386-3.6/c/anharmonic/phonon3/imag_self_energy_with_g.o -fopenmp -DMULTITHREADED_BLAS In file included from c/anharmonic/phonon3/imag_self_energy_with_g.c:37: In file included from c/harmonic_h/phonoc_array.h:39: In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4: In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12: In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it with " \ ^ 1 warning generated. cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/anharmonic/phonon3/pp_collision.c -o build/temp.freebsd-11.3-BETA1-i386-3.6/c/anharmonic/phonon3/pp_collision.o -fopenmp -DMULTITHREADED_BLAS In file included from c/anharmonic/phonon3/pp_collision.c:37: In file included from c/harmonic_h/phonoc_array.h:39: In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4: In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12: In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it with " \ ^ 1 warning generated. cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/anharmonic/phonon3/collision_matrix.c -o build/temp.freebsd-11.3-BETA1-i386-3.6/c/anharmonic/phonon3/collision_matrix.o -fopenmp -DMULTITHREADED_BLAS In file included from c/anharmonic/phonon3/collision_matrix.c:38: In file included from c/harmonic_h/phonoc_array.h:39: In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4: In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12: In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it with " \ ^ 1 warning generated. cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/anharmonic/other/isotope.c -o build/temp.freebsd-11.3-BETA1-i386-3.6/c/anharmonic/other/isotope.o -fopenmp -DMULTITHREADED_BLAS In file included from c/anharmonic/other/isotope.c:37: In file included from c/harmonic_h/phonoc_utils.h:38: In file included from c/harmonic_h/phonoc_array.h:39: In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4: In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12: In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it with " \ ^ 1 warning generated. cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/anharmonic/triplet/triplet.c -o build/temp.freebsd-11.3-BETA1-i386-3.6/c/anharmonic/triplet/triplet.o -fopenmp -DMULTITHREADED_BLAS cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/anharmonic/triplet/triplet_kpoint.c -o build/temp.freebsd-11.3-BETA1-i386-3.6/c/anharmonic/triplet/triplet_kpoint.o -fopenmp -DMULTITHREADED_BLAS cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/anharmonic/triplet/triplet_iw.c -o build/temp.freebsd-11.3-BETA1-i386-3.6/c/anharmonic/triplet/triplet_iw.o -fopenmp -DMULTITHREADED_BLAS In file included from c/anharmonic/triplet/triplet_iw.c:36: In file included from c/harmonic_h/phonoc_utils.h:38: In file included from c/harmonic_h/phonoc_array.h:39: In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4: In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12: In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it with " \ ^ 1 warning generated. cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/spglib/mathfunc.c -o build/temp.freebsd-11.3-BETA1-i386-3.6/c/spglib/mathfunc.o -fopenmp -DMULTITHREADED_BLAS cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/spglib/kpoint.c -o build/temp.freebsd-11.3-BETA1-i386-3.6/c/spglib/kpoint.o -fopenmp -DMULTITHREADED_BLAS cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/kspclib/kgrid.c -o build/temp.freebsd-11.3-BETA1-i386-3.6/c/kspclib/kgrid.o -fopenmp -DMULTITHREADED_BLAS cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/kspclib/tetrahedron_method.c -o build/temp.freebsd-11.3-BETA1-i386-3.6/c/kspclib/tetrahedron_method.o -fopenmp -DMULTITHREADED_BLAS cc -shared -L/usr/local/lib -fstack-protector-strong -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.freebsd-11.3-BETA1-i386-3.6/c/_phono3py.o build/temp.freebsd-11.3-BETA1-i386-3.6/c/harmonic/dynmat.o build/temp.freebsd-11.3-BETA1-i386-3.6/c/harmonic/phonon.o build/temp.freebsd-11.3-BETA1-i386-3.6/c/harmonic/lapack_wrapper.o build/temp.freebsd-11.3-BETA1-i386-3.6/c/harmonic/phonoc_array.o build/temp.freebsd-11.3-BETA1-i386-3.6/c/harmonic/phonoc_utils.o build/temp.freebsd-11.3-BETA1-i386-3.6/c/anharmonic/phonon3/fc3.o build/temp.freebsd-11.3-BETA1-i386-3.6/c/anharmonic/phonon3/frequency_shift.o build/temp.freebsd-11.3-BETA1-i386-3.6/c/anharmonic/phonon3/interaction.o build/temp.freebsd-11.3-BETA1-i386-3.6/c/anharmonic/phonon3/real_to_reciprocal.o build/temp.freebsd-11.3-BETA1-i386-3.6/c/anharmonic/phonon3/reciprocal_to_normal.o build/temp.freebsd-11.3-BETA1-i386-3.6/c/anharmonic/phonon3/imag_self_energy_with_g.o build/temp.freebsd-11.3-BETA1-i386-3.6/c/anharmonic/phonon3/pp_collision.o build/temp.freebsd-11.3-BETA1-i386-3.6/c/anharmonic/phonon3/collision_matrix.o build/temp.freebsd-11.3-BETA1-i386-3.6/c/anharmonic/other/isotope.o build/temp.freebsd-11.3-BETA1-i386-3.6/c/anharmonic/triplet/triplet.o build/temp.freebsd-11.3-BETA1-i386-3.6/c/anharmonic/triplet/triplet_kpoint.o build/temp.freebsd-11.3-BETA1-i386-3.6/c/anharmonic/triplet/triplet_iw.o build/temp.freebsd-11.3-BETA1-i386-3.6/c/spglib/mathfunc.o build/temp.freebsd-11.3-BETA1-i386-3.6/c/spglib/kpoint.o build/temp.freebsd-11.3-BETA1-i386-3.6/c/kspclib/kgrid.o build/temp.freebsd-11.3-BETA1-i386-3.6/c/kspclib/tetrahedron_method.o -L/usr/local/lib -lpython3.6m -o build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/_phono3py.so -lgomp -lopenblas running build_scripts creating build/scripts-3.6 copying and adjusting scripts/phono3py -> build/scripts-3.6 copying and adjusting scripts/phono3py-kaccum -> build/scripts-3.6 copying and adjusting scripts/phono3py-kdeplot -> build/scripts-3.6 copying and adjusting scripts/phono3py-coleigplot -> build/scripts-3.6 changing mode of build/scripts-3.6/phono3py from 644 to 755 changing mode of build/scripts-3.6/phono3py-kaccum from 644 to 755 changing mode of build/scripts-3.6/phono3py-kdeplot from 644 to 755 changing mode of build/scripts-3.6/phono3py-coleigplot from 644 to 755 =========================================================================== =>> Checking for filesystem violations... done =================================================== ===> py36-phono3py-1.13.3.27_2 depends on package: py36-numpy>0 - found ===> py36-phono3py-1.13.3.27_2 depends on package: py36-h5py>0 - found ===> py36-phono3py-1.13.3.27_2 depends on package: py36-matplotlib>0 - found ===> py36-phono3py-1.13.3.27_2 depends on package: py36-phonopy>=1.13.2 - found ===> py36-phono3py-1.13.3.27_2 depends on package: py36-yaml>0 - found ===> py36-phono3py-1.13.3.27_2 depends on package: py36-setuptools>0 - found ===> py36-phono3py-1.13.3.27_2 depends on file: /usr/local/bin/python3.6 - found =========================================================================== =>> Recording filesystem state for prestage... done =================================================== ===> Staging for py36-phono3py-1.13.3.27_2 ===> py36-phono3py-1.13.3.27_2 depends on package: py36-numpy>0 - found ===> py36-phono3py-1.13.3.27_2 depends on package: py36-h5py>0 - found ===> py36-phono3py-1.13.3.27_2 depends on package: py36-matplotlib>0 - found ===> py36-phono3py-1.13.3.27_2 depends on package: py36-phonopy>=1.13.2 - found ===> py36-phono3py-1.13.3.27_2 depends on package: py36-yaml>0 - found ===> py36-phono3py-1.13.3.27_2 depends on package: py36-setuptools>0 - found ===> py36-phono3py-1.13.3.27_2 depends on file: /usr/local/bin/python3.6 - found ===> Generating temporary packing list setuptools is used. running install running build running build_py running build_ext running build_scripts running install_lib creating /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6 creating /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages creating /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/file_IO.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/__init__.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/version.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/_phono3py.so -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py creating /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon/__init__.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon/solver.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/_lapackepy.so -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py creating /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/other copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/other/__init__.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/other copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/other/alm_wrapper.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/other copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/other/isotope.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/other creating /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/cui copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/cui/create_supercells.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/cui copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/cui/__init__.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/cui copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/cui/translate_settings.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/cui copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/cui/phono3py_argparse.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/cui copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/cui/settings.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/cui copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/cui/create_force_constants.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/cui copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/cui/triplets_info.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/cui copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/cui/show_log.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/cui copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/cui/phono3py_yaml.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/cui creating /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3 copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3/collision_matrix.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3 copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3/displacement_fc3.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3 copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3/real_to_reciprocal.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3 copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3/conductivity_LBTE.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3 copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3/conductivity.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3 copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3/gruneisen.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3 copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3/__init__.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3 copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3/interaction.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3 copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3/imag_self_energy.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3 copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3/frequency_shift.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3 copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3/fc3.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3 copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3/joint_dos.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3 copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3/conductivity_RTA.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3 copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3/triplets.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3 copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3/reciprocal_to_normal.