=>> Building science/py-phono3py
build started at Tue May 28 00:39:54 EAT 2019
port directory: /usr/ports/science/py-phono3py
package name: py36-phono3py-1.13.3.27_2
building for: FreeBSD 113i386-default-job-01 11.3-BETA1 FreeBSD 11.3-BETA1 i386
maintained by: yuri@FreeBSD.org
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=======================<phase: check-sanity >============================
===> License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> py36-phono3py-1.13.3.27_2 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.10.5_5.txz
[113i386-default-job-01] Installing pkg-1.10.5_5...
[113i386-default-job-01] Extracting pkg-1.10.5_5: .......... done
===> py36-phono3py-1.13.3.27_2 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of py36-phono3py-1.13.3.27_2
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License BSD3CLAUSE accepted by the user
===> py36-phono3py-1.13.3.27_2 depends on file: /usr/local/sbin/pkg - found
===> Fetching all distfiles required by py36-phono3py-1.13.3.27_2 for building
===========================================================================
=======================<phase: checksum >============================
===> License BSD3CLAUSE accepted by the user
===> py36-phono3py-1.13.3.27_2 depends on file: /usr/local/sbin/pkg - found
===> Fetching all distfiles required by py36-phono3py-1.13.3.27_2 for building
=> SHA256 Checksum OK for phono3py-1.13.3.27.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License BSD3CLAUSE accepted by the user
===> py36-phono3py-1.13.3.27_2 depends on file: /usr/local/sbin/pkg - found
===> Fetching all distfiles required by py36-phono3py-1.13.3.27_2 for building
===> Extracting for py36-phono3py-1.13.3.27_2
=> SHA256 Checksum OK for phono3py-1.13.3.27.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
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=======================<phase: patch >============================
===> Patching for py36-phono3py-1.13.3.27_2
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=======================<phase: build-depends >============================
===> py36-phono3py-1.13.3.27_2 depends on package: py36-numpy>0 - not found
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[113i386-default-job-01] `-- Installing suitesparse-5.2.0_3...
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Message from gcc8-8.3.0_2:
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc8
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
Message from cblas-1.0_11:
===> NOTICE:
The cblas port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
Message from python36-3.6.8_2:
===========================================================================
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
py36-gdbm databases/py-gdbm@py36
py36-sqlite3 databases/py-sqlite3@py36
py36-tkinter x11-toolkits/py-tkinter@py36
===========================================================================
Message from metis-5.1.0_7:
===> NOTICE:
The metis port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
===> py36-phono3py-1.13.3.27_2 depends on package: py36-numpy>0 - found
===> Returning to build of py36-phono3py-1.13.3.27_2
===> py36-phono3py-1.13.3.27_2 depends on package: py36-h5py>0 - not found
===> Installing existing package /packages/All/py36-h5py-2.9.0_1.txz
[113i386-default-job-01] Installing py36-h5py-2.9.0_1...
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[113i386-default-job-01] Extracting py36-h5py-2.9.0_1: .......... done
===> py36-phono3py-1.13.3.27_2 depends on package: py36-h5py>0 - found
===> Returning to build of py36-phono3py-1.13.3.27_2
===> py36-phono3py-1.13.3.27_2 depends on package: py36-matplotlib>0 - not found
===> Installing existing package /packages/All/py36-matplotlib-2.2.4.txz
[113i386-default-job-01] Installing py36-matplotlib-2.2.4...
[113i386-default-job-01] `-- Installing fontconfig-2.12.6,1...
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[113i386-default-job-01] `-- Installing png-1.6.37...
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Message from freetype2-2.9.1:
The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as
the default, emulating a modern version of ClearType. This change inevitably
leads to different rendering results, and you might change port's options to
adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment
variable).
The environment variable "FREETYPE_PROPERTIES" can be used to control the
driver properties. Example:
FREETYPE_PROPERTIES=truetype:interpreter-version=35 \
cff:no-stem-darkening=1 \
autofitter:warping=1
This allows to select, say, the subpixel hinting mode at runtime for a given
application.
