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biology/abyss/Makefile
# $FreeBSD$ | # $FreeBSD$ | ||||
PORTNAME= abyss | PORTNAME= abyss | ||||
DISTVERSION= 2.1.5 | DISTVERSION= 2.1.5 | ||||
PORTREVISION= 6 | PORTREVISION= 7 | ||||
CATEGORIES= biology | CATEGORIES= biology | ||||
MASTER_SITES= http://www.bcgsc.ca/platform/bioinfo/software/${PORTNAME}/releases/${DISTVERSION}/ | MASTER_SITES= http://www.bcgsc.ca/platform/bioinfo/software/${PORTNAME}/releases/${DISTVERSION}/ | ||||
PATCH_SITES= https://github.com/bcgsc/${PORTNAME}/commit/ | PATCH_SITES= https://github.com/bcgsc/${PORTNAME}/commit/ | ||||
PATCHFILES= 25eb9d2a914fb211fdfe04fcda5593f29fd23ff5.patch:-p1 | PATCHFILES= 25eb9d2a914fb211fdfe04fcda5593f29fd23ff5.patch:-p1 | ||||
MAINTAINER= yuri@FreeBSD.org | MAINTAINER= yuri@FreeBSD.org | ||||
COMMENT= Assembly By Short Sequences: parallel, paired-end sequence assembler | COMMENT= Assembly By Short Sequences: parallel, paired-end sequence assembler | ||||
LICENSE= GPLv3 | LICENSE= GPLv3 | ||||
LICENSE_FILE= ${WRKSRC}/LICENSE | LICENSE_FILE= ${WRKSRC}/LICENSE | ||||
BUILD_DEPENDS= ${LOCALBASE}/include/boost/version.hpp:devel/boost-libs \ | BUILD_DEPENDS= ${LOCALBASE}/include/boost/version.hpp:devel/boost-libs \ | ||||
ghc:lang/ghc \ | ghc:lang/ghc \ | ||||
pandoc:textproc/hs-pandoc # pandoc is required just for one man page: abyss-sealer | pandoc:textproc/hs-pandoc # pandoc is required just for one man page: abyss-sealer | ||||
LIB_DEPENDS= libffi.so:devel/libffi \ | LIB_DEPENDS= libffi.so:devel/libffi \ | ||||
libgmp.so:math/gmp \ | libgmp.so:math/gmp | ||||
libomp.so:devel/openmp | |||||
RUN_DEPENDS= bash:shells/bash \ | RUN_DEPENDS= bash:shells/bash \ | ||||
gmake:devel/gmake | gmake:devel/gmake | ||||
USES= compiler:c++11-lang gmake iconv:wchar_t localbase:ldflags shebangfix sqlite | USES= compiler:c++11-lang gmake iconv:wchar_t localbase:ldflags shebangfix sqlite | ||||
SHEBANG_FILES= bin/${PORTNAME}-* | SHEBANG_FILES= bin/${PORTNAME}-* | ||||
SHEBANG_LANG= make | SHEBANG_LANG= make | ||||
make_OLD_CMD= /usr/bin/make | make_OLD_CMD= /usr/bin/make | ||||
make_CMD= ${PREFIX}/bin/gmake | make_CMD= ${PREFIX}/bin/gmake | ||||
GNU_CONFIGURE= yes | GNU_CONFIGURE= yes | ||||
CONFIGURE_ARGS= --without-sparsehash # configure fails to find std::hash, reported to the ML: https://groups.google.com/forum/#!topic/trans-abyss/SZDBKR5bKxs | CONFIGURE_ARGS= --without-sparsehash # configure fails to find std::hash, reported to the ML: https://groups.google.com/forum/#!topic/trans-abyss/SZDBKR5bKxs | ||||
OPTIONS_DEFINE= DOCS | OPTIONS_DEFINE= DOCS | ||||
PORTDOCS= * | PORTDOCS= * | ||||
.include <bsd.port.mk> | .include <bsd.port.mk> |