=>> Building science/openmx build started at Mon May 27 17:18:27 EDT 2019 port directory: /usr/ports/science/openmx package name: openmx-3.8.5_4 building for: FreeBSD head-amd64-default-job-01 13.0-CURRENT FreeBSD 13.0-CURRENT 1300029 amd64 maintained by: yuri@FreeBSD.org Makefile ident: Poudriere version: 3.3.99.20190311 Host OSVERSION: 1300029 Jail OSVERSION: 1300029 Job Id: 01 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1300029 UNAME_v=FreeBSD 13.0-CURRENT 1300029 UNAME_r=13.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root WARNING_WAIT=0 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.3.99.20190311 MASTERMNT=/poudriere/data/.m/head-amd64-default/ref DEV_WARNING_WAIT=0 POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=tmux-256color GID=0 UID=0 PWD=/poudriere/data/.m/head-amd64-default/ref/.p/pool NO_WARNING_PKG_INSTALL_EOL=yes P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=head-amd64-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/poudriere/data/.m/head-amd64-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for openmx-3.8.5_4: SIMD=on: Use CPU-specific optimizations ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran8" FC="gfortran8" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc8" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc8" MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/science/openmx/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/openmx/work HOME=/wrkdirs/usr/ports/science/openmx/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/openmx/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" --End CONFIGURE_ENV-- --MAKE_ENV-- MPICH_CC=cc F77="gfortran8" FC="gfortran8" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc8" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc8" XDG_DATA_HOME=/wrkdirs/usr/ports/science/openmx/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/openmx/work HOME=/wrkdirs/usr/ports/science/openmx/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/openmx/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" /usr/local/lib/gcc8/libgcc_s.so /usr/local/lib/libmpifort.so -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -fstack-protector-strong -L/usr/local/lib " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/openmx" EXAMPLESDIR="share/examples/openmx" DATADIR="share/openmx" WWWDIR="www/openmx" ETCDIR="etc/openmx" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/openmx DOCSDIR=/usr/local/share/doc/openmx EXAMPLESDIR=/usr/local/share/examples/openmx WWWDIR=/usr/local/www/openmx ETCDIR=/usr/local/etc/openmx --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### DEV_WARNING_WAIT=0 #NO_IGNORE= # Minimize TeX dependency devel_doxygen_UNSET += DOCS LATEX # Bootstrapping isn't necessary for modern compilers and prevents taking # advantage of native-xtools. GCC < 6 aren't C++11-compatible while # Clang >= 6 and GCC >= 6 default to C++14. lang_gcc6_UNSET += BOOTSTRAP lang_gcc7_UNSET += BOOTSTRAP lang_gcc8_UNSET += BOOTSTRAP lang_gcc9_UNSET += BOOTSTRAP # Workaround GCC/qemu crashes .if ${MACHINE:Marm*} math_ceres-solver_UNSET += OPENMP graphics_colmap_UNSET += OPENMP .endif #### /usr/local/etc/poudriere.d/head-amd64-make.conf #### OPTIONS_SET += OPENAL FREEALUT #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 8.0.0 (tags/RELEASE_800/final 356365) (based on LLVM 8.0.0) Target: x86_64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 8.0.0 (tags/RELEASE_800/final 356365) (based on LLVM 8.0.0) Target: x86_64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 8.0.0 (tags/RELEASE_800/final 356365) (based on LLVM 8.0.0) Target: x86_64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=amd64 OPSYS=FreeBSD _OSRELEASE=13.0-CURRENT OSREL=13.0 OSVERSION=1300029 PYTHONBASE=/usr/local HAVE_COMPAT_IA32_KERN=YES _SMP_CPUS=8 CONFIGURE_MAX_CMD_LEN=262144 HAVE_PORTS_ENV=1 #### Misc Poudriere #### ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 63536 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===> License GPLv2 accepted by the user =========================================================================== =================================================== ===> openmx-3.8.5_4 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_5.txz [head-amd64-default-job-01] Installing pkg-1.10.5_5... [head-amd64-default-job-01] Extracting pkg-1.10.5_5: .......... done ===> openmx-3.8.5_4 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of openmx-3.8.5_4 =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv2 accepted by the user ===> openmx-3.8.5_4 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by openmx-3.8.5_4 for building =========================================================================== =================================================== ===> License GPLv2 accepted by the user ===> openmx-3.8.5_4 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by openmx-3.8.5_4 for building => SHA256 Checksum OK for openmx/openmx3.8.tar.gz. => SHA256 Checksum OK for openmx/patch3.8.5.