The controllable properties are listed in the section "Controlling FreeType
Modules" in the reference's table of contents
(/usr/local/share/doc/freetype2/reference/ft2-toc.html, if documentation was installed).
===> py36-phono3py-1.13.3.27_2 depends on package: py36-matplotlib>0 - found
===> Returning to build of py36-phono3py-1.13.3.27_2
===> py36-phono3py-1.13.3.27_2 depends on package: py36-phonopy>=1.13.2 - not found
===> Installing existing package /packages/All/py36-phonopy-2.1.3.txz
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===> py36-phono3py-1.13.3.27_2 depends on package: py36-phonopy>=1.13.2 - found
===> Returning to build of py36-phono3py-1.13.3.27_2
===> py36-phono3py-1.13.3.27_2 depends on package: py36-yaml>0 - found
===> py36-phono3py-1.13.3.27_2 depends on file: /usr/local/include/lapacke.h - not found
===> Installing existing package /packages/All/lapacke-3.5.0_7.txz
[113i386-default-job-01] Installing lapacke-3.5.0_7...
[113i386-default-job-01] Extracting lapacke-3.5.0_7: .......... done
===> py36-phono3py-1.13.3.27_2 depends on file: /usr/local/include/lapacke.h - found
===> Returning to build of py36-phono3py-1.13.3.27_2
===> py36-phono3py-1.13.3.27_2 depends on executable: cython-3.6 - not found
===> Installing existing package /packages/All/py36-cython-0.29_1.txz
[113i386-default-job-01] Installing py36-cython-0.29_1...
[113i386-default-job-01] Extracting py36-cython-0.29_1: .......... done
===> py36-phono3py-1.13.3.27_2 depends on executable: cython-3.6 - found
===> Returning to build of py36-phono3py-1.13.3.27_2
===> py36-phono3py-1.13.3.27_2 depends on package: py36-setuptools>0 - found
===> py36-phono3py-1.13.3.27_2 depends on file: /usr/local/bin/python3.6 - found
===========================================================================
=======================<phase: lib-depends >============================
===> py36-phono3py-1.13.3.27_2 depends on shared library: libopenblas.so - found (/usr/local/lib/libopenblas.so)
===========================================================================
=>> Recording filesystem state for prebuild... done
=======================<phase: configure >============================
===> py36-phono3py-1.13.3.27_2 depends on package: py36-numpy>0 - found
===> py36-phono3py-1.13.3.27_2 depends on package: py36-h5py>0 - found
===> py36-phono3py-1.13.3.27_2 depends on package: py36-matplotlib>0 - found
===> py36-phono3py-1.13.3.27_2 depends on package: py36-phonopy>=1.13.2 - found
===> py36-phono3py-1.13.3.27_2 depends on package: py36-yaml>0 - found
===> py36-phono3py-1.13.3.27_2 depends on file: /usr/local/include/lapacke.h - found
===> py36-phono3py-1.13.3.27_2 depends on executable: cython-3.6 - found
===> py36-phono3py-1.13.3.27_2 depends on package: py36-setuptools>0 - found
===> py36-phono3py-1.13.3.27_2 depends on file: /usr/local/bin/python3.6 - found
===> py36-phono3py-1.13.3.27_2 depends on shared library: libopenblas.so - found (/usr/local/lib/libopenblas.so)
===> Configuring for py36-phono3py-1.13.3.27_2
setuptools is used.
running config
===========================================================================
=======================<phase: build >============================
===> Building for py36-phono3py-1.13.3.27_2
setuptools is used.
