diff --git a/biology/py-macs3/Makefile b/biology/py-macs3/Makefile index ad1756edbd32..6387fafd3346 100644 --- a/biology/py-macs3/Makefile +++ b/biology/py-macs3/Makefile @@ -1,48 +1,48 @@ PORTNAME= MACS3 DISTVERSIONPREFIX= v DISTVERSION= 3.0.3 CATEGORIES= biology python PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= jwb@FreeBSD.org COMMENT= Peak caller aimed at transcription factor binding sites WWW= https://github.com/taoliu/MACS LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE NOT_FOR_ARCHS= i386 NOT_FOR_ARCHS_REASON_i386=Requires _Float16 COMMON_DEPENDS= ${PYNUMPY} \ ${PYTHON_PKGNAMEPREFIX}scipy>1.11.1:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}cykhash>=2.0,<3.0:devel/py-cykhash@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-learn>=1.3:science/py-scikit-learn@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}hmmlearn>=0.3.2:math/py-hmmlearn@${PY_FLAVOR} BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} \ simde>0:devel/simde \ ${PYTHON_PKGNAMEPREFIX}cython3>0:lang/cython3 \ ${COMMON_DEPENDS} RUN_DEPENDS= ${COMMON_DEPENDS} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pytest>0:devel/py-pytest@${PY_FLAVOR} \ bash:shells/bash USES= localbase perl5 python shebangfix USE_GITHUB= yes USE_PERL5= test -USE_PYTHON= autoplist concurrent pep517 +USE_PYTHON= autoplist concurrent distutils GH_ACCOUNT= macs3-project GH_PROJECT= MACS SHEBANG_FILES= test/cmdlinetest* test/prockreport test/*.py test/pyprofile* post-stage: ${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/MACS3/*/*.so # FIXME: Some tests fail due to a py-threadpoolctl issue # https://github.com/joblib/threadpoolctl/pull/148 do-test: deinstall reinstall @${RM} -rf ${WRKSRC}/temp @cd ${WRKSRC}/test && ./cmdlinetest tag .include