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv2 accepted by the user ===> openmx-3.8.5_4 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by openmx-3.8.5_4 for building ===> Extracting for openmx-3.8.5_4 => SHA256 Checksum OK for openmx/openmx3.8.tar.gz. => SHA256 Checksum OK for openmx/patch3.8.5.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for openmx-3.8.5_4 ===> Converting DOS text files to UNIX text files ===> Applying FreeBSD patches for openmx-3.8.5_4 ===> Ignoring patchfile patch-makefile.orig =========================================================================== =================================================== ===> openmx-3.8.5_4 depends on executable: gfortran8 - not found ===> Installing existing package /packages/All/gcc8-8.3.0_2.txz [head-amd64-default-job-01] Installing gcc8-8.3.0_2... [head-amd64-default-job-01] `-- Installing binutils-2.32_1,1... [head-amd64-default-job-01] | `-- Installing gettext-runtime-0.19.8.1_2... [head-amd64-default-job-01] | | `-- Installing indexinfo-0.3.1... [head-amd64-default-job-01] | | `-- Extracting indexinfo-0.3.1: .... done [head-amd64-default-job-01] | `-- Extracting gettext-runtime-0.19.8.1_2: .......... done [head-amd64-default-job-01] `-- Extracting binutils-2.32_1,1: .......... done [head-amd64-default-job-01] `-- Installing gmp-6.1.2_1... [head-amd64-default-job-01] `-- Extracting gmp-6.1.2_1: .......... done [head-amd64-default-job-01] `-- Installing mpc-1.1.0_2... [head-amd64-default-job-01] | `-- Installing mpfr-4.0.2... [head-amd64-default-job-01] | `-- Extracting mpfr-4.0.2: .......... done [head-amd64-default-job-01] `-- Extracting mpc-1.1.0_2: ......... done [head-amd64-default-job-01] Extracting gcc8-8.3.0_2: .......... done Message from gcc8-8.3.0_2: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> openmx-3.8.5_4 depends on executable: gfortran8 - found ===> Returning to build of openmx-3.8.5_4 ===> openmx-3.8.5_4 depends on executable: gmake - not found ===> Installing existing package /packages/All/gmake-4.2.1_3.txz [head-amd64-default-job-01] Installing gmake-4.2.1_3... [head-amd64-default-job-01] Extracting gmake-4.2.1_3: .......... done ===> openmx-3.8.5_4 depends on executable: gmake - found ===> Returning to build of openmx-3.8.5_4 ===> openmx-3.8.5_4 depends on file: /usr/local/bin/as - found =========================================================================== =================================================== ===> openmx-3.8.5_4 depends on shared library: libblas.so - not found ===> Installing existing package /packages/All/blas-3.5.0_5.txz [head-amd64-default-job-01] Installing blas-3.5.0_5... [head-amd64-default-job-01] Extracting blas-3.5.0_5: ....... done ===> openmx-3.8.5_4 depends on shared library: libblas.so - found (/usr/local/lib/libblas.so) ===> Returning to build of openmx-3.8.5_4 ===> openmx-3.8.5_4 depends on shared library: libfftw3.so - not found ===> Installing existing package /packages/All/fftw3-3.3.8_3.txz [head-amd64-default-job-01] Installing fftw3-3.3.8_3... [head-amd64-default-job-01] Extracting fftw3-3.3.8_3: .......... done ===> openmx-3.8.5_4 depends on shared library: libfftw3.so - found (/usr/local/lib/libfftw3.so) ===> Returning to build of openmx-3.8.5_4 ===> openmx-3.8.5_4 depends on shared library: liblapack.so - not found ===> Installing existing package /packages/All/lapack-3.5.0_7.txz [head-amd64-default-job-01] Installing lapack-3.5.0_7... [head-amd64-default-job-01] Extracting lapack-3.5.0_7: .......... done ===> openmx-3.8.5_4 depends on shared library: liblapack.so - found (/usr/local/lib/liblapack.so) ===> Returning to build of openmx-3.8.5_4 ===> openmx-3.8.5_4 depends on shared library: libmpich.so - not found ===> Installing existing package /packages/All/mpich-3.2.1_4.txz [head-amd64-default-job-01] Installing mpich-3.2.1_4... [head-amd64-default-job-01] `-- Installing hwloc-1.11.11... [head-amd64-default-job-01] | `-- Installing libpciaccess-0.13.5... [head-amd64-default-job-01] | | `-- Installing pciids-20190418... [head-amd64-default-job-01] | | `-- Extracting pciids-20190418: ..... done [head-amd64-default-job-01] | `-- Extracting libpciaccess-0.13.5: ......... done [head-amd64-default-job-01] | `-- Installing libxml2-2.9.8... [head-amd64-default-job-01] | `-- Extracting libxml2-2.9.8: .......... done [head-amd64-default-job-01] `-- Extracting hwloc-1.11.11: .......... done [head-amd64-default-job-01] Extracting mpich-3.2.1_4: .......... done Message from mpich-3.2.1_4: ===> NOTICE: The mpich port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> openmx-3.8.5_4 depends on shared library: libmpich.so - found (/usr/local/lib/libmpich.so) ===> Returning to build of openmx-3.8.5_4 =========================================================================== =>> Recording filesystem state for prebuild... done =================================================== ===> openmx-3.8.5_4 depends on executable: gfortran8 - found ===> openmx-3.8.5_4 depends on executable: gmake - found ===> openmx-3.8.5_4 depends on file: /usr/local/bin/as - found ===> openmx-3.8.5_4 depends on shared library: libblas.so - found (/usr/local/lib/libblas.so) ===> openmx-3.8.5_4 depends on shared library: libfftw3.so - found (/usr/local/lib/libfftw3.so) ===> openmx-3.8.5_4 depends on shared library: liblapack.so - found (/usr/local/lib/liblapack.so) ===> openmx-3.8.5_4 depends on shared library: libmpich.so - found (/usr/local/lib/libmpich.so) ===> Configuring for openmx-3.8.5_4 =========================================================================== =================================================== ===> Building for openmx-3.8.5_4 gmake[1]: Entering directory '/wrkdirs/usr/ports/science/openmx/work/openmx3.8/source' mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c openmx.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c openmx_common.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c Input_std.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c Inputtools.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c init.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c LU_inverse.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c ReLU_inverse.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c truncation.c Input_std.c:206:9: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (fp=input_find(":25:1: note: expanded from here dgemm_ ^ EC.c:1162:7: warning: implicit declaration of function 'dgemm_' is invalid in C99 [-Wimplicit-function-declaration] F77_NAME(dgemm,DGEMM)("N", "N", &M, &N, &K, &alpha, ^ ./f77func.h:63:27: note: expanded from macro 'F77_NAME' #define F77_NAME(a,A) a ## _ ^ :39:1: note: expanded from here dgemm_ ^ EC.c:2064:2: warning: implicit declaration of function 'dgemm_' is invalid in C99 [-Wimplicit-function-declaration] F77_NAME(dgemm,DGEMM)("N", "N", &M, &N, &K, &alpha, ^ ./f77func.h:63:27: note: expanded from macro 'F77_NAME' #define F77_NAME(a,A) a ## _ ^ :42:1: note: expanded from here dgemm_ ^ EC.c:2353:7: warning: implicit declaration of function 'dgemm_' is invalid in C99 [-Wimplicit-function-declaration] F77_NAME(dgemm,DGEMM)("N", "N", &M, &N, &K, &alpha, ^ ./f77func.h:63:27: note: expanded from macro 'F77_NAME' #define F77_NAME(a,A) a ## _ ^ :50:1: note: expanded from here dgemm_ ^ EC.c:3422:7: warning: implicit declaration of function 'dgemm_' is invalid in C99 [-Wimplicit-function-declaration] F77_NAME(dgemm,DGEMM)("N", "T", &M, &N, &K, &alpha, ^ ./f77func.h:63:27: note: expanded from macro 'F77_NAME' #define F77_NAME(a,A) a ## _ ^ :53:1: note: expanded from here dgemm_ ^ EC.c:3596:7: warning: implicit declaration of function 'dgemm_' is invalid in C99 [-Wimplicit-function-declaration] F77_NAME(dgemm,DGEMM)("N", "N", &M, &N, &K, &alpha, ^ ./f77func.h:63:27: note: expanded from macro 'F77_NAME' #define F77_NAME(a,A) a ## _ ^ :59:1: note: expanded from here dgemm_ ^ mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c Eigen_lapack2.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c Eigen_lapack3.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c EigenBand_lapack.