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biology/unanimity/Makefile
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# Sensitive to dependency versions, use latest commit for everything | # Sensitive to dependency versions, use latest commit for everything | ||||
BUILD_DEPENDS= pbseqan>=g20171002:biology/pbseqan \ | BUILD_DEPENDS= pbseqan>=g20171002:biology/pbseqan \ | ||||
pbbam>=g20180416:biology/pbbam \ | pbbam>=g20180416:biology/pbbam \ | ||||
pbcopper>=g20180413:biology/pbcopper | pbcopper>=g20180413:biology/pbcopper | ||||
LIB_DEPENDS= libhts.so:biology/htslib \ | LIB_DEPENDS= libhts.so:biology/htslib \ | ||||
libboost_regex.so:devel/boost-libs | libboost_regex.so:devel/boost-libs | ||||
USES= cmake compiler:c++14-lang pkgconfig python | USES= cmake:insource compiler:c++14-lang pkgconfig python | ||||
USE_GITHUB= yes | USE_GITHUB= yes | ||||
GH_ACCOUNT= PacificBiosciences | GH_ACCOUNT= PacificBiosciences | ||||
CMAKE_ARGS+= -DHTSLIB_INCLUDE_DIRS:STRING=${LOCALBASE}/include/htslib \ | CMAKE_ARGS+= -DHTSLIB_INCLUDE_DIRS:STRING=${LOCALBASE}/include/htslib \ | ||||
-DHTSLIB_LIBRARIES:STRING="-L${LOCALBASE}/lib -lhts" \ | -DHTSLIB_LIBRARIES:STRING="-L${LOCALBASE}/lib -lhts" \ | ||||
-DPacBioBAM_INCLUDE_DIRS:STRING=${LOCALBASE}/include/pbbam \ | -DPacBioBAM_INCLUDE_DIRS:STRING=${LOCALBASE}/include/pbbam \ | ||||
-DPacBioBAM_LIBRARIES:STRING="-L${LOCALBASE}/lib -lpbbam" \ | -DPacBioBAM_LIBRARIES:STRING="-L${LOCALBASE}/lib -lpbbam" \ | ||||
-DSEQAN_INCLUDE_DIRS:STRING=${LOCALBASE}/include/PacBio \ | -DSEQAN_INCLUDE_DIRS:STRING=${LOCALBASE}/include/PacBio \ | ||||
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