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3 byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/file_IO.py to file_IO.cpython-36.pyc byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/__init__.py to __init__.cpython-36.pyc byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/version.py to version.cpython-36.pyc byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon/__init__.py to __init__.cpython-36.pyc byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon/solver.py to solver.cpython-36.pyc byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/other/__init__.py to __init__.cpython-36.pyc byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/other/alm_wrapper.py to alm_wrapper.cpython-36.pyc byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/other/isotope.py to isotope.cpython-36.pyc byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/cui/create_supercells.py to create_supercells.cpython-36.pyc byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/cui/__init__.py to __init__.cpython-36.pyc byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/cui/translate_settings.py to translate_settings.cpython-36.pyc byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/cui/phono3py_argparse.py to phono3py_argparse.cpython-36.pyc byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/cui/settings.py to settings.cpython-36.pyc byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/cui/create_force_constants.py to create_force_constants.cpython-36.pyc byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/cui/triplets_info.py to triplets_info.cpython-36.pyc byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/cui/show_log.py to show_log.cpython-36.pyc byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/cui/phono3py_yaml.py to phono3py_yaml.cpython-36.pyc byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3/collision_matrix.py to collision_matrix.cpython-36.pyc byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3/displacement_fc3.py to displacement_fc3.cpython-36.pyc byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3/real_to_reciprocal.py to real_to_reciprocal.cpython-36.pyc byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3/conductivity_LBTE.py to conductivity_LBTE.cpython-36.pyc byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3/conductivity.py to conductivity.cpython-36.pyc byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3/gruneisen.py to gruneisen.cpython-36.pyc byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3/__init__.py to __init__.cpython-36.pyc byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3/interaction.py to interaction.cpython-36.pyc byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3/imag_self_energy.py to imag_self_energy.cpython-36.pyc byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3/frequency_shift.py to frequency_shift.cpython-36.pyc byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3/fc3.py to fc3.cpython-36.pyc byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3/joint_dos.py to joint_dos.cpython-36.pyc byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3/conductivity_RTA.py to conductivity_RTA.cpython-36.pyc byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3/triplets.py to triplets.cpython-36.pyc byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3/reciprocal_to_normal.py to reciprocal_to_normal.cpython-36.pyc writing byte-compilation script '/tmp/tmpkvk_ceic.py' /usr/local/bin/python3.6 /tmp/tmpkvk_ceic.py removing /tmp/tmpkvk_ceic.py running install_egg_info running egg_info writing phono3py.egg-info/PKG-INFO writing dependency_links to phono3py.egg-info/dependency_links.txt writing requirements to phono3py.egg-info/requires.txt writing top-level names to phono3py.egg-info/top_level.txt reading manifest file 'phono3py.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'phono3py.egg-info/SOURCES.txt' Copying phono3py.egg-info to /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py-1.13.3.27-py3.6.egg-info running install_scripts copying build/scripts-3.6/phono3py-kaccum -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/bin copying build/scripts-3.6/phono3py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/bin copying build/scripts-3.6/phono3py-kdeplot -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/bin copying build/scripts-3.6/phono3py-coleigplot -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/bin changing mode of /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/bin/phono3py-kaccum to 755 changing mode of /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/bin/phono3py to 755 changing mode of /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/bin/phono3py-kdeplot to 755 changing mode of /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/bin/phono3py-coleigplot to 755 writing list of installed files to '/wrkdirs/usr/ports/science/py-phono3py/work-py36/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) =========================================================================== ====> Running Q/A tests (stage-qa) ====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) =>> Checking for staging violations... done =================================================== ===> Building package for py36-phono3py-1.13.3.27_2 =========================================================================== =>> Recording filesystem state for preinst... done =================================================== ===> Installing for py36-phono3py-1.13.3.27_2 ===> Checking if py36-phono3py is already installed ===> Registering installation for py36-phono3py-1.13.3.27_2 [113i386-default-job-01] Installing py36-phono3py-1.13.3.27_2... =========================================================================== =>> Checking shared library dependencies 0x00000001 NEEDED Shared library: [libc.so.7] 0x00000001 NEEDED Shared library: [libomp.so] 0x00000001 NEEDED Shared library: [libopenblas.so.0] 0x00000001 NEEDED Shared library: [libpython3.6m.so.1.0] =================================================== ===> Deinstalling for py36-phono3py ===> Deinstalling py36-phono3py-1.13.3.27_2 Updating database digests format: .......... done Checking integrity... done (0 conflicting) Deinstallation has been requested for the following 1 packages (of 0 packages in the universe): Installed packages to be REMOVED: py36-phono3py-1.13.3.27_2 Number of packages to be removed: 1 The operation will free 1 MiB. [113i386-default-job-01] [1/1] Deinstalling py36-phono3py-1.13.3.27_2... [113i386-default-job-01] [1/1] Deleting files for py36-phono3py-1.13.3.27_2: .......... done =========================================================================== =>> Checking for extra files and directories =>> Cleaning up wrkdir ===> Cleaning for py36-phono3py-1.13.3.27_2 build of science/py-phono3py | py36-phono3py-1.13.3.27_2 ended at Tue May 28 00:40:12 EAT 2019 build time: 00:00:18