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c Eigen_PReHH.c 6 warnings generated. mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c BroadCast_ReMatrix.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c Eigen_PHH.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c BroadCast_ComplexMatrix.c Eigen_PReHH.c:181:3: warning: implicit declaration of function 'solve_evp_real_' is invalid in C99 [-Wimplicit-function-declaration] F77_NAME(solve_evp_real,SOLVE_EVP_REAL)(&na, &nev, a, &na_rows, &ko[1], z, &na_rows, &nblk, &mpi_comm_rows_int, &mpi_comm_cols_int); ^ ./f77func.h:63:27: note: expanded from macro 'F77_NAME' #define F77_NAME(a,A) a ## _ ^ :25:1: note: expanded from here solve_evp_real_ ^ Eigen_PHH.c:163:3: warning: implicit declaration of function 'solve_evp_complex_' is invalid in C99 [-Wimplicit-function-declaration] F77_NAME(solve_evp_complex,SOLVE_EVP_COMPLEX)(&na, &nev, a, &na_rows, &ko[1], z, &na_rows, &nblk, &mpi_comm_rows_int, &mpi_comm_cols_int); ^ ./f77func.h:63:27: note: expanded from macro 'F77_NAME' #define F77_NAME(a,A) a ## _ ^ :25:1: note: expanded from here solve_evp_complex_ ^ mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c lapack_dstedc1.c 1 warning generated. mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c lapack_dstedc2.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c lapack_dstedc3.c 1 warning generated. mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c lapack_dstegr1.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c lapack_dstegr2.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c lapack_dstegr3.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c lapack_dstevx1.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c lapack_dstevx2.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c lapack_dstevx3.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c lapack_dstevx4.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c lapack_dstevx5.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c lapack_dsteqr1.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c Nonlocal_Basis.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c Set_OLP_Kin.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c Set_Nonlocal.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c Set_ProExpn_VNA.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c Set_Hamiltonian.c 6 warnings generated. mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c Set_Vpot.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c Voronoi_Charge.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c Voronoi_Orbital_Moment.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c Fuzzy_Weight.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c dampingF.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c deri_dampingF.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c Spherical_Bessel.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c iterout.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c iterout_md.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c Allocate_Arrays.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c Free_Arrays.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c Init_List_YOUSO.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c outputfile1.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c malloc_multidimarray.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c PrintMemory.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c PrintMemory_Fix.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c dtime.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c OutData.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c OutData_Binary.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c init_alloc_first.c OutData_Binary.c:1860:3: warning: implicit declaration of function 'fsync' is invalid in C99 [-Wimplicit-function-declaration] fsync(fd); ^ 2 warnings generated. mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c File_CntCoes.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c SCF2File.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c mimic_sse.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c Make_Comm_Worlds.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c Set_Allocate_Atom2CPU.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c Cutoff.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c Generating_MP_Special_Kpt.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c Maketest.