running build
running build_py
creating build
creating build/lib.freebsd-11.3-BETA1-i386-3.6
creating build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py
copying phono3py/file_IO.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py
copying phono3py/__init__.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py
copying phono3py/version.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py
creating build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/cui
copying phono3py/cui/create_supercells.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/cui
copying phono3py/cui/__init__.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/cui
copying phono3py/cui/translate_settings.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/cui
copying phono3py/cui/phono3py_argparse.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/cui
copying phono3py/cui/settings.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/cui
copying phono3py/cui/create_force_constants.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/cui
copying phono3py/cui/triplets_info.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/cui
copying phono3py/cui/show_log.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/cui
copying phono3py/cui/phono3py_yaml.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/cui
creating build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/other
copying phono3py/other/__init__.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/other
copying phono3py/other/alm_wrapper.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/other
copying phono3py/other/isotope.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/other
creating build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon
copying phono3py/phonon/__init__.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon
copying phono3py/phonon/solver.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon
creating build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3
copying phono3py/phonon3/collision_matrix.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3
copying phono3py/phonon3/displacement_fc3.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3
copying phono3py/phonon3/real_to_reciprocal.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3
copying phono3py/phonon3/conductivity_LBTE.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3
copying phono3py/phonon3/conductivity.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3
copying phono3py/phonon3/gruneisen.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3
copying phono3py/phonon3/__init__.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3
copying phono3py/phonon3/interaction.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3
copying phono3py/phonon3/imag_self_energy.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3
copying phono3py/phonon3/frequency_shift.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3
copying phono3py/phonon3/fc3.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3
copying phono3py/phonon3/joint_dos.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3
copying phono3py/phonon3/conductivity_RTA.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3
copying phono3py/phonon3/triplets.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3
copying phono3py/phonon3/reciprocal_to_normal.py -> build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3
running build_ext
building 'phono3py._lapackepy' extension
creating build/temp.freebsd-11.3-BETA1-i386-3.6
creating build/temp.freebsd-11.3-BETA1-i386-3.6/c
creating build/temp.freebsd-11.3-BETA1-i386-3.6/c/harmonic
cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/_lapackepy.c -o build/temp.freebsd-11.3-BETA1-i386-3.6/c/_lapackepy.o -fopenmp -DMULTITHREADED_BLAS
In file included from c/_lapackepy.c:38:
In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:
/usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
^
1 warning generated.
cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/harmonic/dynmat.c -o build/temp.freebsd-11.3-BETA1-i386-3.6/c/harmonic/dynmat.o -fopenmp -DMULTITHREADED_BLAS
cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/harmonic/phonon.c -o build/temp.freebsd-11.3-BETA1-i386-3.6/c/harmonic/phonon.o -fopenmp -DMULTITHREADED_BLAS
cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/harmonic/phonoc_array.c -o build/temp.freebsd-11.3-BETA1-i386-3.6/c/harmonic/phonoc_array.o -fopenmp -DMULTITHREADED_BLAS
In file included from c/harmonic/phonoc_array.c:36:
In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:
/usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
^
1 warning generated.
cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/harmonic/phonoc_utils.c -o build/temp.freebsd-11.3-BETA1-i386-3.6/c/harmonic/phonoc_utils.o -fopenmp -DMULTITHREADED_BLAS
In file included from c/harmonic/phonoc_utils.c:37:
In file included from c/harmonic_h/phonoc_array.h:39:
In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:
/usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
^
1 warning generated.
cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/harmonic/lapack_wrapper.c -o build/temp.freebsd-11.3-BETA1-i386-3.6/c/harmonic/lapack_wrapper.o -fopenmp -DMULTITHREADED_BLAS
cc -shared -L/usr/local/lib -fstack-protector-strong -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.freebsd-11.3-BETA1-i386-3.6/c/_lapackepy.o build/temp.freebsd-11.3-BETA1-i386-3.6/c/harmonic/dynmat.o build/temp.freebsd-11.3-BETA1-i386-3.6/c/harmonic/phonon.o build/temp.freebsd-11.3-BETA1-i386-3.6/c/harmonic/phonoc_array.o build/temp.freebsd-11.3-BETA1-i386-3.6/c/harmonic/phonoc_utils.o build/temp.freebsd-11.3-BETA1-i386-3.6/c/harmonic/lapack_wrapper.o -L/usr/local/lib -lpython3.6m -o build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/_lapackepy.so -lgomp -lopenblas
building 'phono3py._phono3py' extension
creating build/temp.freebsd-11.3-BETA1-i386-3.6/c/anharmonic
creating build/temp.freebsd-11.3-BETA1-i386-3.6/c/anharmonic/phonon3
creating build/temp.freebsd-11.3-BETA1-i386-3.6/c/anharmonic/other
creating build/temp.freebsd-11.3-BETA1-i386-3.6/c/anharmonic/triplet
creating build/temp.freebsd-11.3-BETA1-i386-3.6/c/spglib
creating build/temp.freebsd-11.3-BETA1-i386-3.6/c/kspclib
cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/_phono3py.c -o build/temp.freebsd-11.3-BETA1-i386-3.6/c/_phono3py.o -fopenmp -DMULTITHREADED_BLAS
In file included from c/_phono3py.c:39:
In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:
/usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
^
1 warning generated.
cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/harmonic/dynmat.c -o build/temp.freebsd-11.3-BETA1-i386-3.6/c/harmonic/dynmat.o -fopenmp -DMULTITHREADED_BLAS
cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/harmonic/phonon.c -o build/temp.freebsd-11.3-BETA1-i386-3.6/c/harmonic/phonon.o -fopenmp -DMULTITHREADED_BLAS
cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/harmonic/lapack_wrapper.c -o build/temp.freebsd-11.3-BETA1-i386-3.6/c/harmonic/lapack_wrapper.o -fopenmp -DMULTITHREADED_BLAS
cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/harmonic/phonoc_array.c -o build/temp.freebsd-11.3-BETA1-i386-3.6/c/harmonic/phonoc_array.o -fopenmp -DMULTITHREADED_BLAS
In file included from c/harmonic/phonoc_array.c:36:
In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:
/usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
^
1 warning generated.
cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/harmonic/phonoc_utils.c -o build/temp.freebsd-11.3-BETA1-i386-3.6/c/harmonic/phonoc_utils.o -fopenmp -DMULTITHREADED_BLAS
In file included from c/harmonic/phonoc_utils.c:37:
In file included from c/harmonic_h/phonoc_array.h:39:
In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:
/usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
^
1 warning generated.
cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/anharmonic/phonon3/fc3.c -o build/temp.freebsd-11.3-BETA1-i386-3.6/c/anharmonic/phonon3/fc3.o -fopenmp -DMULTITHREADED_BLAS
cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/anharmonic/phonon3/frequency_shift.c -o build/temp.freebsd-11.3-BETA1-i386-3.6/c/anharmonic/phonon3/frequency_shift.o -fopenmp -DMULTITHREADED_BLAS
In file included from c/anharmonic/phonon3/frequency_shift.c:37:
In file included from c/harmonic_h/phonoc_array.h:39:
In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:
/usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
^
1 warning generated.
cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/anharmonic/phonon3/interaction.c -o build/temp.freebsd-11.3-BETA1-i386-3.6/c/anharmonic/phonon3/interaction.o -fopenmp -DMULTITHREADED_BLAS
In file included from c/anharmonic/phonon3/interaction.c:37:
In file included from c/harmonic_h/phonoc_array.h:39:
In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:
/usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
^
1 warning generated.
cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/anharmonic/phonon3/real_to_reciprocal.c -o build/temp.freebsd-11.3-BETA1-i386-3.6/c/anharmonic/phonon3/real_to_reciprocal.o -fopenmp -DMULTITHREADED_BLAS
In file included from c/anharmonic/phonon3/real_to_reciprocal.c:39:
In file included from c/harmonic_h/phonoc_array.h:39:
In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:
/usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
^
1 warning generated.
cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/anharmonic/phonon3/reciprocal_to_normal.c -o build/temp.freebsd-11.3-BETA1-i386-3.6/c/anharmonic/phonon3/reciprocal_to_normal.o -fopenmp -DMULTITHREADED_BLAS
In file included from c/anharmonic/phonon3/reciprocal_to_normal.c:37:
In file included from c/harmonic_h/phonoc_utils.h:38:
In file included from c/harmonic_h/phonoc_array.h:39:
In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:
/usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
^
1 warning generated.
cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/anharmonic/phonon3/imag_self_energy_with_g.c -o build/temp.freebsd-11.3-BETA1-i386-3.6/c/anharmonic/phonon3/imag_self_energy_with_g.o -fopenmp -DMULTITHREADED_BLAS
In file included from c/anharmonic/phonon3/imag_self_energy_with_g.c:37:
In file included from c/harmonic_h/phonoc_array.h:39:
In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:
/usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
^
1 warning generated.
cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/anharmonic/phonon3/pp_collision.c -o build/temp.freebsd-11.3-BETA1-i386-3.6/c/anharmonic/phonon3/pp_collision.o -fopenmp -DMULTITHREADED_BLAS
In file included from c/anharmonic/phonon3/pp_collision.c:37:
In file included from c/harmonic_h/phonoc_array.h:39:
In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:
/usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
^
1 warning generated.
cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/anharmonic/phonon3/collision_matrix.c -o build/temp.freebsd-11.3-BETA1-i386-3.6/c/anharmonic/phonon3/collision_matrix.o -fopenmp -DMULTITHREADED_BLAS
In file included from c/anharmonic/phonon3/collision_matrix.c:38:
In file included from c/harmonic_h/phonoc_array.h:39:
In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:
/usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
^
1 warning generated.
cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/anharmonic/other/isotope.c -o build/temp.freebsd-11.3-BETA1-i386-3.6/c/anharmonic/other/isotope.o -fopenmp -DMULTITHREADED_BLAS
In file included from c/anharmonic/other/isotope.c:37:
In file included from c/harmonic_h/phonoc_utils.h:38:
In file included from c/harmonic_h/phonoc_array.h:39:
In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:
/usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
^
1 warning generated.
cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/anharmonic/triplet/triplet.c -o build/temp.freebsd-11.3-BETA1-i386-3.6/c/anharmonic/triplet/triplet.o -fopenmp -DMULTITHREADED_BLAS
cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/anharmonic/triplet/triplet_kpoint.c -o build/temp.freebsd-11.3-BETA1-i386-3.6/c/anharmonic/triplet/triplet_kpoint.o -fopenmp -DMULTITHREADED_BLAS
cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/anharmonic/triplet/triplet_iw.c -o build/temp.freebsd-11.3-BETA1-i386-3.6/c/anharmonic/triplet/triplet_iw.o -fopenmp -DMULTITHREADED_BLAS
In file included from c/anharmonic/triplet/triplet_iw.c:36:
In file included from c/harmonic_h/phonoc_utils.h:38:
In file included from c/harmonic_h/phonoc_array.h:39:
In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:
/usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
^
1 warning generated.
cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/spglib/mathfunc.c -o build/temp.freebsd-11.3-BETA1-i386-3.6/c/spglib/mathfunc.o -fopenmp -DMULTITHREADED_BLAS
cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/spglib/kpoint.c -o build/temp.freebsd-11.3-BETA1-i386-3.6/c/spglib/kpoint.o -fopenmp -DMULTITHREADED_BLAS
cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/kspclib/kgrid.c -o build/temp.freebsd-11.3-BETA1-i386-3.6/c/kspclib/kgrid.o -fopenmp -DMULTITHREADED_BLAS
cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/kspclib/tetrahedron_method.c -o build/temp.freebsd-11.3-BETA1-i386-3.6/c/kspclib/tetrahedron_method.o -fopenmp -DMULTITHREADED_BLAS
cc -shared -L/usr/local/lib -fstack-protector-strong -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.freebsd-11.3-BETA1-i386-3.6/c/_phono3py.o build/temp.freebsd-11.3-BETA1-i386-3.6/c/harmonic/dynmat.o build/temp.freebsd-11.3-BETA1-i386-3.6/c/harmonic/phonon.o build/temp.freebsd-11.3-BETA1-i386-3.6/c/harmonic/lapack_wrapper.o build/temp.freebsd-11.3-BETA1-i386-3.6/c/harmonic/phonoc_array.o build/temp.freebsd-11.3-BETA1-i386-3.6/c/harmonic/phonoc_utils.o build/temp.freebsd-11.3-BETA1-i386-3.6/c/anharmonic/phonon3/fc3.o build/temp.freebsd-11.3-BETA1-i386-3.6/c/anharmonic/phonon3/frequency_shift.o build/temp.freebsd-11.3-BETA1-i386-3.6/c/anharmonic/phonon3/interaction.o build/temp.freebsd-11.3-BETA1-i386-3.6/c/anharmonic/phonon3/real_to_reciprocal.o build/temp.freebsd-11.3-BETA1-i386-3.6/c/anharmonic/phonon3/reciprocal_to_normal.o build/temp.freebsd-11.3-BETA1-i386-3.6/c/anharmonic/phonon3/imag_self_energy_with_g.o build/temp.freebsd-11.3-BETA1-i386-3.6/c/anharmonic/phonon3/pp_collision.o build/temp.freebsd-11.3-BETA1-i386-3.6/c/anharmonic/phonon3/collision_matrix.o build/temp.freebsd-11.3-BETA1-i386-3.6/c/anharmonic/other/isotope.o build/temp.freebsd-11.3-BETA1-i386-3.6/c/anharmonic/triplet/triplet.o build/temp.freebsd-11.3-BETA1-i386-3.6/c/anharmonic/triplet/triplet_kpoint.o build/temp.freebsd-11.3-BETA1-i386-3.6/c/anharmonic/triplet/triplet_iw.o build/temp.freebsd-11.3-BETA1-i386-3.6/c/spglib/mathfunc.o build/temp.freebsd-11.3-BETA1-i386-3.6/c/spglib/kpoint.o build/temp.freebsd-11.3-BETA1-i386-3.6/c/kspclib/kgrid.o build/temp.freebsd-11.3-BETA1-i386-3.6/c/kspclib/tetrahedron_method.o -L/usr/local/lib -lpython3.6m -o build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/_phono3py.so -lgomp -lopenblas
running build_scripts
creating build/scripts-3.6
copying and adjusting scripts/phono3py -> build/scripts-3.6
copying and adjusting scripts/phono3py-kaccum -> build/scripts-3.6
copying and adjusting scripts/phono3py-kdeplot -> build/scripts-3.6
copying and adjusting scripts/phono3py-coleigplot -> build/scripts-3.6
changing mode of build/scripts-3.6/phono3py from 644 to 755
changing mode of build/scripts-3.6/phono3py-kaccum from 644 to 755
changing mode of build/scripts-3.6/phono3py-kdeplot from 644 to 755
changing mode of build/scripts-3.6/phono3py-coleigplot from 644 to 755
===========================================================================
=>> Checking for filesystem violations... done
=======================<phase: run-depends >============================
===> py36-phono3py-1.13.3.27_2 depends on package: py36-numpy>0 - found
===> py36-phono3py-1.13.3.27_2 depends on package: py36-h5py>0 - found
===> py36-phono3py-1.13.3.27_2 depends on package: py36-matplotlib>0 - found
===> py36-phono3py-1.13.3.27_2 depends on package: py36-phonopy>=1.13.2 - found
===> py36-phono3py-1.13.3.27_2 depends on package: py36-yaml>0 - found
===> py36-phono3py-1.13.3.27_2 depends on package: py36-setuptools>0 - found
===> py36-phono3py-1.13.3.27_2 depends on file: /usr/local/bin/python3.6 - found
===========================================================================
=>> Recording filesystem state for prestage... done
=======================<phase: stage >============================
===> Staging for py36-phono3py-1.13.3.27_2
===> py36-phono3py-1.13.3.27_2 depends on package: py36-numpy>0 - found
===> py36-phono3py-1.13.3.27_2 depends on package: py36-h5py>0 - found
===> py36-phono3py-1.13.3.27_2 depends on package: py36-matplotlib>0 - found
===> py36-phono3py-1.13.3.27_2 depends on package: py36-phonopy>=1.13.2 - found
===> py36-phono3py-1.13.3.27_2 depends on package: py36-yaml>0 - found
===> py36-phono3py-1.13.3.27_2 depends on package: py36-setuptools>0 - found
===> py36-phono3py-1.13.3.27_2 depends on file: /usr/local/bin/python3.6 - found
===> Generating temporary packing list
setuptools is used.