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c Runtest.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c Memory_Leak_test.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c Force_test.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c Stress_test.c Runtest.c:272:14: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (fp3=input_find(" or explicitly provide a declaration for 'memset' DFTD3vdW_init.c:33502:35: warning: 'memset' call operates on objects of type 'int' while the size is based on a different type 'int *' [-Wsizeof-pointer-memaccess] memset( maxcn_dftD, -1, sizeof( maxcn_dftD) ); ~~~~~~~~~~ ^~~~~~~~~~ DFTD3vdW_init.c:33502:35: note: did you mean to dereference the argument to 'sizeof' (and multiply it by the number of elements)? memset( maxcn_dftD, -1, sizeof( maxcn_dftD) ); ^~~~~~~~~~ DFTD3vdW_init.c:33503:36: warning: 'memset' call operates on objects of type 'double' while the size is based on a different type 'double *' [-Wsizeof-pointer-memaccess] memset( rcov_dftD, -1.0, sizeof( rcov_dftD) ); ~~~~~~~~~ ^~~~~~~~~ DFTD3vdW_init.c:33503:36: note: did you mean to dereference the argument to 'sizeof' (and multiply it by the number of elements)? memset( rcov_dftD, -1.0, sizeof( rcov_dftD) ); ^~~~~~~~~ DFTD3vdW_init.c:33504:36: warning: 'memset' call operates on objects of type 'double' while the size is based on a different type 'double *' [-Wsizeof-pointer-memaccess] memset( r2r4_dftD, -1.0, sizeof( r2r4_dftD) ); ~~~~~~~~~ ^~~~~~~~~ DFTD3vdW_init.c:33504:36: note: did you mean to dereference the argument to 'sizeof' (and multiply it by the number of elements)? memset( r2r4_dftD, -1.0, sizeof( r2r4_dftD) ); ^~~~~~~~~ mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c TRAN_Calc_OneTransmission.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c TRAN_Main_Analysis.c TRAN_Main_Analysis.c:1062:70: warning: equality comparison result unused [-Wunused-comparison] if (TRAN_Channel_Nenergy * TRAN_Channel_Nkpoint <= 0) TRAN_Channel == 0; ~~~~~~~~~~~~~^~~~ TRAN_Main_Analysis.c:1062:70: note: use '=' to turn this equality comparison into an assignment if (TRAN_Channel_Nenergy * TRAN_Channel_Nkpoint <= 0) TRAN_Channel == 0; ^~ = TRAN_Main_Analysis.c:3315:12: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (fp = input_find(" or explicitly provide a declaration for 'strcmp' TRAN_Channel_Output.c:400:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] TRAN_Output_ChannelCube( ^ TRAN_Channel_Output.c:516:9: warning: implicit declaration of function 'fsync' is invalid in C99 [-Wimplicit-function-declaration] fsync(fd); ^ TRAN_Channel_Output.c:547:9: warning: implicit declaration of function 'fsync' is invalid in C99 [-Wimplicit-function-declaration] fsync(fd); ^ TRAN_Channel_Output.c:566:1: warning: control reaches end of non-void function [-Wreturn-type] } /* TRAN_Output_ChannelCube */ ^ mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c TRAN_Calc_CurrentDensity.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c TRAN_CDen_Main.c TRAN_CDen_Main.c:817:11: warning: implicit declaration of function 'fsync' is invalid in C99 [-Wimplicit-function-declaration] fsync(fd); ^ 5 warnings generated. mpif90 -O -Wl,-rpath=/usr/local/lib/gcc8 -fopenmp -c elpa1.f90 mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c NBO_Cluster.c 9 warnings generated. mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c NBO_Krylov.c NBO_Krylov.c:471:13: warning: implicit declaration of function 'omp_get_thread_num' is invalid in C99 [-Wimplicit-function-declaration] OMPID = omp_get_thread_num(); ^ NBO_Krylov.c:472:14: warning: implicit declaration of function 'omp_get_num_threads' is invalid in C99 [-Wimplicit-function-declaration] Nthrds = omp_get_num_threads(); ^ NBO_Krylov.c:473:14: warning: implicit declaration of function 'omp_get_num_procs' is invalid in C99 [-Wimplicit-function-declaration] Nprocs = omp_get_num_procs(); ^ 1 warning generated. mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -c -o exx.o exx.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -c -o exx_index.o exx_index.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -c -o exx_vector.o exx_vector.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -c -o exx_log.o exx_log.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -c -o exx_step1.o exx_step1.c 3 warnings generated. mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -c -o exx_step2.o exx_step2.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -c -o exx_file_overlap.o exx_file_overlap.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -c -o exx_file_eri.o exx_file_eri.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -c -o exx_interface_openmx.o exx_interface_openmx.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -c -o exx_debug.o exx_debug.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -c -o exx_xc.o exx_xc.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -c -o exx_rhox.o exx_rhox.c 3 warnings generated. mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -c -o liberi-091216/source/eri.o liberi-091216/source/eri.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -c -o liberi-091216/source/eri_ll.o liberi-091216/source/eri_ll.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -c -o liberi-091216/source/eri_sf.o liberi-091216/source/eri_sf.c liberi-091216/source/eri.c:133:43: warning: passing 'double *[3]' to parameter of type 'const double **' discards qualifiers in nested pointer types [-Wincompatible-pointer-types-discards-qualifiers] ERI_LL_Overlap_d(solver, p, dp, alp1, dalp1, alp2, dalp2, cx); ^~~~~ ./liberi-091216/source/eri.h:532:17: note: passing argument to parameter 'da1' here const double *da1[3], ^ liberi-091216/source/eri.c:133:56: warning: passing 'double *[3]' to parameter of type 'const double **' discards qualifiers in nested pointer types [-Wincompatible-pointer-types-discards-qualifiers] ERI_LL_Overlap_d(solver, p, dp, alp1, dalp1, alp2, dalp2, cx); ^~~~~ ./liberi-091216/source/eri.h:534:17: note: passing argument to parameter 'da2' here const double *da2[3], ^ liberi-091216/source/eri.c:228:35: warning: incompatible pointer types passing 'double *' to parameter of type 'double (*)[3][2]' [-Wincompatible-pointer-types] ERI_Integral_GL_d(solver, I4, dI4, glF, glG, dglF, dglG, ^~~ ./liberi-091216/source/eri.h:574:17: note: passing argument to parameter 'dI4' here double dI4[4][3][2], ^ liberi-091216/source/eri.c:228:50: warning: passing 'double *[3]' to parameter of type 'const double **' discards qualifiers in nested pointer types [-Wincompatible-pointer-types-discards-qualifiers] ERI_Integral_GL_d(solver, I4, dI4, glF, glG, dglF, dglG, ^~~~ ./liberi-091216/source/eri.h:577:17: note: passing argument to parameter 'dF1' here const double *dF1[3], /* (IN) Overlap matrix */ ^ liberi-091216/source/eri.c:228:56: warning: passing 'double *[3]' to parameter of type 'const double **' discards qualifiers in nested pointer types [-Wincompatible-pointer-types-discards-qualifiers] ERI_Integral_GL_d(solver, I4, dI4, glF, glG, dglF, dglG, ^~~~ ./liberi-091216/source/eri.h:578:17: note: passing argument to parameter 'dF2' here const double *dF2[3], /* (IN) */ ^ 5 warnings generated. mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -c -o liberi-091216/source/eri_interpolate.o liberi-091216/source/eri_interpolate.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -c -o liberi-091216/source/eri_gtbl.o liberi-091216/source/eri_gtbl.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -c -o liberi-091216/source/sbt/eri_sbt.o liberi-091216/source/sbt/eri_sbt.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -c -o liberi-091216/source/sbt/log/eri_fsbt.o liberi-091216/source/sbt/log/eri_fsbt.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -c -o liberi-091216/source/sbt/log/eri_logfsbt.o liberi-091216/source/sbt/log/eri_logfsbt.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -c -o liberi-091216/source/sbt/linear/eri_linfsbt.o liberi-091216/source/sbt/linear/eri_linfsbt.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -o DosMain.o -c DosMain.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -o Tetrahedron_Blochl.o -c Tetrahedron_Blochl.c DosMain.c:2699:11: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (fp=input_find("> Checking for filesystem violations... done =================================================== ===> openmx-3.8.5_4 depends on executable: gfortran8 - found =========================================================================== =>> Recording filesystem state for prestage... done =================================================== ===> Staging for openmx-3.8.5_4 ===> openmx-3.8.5_4 depends on executable: gfortran8 - found ===> Generating temporary packing list gmake[1]: Entering directory '/wrkdirs/usr/ports/science/openmx/work/openmx3.8/source' strip openmx install openmx /wrkdirs/usr/ports/science/openmx/work/stage/usr/local/bin/openmx gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/openmx/work/openmx3.8/source' install -s -m 555 /wrkdirs/usr/ports/science/openmx/work/openmx3.8/source/DosMain /wrkdirs/usr/ports/science/openmx/work/stage/usr/local/bin install -s -m 555 /wrkdirs/usr/ports/science/openmx/work/openmx3.8/source/jx /wrkdirs/usr/ports/science/openmx/work/stage/usr/local/bin install -s -m 555 /wrkdirs/usr/ports/science/openmx/work/openmx3.8/source/analysis_example /wrkdirs/usr/ports/science/openmx/work/stage/usr/local/bin install -s -m 555 /wrkdirs/usr/ports/science/openmx/work/openmx3.8/source/esp /wrkdirs/usr/ports/science/openmx/work/stage/usr/local/bin install -s -m 555 /wrkdirs/usr/ports/science/openmx/work/openmx3.8/source/polB /wrkdirs/usr/ports/science/openmx/work/stage/usr/local/bin install -s -m 555 /wrkdirs/usr/ports/science/openmx/work/openmx3.8/source/bandgnu13 /wrkdirs/usr/ports/science/openmx/work/stage/usr/local/bin install -s -m 555 /wrkdirs/usr/ports/science/openmx/work/openmx3.8/source/bin2txt /wrkdirs/usr/ports/science/openmx/work/stage/usr/local/bin install -s -m 555 /wrkdirs/usr/ports/science/openmx/work/openmx3.8/source/cube2xsf /wrkdirs/usr/ports/science/openmx/work/stage/usr/local/bin install -s -m 555 /wrkdirs/usr/ports/science/openmx/work/openmx3.8/source/intensity_map /wrkdirs/usr/ports/science/openmx/work/stage/usr/local/bin install -s -m 555 /wrkdirs/usr/ports/science/openmx/work/openmx3.8/source/md2axsf /wrkdirs/usr/ports/science/openmx/work/stage/usr/local/bin cd /wrkdirs/usr/ports/science/openmx/work/openmx3.8/source/.. && /bin/sh -c '(/usr/bin/find -Ed $1 $3 | /usr/bin/cpio -dumpl $2 >/dev/null 2>&1) && /usr/bin/find -Ed $1 $3 \( -type d -exec /bin/sh -c '\''cd '\''$2'\'' && chmod 755 "$@"'\'' . {} + -o -type f -exec /bin/sh -c '\''cd '\''$2'\'' && chmod 0644 "$@"'\'' . {} + \)' COPYTREE_SHARE DFT_DATA13 /wrkdirs/usr/ports/science/openmx/work/stage/usr/local/share/openmx ====> Compressing man pages (compress-man) =========================================================================== ====> Running Q/A tests (stage-qa) ====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) =>> Checking for staging violations... done =================================================== ===> Building package for openmx-3.8.5_4 =========================================================================== =>> Recording filesystem state for preinst... done =================================================== ===> Installing for openmx-3.8.5_4 ===> Checking if openmx is already installed ===> Registering installation for openmx-3.8.5_4 [head-amd64-default-job-01] Installing openmx-3.8.5_4... =========================================================================== =>> Checking shared library dependencies 0x0000000000000001 NEEDED Shared library: [libblas.so.2] 0x0000000000000001 NEEDED Shared library: [libc.so.7] 0x0000000000000001 NEEDED Shared library: [libfftw3.so.3] 0x0000000000000001 NEEDED Shared library: [libgcc_s.so.1] 0x0000000000000001 NEEDED Shared library: [libgfortran.so.5] 0x0000000000000001 NEEDED Shared library: [liblapack.so.4] 0x0000000000000001 NEEDED Shared library: [libm.so.5] 0x0000000000000001 NEEDED Shared library: [libmpi.so.12] 0x0000000000000001 NEEDED Shared library: [libmpifort.so.12] 0x0000000000000001 NEEDED Shared library: [libomp.so] 0x0000000000000001 NEEDED Shared library: [libthr.so.3] =================================================== ===> Deinstalling for openmx ===> Deinstalling openmx-3.8.5_4 Updating database digests format: .......... done Checking integrity... done (0 conflicting) Deinstallation has been requested for the following 1 packages (of 0 packages in the universe): Installed packages to be REMOVED: openmx-3.8.5_4 Number of packages to be removed: 1 The operation will free 304 MiB. [head-amd64-default-job-01] [1/1] Deinstalling openmx-3.8.5_4... [head-amd64-default-job-01] [1/1] Deleting files for openmx-3.8.5_4: .......... done =========================================================================== =>> Checking for extra files and directories =>> Cleaning up wrkdir ===> Cleaning for openmx-3.8.5_4 build of science/openmx | openmx-3.8.5_4 ended at Mon May 27 17:22:18 EDT 2019 build time: 00:03:51