running install
running build
running build_py
running build_ext
running build_scripts
running install_lib
creating /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6
creating /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages
creating /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py
copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/file_IO.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py
copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/__init__.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py
copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/version.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py
copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/_phono3py.so -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py
creating /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon
copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon/__init__.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon
copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon/solver.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon
copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/_lapackepy.so -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py
creating /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/other
copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/other/__init__.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/other
copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/other/alm_wrapper.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/other
copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/other/isotope.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/other
creating /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/cui
copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/cui/create_supercells.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/cui
copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/cui/__init__.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/cui
copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/cui/translate_settings.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/cui
copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/cui/phono3py_argparse.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/cui
copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/cui/settings.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/cui
copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/cui/create_force_constants.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/cui
copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/cui/triplets_info.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/cui
copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/cui/show_log.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/cui
copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/cui/phono3py_yaml.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/cui
creating /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3
copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3/collision_matrix.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3
copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3/displacement_fc3.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3
copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3/real_to_reciprocal.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3
copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3/conductivity_LBTE.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3
copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3/conductivity.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3
copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3/gruneisen.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3
copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3/__init__.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3
copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3/interaction.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3
copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3/imag_self_energy.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3
copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3/frequency_shift.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3
copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3/fc3.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3
copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3/joint_dos.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3
copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3/conductivity_RTA.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3
copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3/triplets.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3
copying build/lib.freebsd-11.3-BETA1-i386-3.6/phono3py/phonon3/reciprocal_to_normal.py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3
byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/file_IO.py to file_IO.cpython-36.pyc
byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/__init__.py to __init__.cpython-36.pyc
byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/version.py to version.cpython-36.pyc
byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon/__init__.py to __init__.cpython-36.pyc
byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon/solver.py to solver.cpython-36.pyc
byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/other/__init__.py to __init__.cpython-36.pyc
byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/other/alm_wrapper.py to alm_wrapper.cpython-36.pyc
byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/other/isotope.py to isotope.cpython-36.pyc
byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/cui/create_supercells.py to create_supercells.cpython-36.pyc
byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/cui/__init__.py to __init__.cpython-36.pyc
byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/cui/translate_settings.py to translate_settings.cpython-36.pyc
byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/cui/phono3py_argparse.py to phono3py_argparse.cpython-36.pyc
byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/cui/settings.py to settings.cpython-36.pyc
byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/cui/create_force_constants.py to create_force_constants.cpython-36.pyc
byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/cui/triplets_info.py to triplets_info.cpython-36.pyc
byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/cui/show_log.py to show_log.cpython-36.pyc
byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/cui/phono3py_yaml.py to phono3py_yaml.cpython-36.pyc
byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3/collision_matrix.py to collision_matrix.cpython-36.pyc
byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3/displacement_fc3.py to displacement_fc3.cpython-36.pyc
byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3/real_to_reciprocal.py to real_to_reciprocal.cpython-36.pyc
byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3/conductivity_LBTE.py to conductivity_LBTE.cpython-36.pyc
byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3/conductivity.py to conductivity.cpython-36.pyc
byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3/gruneisen.py to gruneisen.cpython-36.pyc
byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3/__init__.py to __init__.cpython-36.pyc
byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3/interaction.py to interaction.cpython-36.pyc
byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3/imag_self_energy.py to imag_self_energy.cpython-36.pyc
byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3/frequency_shift.py to frequency_shift.cpython-36.pyc
byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3/fc3.py to fc3.cpython-36.pyc
byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3/joint_dos.py to joint_dos.cpython-36.pyc
byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3/conductivity_RTA.py to conductivity_RTA.cpython-36.pyc
byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3/triplets.py to triplets.cpython-36.pyc
byte-compiling /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3/reciprocal_to_normal.py to reciprocal_to_normal.cpython-36.pyc
writing byte-compilation script '/tmp/tmpkvk_ceic.py'
/usr/local/bin/python3.6 /tmp/tmpkvk_ceic.py
removing /tmp/tmpkvk_ceic.py
running install_egg_info
running egg_info
writing phono3py.egg-info/PKG-INFO
writing dependency_links to phono3py.egg-info/dependency_links.txt
writing requirements to phono3py.egg-info/requires.txt
writing top-level names to phono3py.egg-info/top_level.txt
reading manifest file 'phono3py.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'phono3py.egg-info/SOURCES.txt'
Copying phono3py.egg-info to /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/lib/python3.6/site-packages/phono3py-1.13.3.27-py3.6.egg-info
running install_scripts
copying build/scripts-3.6/phono3py-kaccum -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/bin
copying build/scripts-3.6/phono3py -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/bin
copying build/scripts-3.6/phono3py-kdeplot -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/bin
copying build/scripts-3.6/phono3py-coleigplot -> /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/bin
changing mode of /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/bin/phono3py-kaccum to 755
changing mode of /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/bin/phono3py to 755
changing mode of /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/bin/phono3py-kdeplot to 755
changing mode of /wrkdirs/usr/ports/science/py-phono3py/work-py36/stage/usr/local/bin/phono3py-coleigplot to 755
writing list of installed files to '/wrkdirs/usr/ports/science/py-phono3py/work-py36/.PLIST.pymodtmp'
====> Compressing man pages (compress-man)
===========================================================================
====> Running Q/A tests (stage-qa)
====> Checking for pkg-plist issues (check-plist)
===> Parsing plist
===> Checking for items in STAGEDIR missing from pkg-plist
===> Checking for items in pkg-plist which are not in STAGEDIR
===> No pkg-plist issues found (check-plist)
=>> Checking for staging violations... done
=======================<phase: package >============================
===> Building package for py36-phono3py-1.13.3.27_2
===========================================================================
=>> Recording filesystem state for preinst... done
=======================<phase: install >============================
===> Installing for py36-phono3py-1.13.3.27_2
===> Checking if py36-phono3py is already installed
===> Registering installation for py36-phono3py-1.13.3.27_2
[113i386-default-job-01] Installing py36-phono3py-1.13.3.27_2...
===========================================================================
=>> Checking shared library dependencies
0x00000001 NEEDED Shared library: [libc.so.7]
0x00000001 NEEDED Shared library: [libomp.so]
0x00000001 NEEDED Shared library: [libopenblas.so.0]
0x00000001 NEEDED Shared library: [libpython3.6m.so.1.0]
=======================<phase: deinstall >============================
===> Deinstalling for py36-phono3py
===> Deinstalling py36-phono3py-1.13.3.27_2
Updating database digests format: .......... done
Checking integrity... done (0 conflicting)
Deinstallation has been requested for the following 1 packages (of 0 packages in the universe):
Installed packages to be REMOVED:
py36-phono3py-1.13.3.27_2
Number of packages to be removed: 1
The operation will free 1 MiB.
[113i386-default-job-01] [1/1] Deinstalling py36-phono3py-1.13.3.27_2...
[113i386-default-job-01] [1/1] Deleting files for py36-phono3py-1.13.3.27_2: .......... done
===========================================================================
=>> Checking for extra files and directories
=>> Cleaning up wrkdir
===> Cleaning for py36-phono3py-1.13.3.27_2
build of science/py-phono3py | py36-phono3py-1.13.3.27_2 ended at Tue May 28 00:40:12 EAT 2019
build time: 00:00:18